Resource Type:
Polypeptide
Name:
XM_017364541.1
Identifier:
XM_017364541.1-protein
Sequence:
MESYCIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVK
EVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLP
RIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVW
EDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLK
RCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGK
LLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVE
AEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRV
AKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP
NYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLF
GLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFI
IAPHHLRMSLVRHLLSDPTGATMVKTYLTA
Sequence Length:
530
Sequence Checksum:
c7990ba19e901d436d17edc75cbfbe23
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364541.1, derives from mRNA, XM_017364541.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEX5 ((Putative lycopene epsilon cyclase {ECO:0000313|EMBL:ABB52073.1}))
HSP 1 Score: 1098.96 bits (2841), Expect = 0.000e+0
Identity = 527/530 (99.43%), Postives = 529/530 (99.81%), Query Frame = 0
Match: Q2VEX5 ((Putative lycopene epsilon cyclase {ECO:0000313|EMBL:ABB52073.1}))
HSP 1 Score: 1098.96 bits (2841), Expect = 0.000e+0
Identity = 527/530 (99.43%), Postives = 529/530 (99.81%), Query Frame = 0
Query: 1 MESYCIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLTA 530
MESYCIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEV SCVAVVEDEEFAD+EDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPG+EAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLTA
Sbjct: 1 MESYCIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVISCVAVVEDEEFADEEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGMEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLTA 530
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZWV0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523275.1}))
HSP 1 Score: 882.478 bits (2279), Expect = 0.000e+0
Identity = 429/530 (80.94%), Postives = 468/530 (88.30%), Query Frame = 0
Match: A0A5J4ZWV0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523275.1}))
HSP 1 Score: 882.478 bits (2279), Expect = 0.000e+0
Identity = 429/530 (80.94%), Postives = 468/530 (88.30%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLR----RSNVKVSCGRKS-EMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLT 529
CIG RNF TM V STCPTW RRKRLR RS + S S ++R SCVAV ED FAD+ED++KAGGSELLFVQMQ+ K+MD QSKL KLP+I I D++LDLVVIGCGPAGLALAAESA+LGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVW DTIVYLD+GDPI+IGRAYGRVSRHLLHEELL RCVESGVSYLSSKVE+I+EA +G +L+ECE+NIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY K+ V +EA+YPTFLY MPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRL+TMG+R+ KTYEEEWSYIPVGGSLPNT QKNLAFGAAASMVHPATGYSVVRSLSEAP YA+VIANILK M+ + TENISMQAW TLWPQERKRQRAFFLFGLALILQLDI+GIRTFF+TFFRLP WMWQGFLGS+LSS DLVLFAFYMF++AP ++RMSL+RHLLSDPTGATM++TYLT
Sbjct: 3 CIGARNFATMVV-STCPTWT-SRRKRLRNKQSRSMHRYSSHISSLQVRSSAGSESCVAVKED--FADEEDYIKAGGSELLFVQMQQKKSMDKQSKLTEKLPQIAIGDTLLDLVVIGCGPAGLALAAESARLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWGDTIVYLDNGDPILIGRAYGRVSRHLLHEELLNRCVESGVSYLSSKVERIVEATNGLNLIECEHNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYIKRTVQCLEAQYPTFLYAMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLETMGVRIIKTYEEEWSYIPVGGSLPNTAQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIANILKRGHSKDMLTHITSTENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPNWMWQGFLGSTLSSADLVLFAFYMFVVAPSNMRMSLIRHLLSDPTGATMIRTYLT 528
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YMW7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA33137.1}) (Fragment))
HSP 1 Score: 877.085 bits (2265), Expect = 0.000e+0
Identity = 429/531 (80.79%), Postives = 462/531 (87.01%), Query Frame = 0
Match: A0A5B6YMW7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA33137.1}) (Fragment))
HSP 1 Score: 877.085 bits (2265), Expect = 0.000e+0
Identity = 429/531 (80.79%), Postives = 462/531 (87.01%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKS------EMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLT 529
CIG RNF +AV STCPTWR RRKRLR V+ S R S ++R SCVA E E+FAD+ED++KAGGSELLFVQMQ++K MD QSKLA KLP+I I D++LDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVWRDTIVYLDD DPI+IGRAYGRVSRHLLHEELL RCVES VSYLSSKVE+IIEA +G SL+ECE+NIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRD KQKV + A YPTFLY MPMSPTR+FFEETCLAS DAMPFDLLKKKLMSRL+TMG+RV KTYEEEWSYIPVGGSLPNT QKNLAFGAAASMVHPATGYSVVRSLSEAP YA+VIANILK M+ ENISMQAW LWPQERKRQRAFFLFGLALIL+LDI+GIRTFF TFFRLP WMWQGFLGS+LSS DLVLFAFYMF+IAP+++RM LVRHLLSDPTGATM++TYLT
Sbjct: 58 CIGARNFAAVAV-STCPTWR-SRRKRLRNKQVR-SINRYSSYISSLQVRSSAGSESCVA--EKEDFADEEDYIKAGGSELLFVQMQQSKNMDKQSKLADKLPKISIGDTILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWRDTIVYLDDDDPILIGRAYGRVSRHLLHEELLNRCVESSVSYLSSKVERIIEATNGQSLIECEHNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCVKQKVQCLGALYPTFLYAMPMSPTRVFFEETCLASNDAMPFDLLKKKLMSRLETMGVRVIKTYEEEWSYIPVGGSLPNTAQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIANILKRGHSKDMLTCSMSIENISMQAWNILWPQERKRQRAFFLFGLALILELDIEGIRTFFHTFFRLPDWMWQGFLGSTLSSADLVLFAFYMFVIAPNNMRMCLVRHLLSDPTGATMIRTYLT 583
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UAD9 ((Uncharacterized protein {ECO:0000313|EMBL:OAY27099.1}))
HSP 1 Score: 873.618 bits (2256), Expect = 0.000e+0
Identity = 428/533 (80.30%), Postives = 460/533 (86.30%), Query Frame = 0
Match: A0A2C9UAD9 ((Uncharacterized protein {ECO:0000313|EMBL:OAY27099.1}))
HSP 1 Score: 873.618 bits (2256), Expect = 0.000e+0
Identity = 428/533 (80.30%), Postives = 460/533 (86.30%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRC----VKEVS----SCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLT 529
CIG RNFT MAVFS R R R R G S RC V+ S SCVA+ EEFAD+ED++KAGGSEL++VQMQ+NK M+ QSKLA KLP IPI D VLDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVWRDTIVYLDD DPI+IGRAYGRVSRHLLHEELL+RCVESGVSYLSSKVE+IIEA DGHSLV CE +IV+ CRLATVASGAASGKLL YEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY KQKVP +EAEYPTFLY MPMS TR+FFEETCLASKDAMPFDLLK+KLMSRL+TMGIR+ KTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+ IANILK N +++ R NISMQAW TLWPQERKRQRAFFLFGLALILQLDI+GIRTFF TFFRLP+WMWQGFLGS+LSS DLV+FAFYMF IAP+ +RM LVRHL+SDPTGATM++TYLT
Sbjct: 3 CIGARNFTAMAVFSFSAGTSRRRTLRTYRQ------GGLSNKRCHLYRVRASSAGTDSCVAI--KEEFADEEDYIKAGGSELVYVQMQQNKDMEQQSKLADKLPPIPIGDEVLDLVVIGCGPAGLALAAESAKLGLSVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWRDTIVYLDDDDPILIGRAYGRVSRHLLHEELLRRCVESGVSYLSSKVERIIEASDGHSLVACERDIVVSCRLATVASGAASGKLLLYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYMKQKVPCLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKRKLMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASTIANILKQDHPNAKLHHKRSNANISMQAWDTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFHTFFRLPSWMWQGFLGSTLSSADLVVFAFYMFFIAPNDMRMCLVRHLVSDPTGATMIRTYLT 527
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R480 ((Lycopene epsilon cyclase {ECO:0000313|EMBL:PSS20792.1}))
HSP 1 Score: 873.618 bits (2256), Expect = 0.000e+0
Identity = 416/529 (78.64%), Postives = 456/529 (86.20%), Query Frame = 0
Match: A0A2R6R480 ((Lycopene epsilon cyclase {ECO:0000313|EMBL:PSS20792.1}))
HSP 1 Score: 873.618 bits (2256), Expect = 0.000e+0
Identity = 416/529 (78.64%), Postives = 456/529 (86.20%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVS-----CGRKSEMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYL 528
CIG RNF+ MAV S CP WR R++ + N+ + C + RC + V EEFAD+ED+VKAGGSELLFVQMQ+NK MD QSKL KLP I + +++LDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGL GCIEH+W+DTIVYLDD DPIMIGRAYGRVSRHLLHEELLKRCVESGV YLSSKVE+IIEA +GHSL+ECE NIV+PCRLATVASGAASGKLLQYEVGGPRVSVQTAYG+EVEVENNPYDPSLMVFMDYRDY KQKV +EA+YPTFLY MPMSPTR+FFEETCLASKDAMPFDLLKKKL+SRL+ MG+R+ K YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP YA+VI+NILK I+ R TENISMQAW TLWPQERKRQRAFFLFGLALILQLDIDGIR FFQTFFRLPTWMWQGFLGS+LSS DL LFAFYMF+IAP+++R L+RHLLSDPTGA M++TYL
Sbjct: 3 CIGARNFSAMAV-SACPYWRSRRKRSGNKQNLLIHWYNSWCKSSLQARCSSSAGNDTCVAVKEEFADEEDYVKAGGSELLFVQMQQNKHMDKQSKLTDKLPGISVGNTILDLVVIGCGPAGLALAAESAKLGLSVGLIGPDLPFTNNYGVWEDEFRDLGLAGCIEHIWQDTIVYLDDNDPIMIGRAYGRVSRHLLHEELLKRCVESGVLYLSSKVERIIEATNGHSLIECEQNIVVPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGIEVEVENNPYDPSLMVFMDYRDYVKQKVECLEAQYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLISRLEMMGVRILKFYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVISNILKQGHSKEKISQSRSTENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIDGIREFFQTFFRLPTWMWQGFLGSTLSSADLALFAFYMFVIAPNNMRKCLIRHLLSDPTGAIMLRTYL 530
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5ZFW6 ((lycopene epsilon cyclase, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_022751743.1}))
HSP 1 Score: 870.152 bits (2247), Expect = 0.000e+0
Identity = 422/528 (79.92%), Postives = 456/528 (86.36%), Query Frame = 0
Match: A0A6P5ZFW6 ((lycopene epsilon cyclase, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_022751743.1}))
HSP 1 Score: 870.152 bits (2247), Expect = 0.000e+0
Identity = 422/528 (79.92%), Postives = 456/528 (86.36%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKE---VSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLT 529
C+G RNF MAV STC TWR RR +R S R + SCVAV ED FAD+ED++KAGGSELLFVQMQ+NK MD QSKLA KLP I I D+VLDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLE CIEHVW+DTIVYLDD PIMIGRAYGRVSRHLLHEELL+RCVESGV YLSSKVE IIE DGHSLV CE+N V+PCRL TVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY KQ+ P +EA+YPTFLY MP+S TR+FFEETCLASKDAMPFDLLKKKL+SRL+TMGI+++K YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+VIANILK GM+N R NISMQAW TLWPQERKRQR+FFLFGLALILQLDI+GIRTFF TFFRLP+WMWQGFLGS+LSS DLVLFAFYMF++AP+ +RM LVRHLLSDPTGATM++TYLT
Sbjct: 5 CVGSRNFAAMAV-STCATWRSRRRNLMRTKTALRSHHRFISFKVRASGAGSESCVAVKED--FADEEDYIKAGGSELLFVQMQQNKEMDKQSKLADKLPPISIGDNVLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLERCIEHVWQDTIVYLDDDKPIMIGRAYGRVSRHLLHEELLRRCVESGVVYLSSKVETIIEGTDGHSLVACEDNRVVPCRLVTVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYAKQEFPCLEAQYPTFLYAMPVSSTRVFFEETCLASKDAMPFDLLKKKLVSRLETMGIQISKVYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASVIANILKKDHSKGMLNSVRNNGNISMQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRTFFHTFFRLPSWMWQGFLGSTLSSADLVLFAFYMFVLAPNDMRMCLVRHLLSDPTGATMIRTYLT 529
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KCI7 ((Uncharacterized protein {ECO:0000313|EMBL:KDP33847.1}))
HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 423/529 (79.96%), Postives = 462/529 (87.33%), Query Frame = 0
Match: A0A067KCI7 ((Uncharacterized protein {ECO:0000313|EMBL:KDP33847.1}))
HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 423/529 (79.96%), Postives = 462/529 (87.33%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVS----SCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLT 529
CIG RNF VFS PT R RR+ LR S ++S + V+ S SCVA+ EE+AD+ED++KAGGSEL+FV+MQ+NK M+ QSKLA KLP IPI D VLDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF LGL+GCIEHVW+DTIVYLD+ DPI+IGRAYGRVSRHLLHEELL+RCVESGVSYLSSKVE+IIEA +GHSLV CE++IV+PCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY KQKVP +EAEYPTFLY MPMSPTR+FFEETCLASKDAMPFDLLKKKLMSRL+TM IR+ KTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+VIANILK M+ + NISMQAW LWPQERKRQRAFFLFGLALILQLDI+GIRTFF TFFRLP WMWQGFLGS+LSS DL+LFAFYMF+IAP+ +RM LVRHLLSDPTGATM++TYLT
Sbjct: 3 CIGARNFAATTVFS-FPTGRT-RRRILRTSKHVGISEKRSRLYQVRASSAGSESCVAI--KEEYADEEDYIKAGGSELVFVEMQQNKDMEKQSKLADKLPPIPIGDDVLDLVVIGCGPAGLALAAESAKLGLSVGLIGPDLPFTNNYGVWEDEFKGLGLDGCIEHVWQDTIVYLDNDDPILIGRAYGRVSRHLLHEELLRRCVESGVSYLSSKVERIIEAANGHSLVACEHDIVVPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYIKQKVPCLEAEYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMSRLETMQIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASVIANILKQGHSKSMLTHKISNANISMQAWNALWPQERKRQRAFFLFGLALILQLDIEGIRTFFHTFFRLPNWMWQGFLGSTLSSADLILFAFYMFVIAPNDMRMCLVRHLLSDPTGATMIRTYLT 527
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061GLV2 ((Lycopene beta/epsilon cyclase protein {ECO:0000313|EMBL:EOY30388.1}))
HSP 1 Score: 868.226 bits (2242), Expect = 0.000e+0
Identity = 430/537 (80.07%), Postives = 456/537 (84.92%), Query Frame = 0
Match: A0A061GLV2 ((Lycopene beta/epsilon cyclase protein {ECO:0000313|EMBL:EOY30388.1}))
HSP 1 Score: 868.226 bits (2242), Expect = 0.000e+0
Identity = 430/537 (80.07%), Postives = 456/537 (84.92%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVS------------CGRKSEMRCVKEVSSCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLT 529
C+G R F MAV STC WR RR L R+ +S GR SE SCVAV ED FAD+EDF+KAGGSEL+FVQMQ+NK MD QSKLA KLP I I D+VLDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVWRDTIVYLDD PIMIGRAYGRVSR LLHEELL+RCVESGV YLSSKVE IIEA DGH+LV CE+N V+PCRL TVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDY KQ+VP EA+YPTFLY MP+S TR+FFEETCLASKDAMPFDLLKKKLMSRL+TMGI + K YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+VIANILK GM R NISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFF TFFRLP+WMWQGFLGS+LSS DLVLFAFYMF+IAP+ LRM LVRHLLSDPTGATM++TY+T
Sbjct: 5 CVGARYFAAMAV-STCAAWR-SRRGNLMRTKTVLSKNHGFISFKVRASGRGSE--------SCVAVKED--FADEEDFIKAGGSELVFVQMQQNKEMDKQSKLADKLPPISIGDNVLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRRLLHEELLRRCVESGVMYLSSKVETIIEATDGHNLVACEHNRVVPCRLVTVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYAKQEVPCSEAQYPTFLYAMPLSSTRVFFEETCLASKDAMPFDLLKKKLMSRLETMGITILKVYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASVIANILKKDHSKGMRTSERNNGNISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFNTFFRLPSWMWQGFLGSNLSSADLVLFAFYMFVIAPNDLRMCLVRHLLSDPTGATMIRTYIT 529
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G232 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5934783.1}))
HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 422/532 (79.32%), Postives = 464/532 (87.22%), Query Frame = 0
Match: A0A7J7G232 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5934783.1}))
HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 422/532 (79.32%), Postives = 464/532 (87.22%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKSEMRCVKEVSS------CVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEE-EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLT 529
CIG RNF MAV STCPTWR R+KR R + +V S ++ SS CVA E FAD+ED++KAGGSELLFVQMQ+NK M+ QSKLA KLPRI + +++LDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVW DTIVYLDD DPI+IGRAYGRVSR+LLHEEL+KRCVESGVSYLSSKVE+IIE+ +GHSL+ECE N+V+PCRLATVASGAASGKLLQYEVGGPRVSVQTAYG+EVEVENNPYDP+LMVFMDYRDY K KV +EA+YPTFLY MPMSPTR+FFEETCLASKDAMPFD+LKKKL+SRL+TMG+RV KTYEE EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAP YA+VIANILK ++ TENISM AW TLWPQERKRQRAFFLFGLALILQLDIDGIRTFF TFFRLPTWMWQGFLGS+LSS DL LFAFYMF+IAP+++RM LVRHLLSDPTGATM++TYLT
Sbjct: 3 CIGARNFAAMAV-STCPTWRY-RKKRQRNTLTRVIHRHSSYTSSLRVRSSSAGSDSCVAF--KEGFADEEDYIKAGGSELLFVQMQQNKLMEKQSKLADKLPRISVGNTILDLVVIGCGPAGLALAAESAKLGLSVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWGDTIVYLDDNDPILIGRAYGRVSRYLLHEELVKRCVESGVSYLSSKVERIIESTNGHSLIECEQNVVVPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGMEVEVENNPYDPNLMVFMDYRDYVKPKVQCLEAQYPTFLYAMPMSPTRVFFEETCLASKDAMPFDILKKKLISRLETMGVRVIKTYEEVEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIANILKQGHSRDKLSRSWSTENISMLAWNTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFHTFFRLPTWMWQGFLGSTLSSADLALFAFYMFVIAPNNMRMCLVRHLLSDPTGATMIRTYLT 530
BLAST of XM_017364541.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZNX0 ((lycopene epsilon cyclase, chloroplastic {ECO:0000313|RefSeq:XP_021276527.1}))
HSP 1 Score: 862.448 bits (2227), Expect = 0.000e+0
Identity = 425/529 (80.34%), Postives = 454/529 (85.82%), Query Frame = 0
Match: A0A6J0ZNX0 ((lycopene epsilon cyclase, chloroplastic {ECO:0000313|RefSeq:XP_021276527.1}))
HSP 1 Score: 862.448 bits (2227), Expect = 0.000e+0
Identity = 425/529 (80.34%), Postives = 454/529 (85.82%), Query Frame = 0
Query: 5 CIGGRNFTTMAVFSTCPTWRRPRRKRLRRSNVKVSCGRKS---EMRCVKEVS-SCVAVVEDEEFADKEDFVKAGGSELLFVQMQRNKAMDTQSKLAHKLPRIPIRDSVLDLVVIGCGPAGLALAAESAKLGLRVGLIGPDLPFTNNYGVWEDEFIDLGLEGCIEHVWRDTIVYLDDGDPIMIGRAYGRVSRHLLHEELLKRCVESGVSYLSSKVEKIIEAGDGHSLVECENNIVIPCRLATVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYTKQKVPGVEAEYPTFLYVMPMSPTRIFFEETCLASKDAMPFDLLKKKLMSRLQTMGIRVAKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYAAVIANILKSSQMNGMINYGRYTENISMQAWKTLWPQERKRQRAFFLFGLALILQLDIDGIRTFFQTFFRLPTWMWQGFLGSSLSSVDLVLFAFYMFIIAPHHLRMSLVRHLLSDPTGATMVKTYLT 529
C+G R F MAV STC WR RR L ++ +S + ++R S SCVAV ED FAD+EDF+KAGGSELLFVQMQ+NK MD QSKLA KLP I I D+VLDLVVIGCGPAGLALAAESAK GL VGLIGPDLPFTNNYGVWEDEF DLGLEGCIEHVWRDTIVYLDD PIMIGRAYGRVSRH LHEELL+RCVESGV YLSSKVE IIEA DGH+LV CE+N V+PCRL TVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVF YRDY KQ+VPG EA+YPTFLY MP+S TR+FFEETCLASKDAMPFDLLKKKLMSRL+TMGIR+ K YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYA+VIANILK GM R NISMQAWKTLWPQERKRQRAFFLFGLALILQLDI GIRTFF TFFRLP+WMWQGFLGS+LSS DLVLFAFYMF+ AP+ LRM LVRHLLSDPTGATM++TY+T
Sbjct: 5 CVGARYFAAMAV-STCDAWRS-RRGNLMKTKTALSNNHRFISFKVRASGAGSKSCVAVKED--FADEEDFIKAGGSELLFVQMQQNKEMDKQSKLADKLPPISIGDNVLDLVVIGCGPAGLALAAESAKFGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRHSLHEELLRRCVESGVMYLSSKVETIIEATDGHNLVACEHNRVVPCRLVTVASGAASGKLLQYEVGGPRVSVQTAYGVEVEVENNPYDPSLMVFAIYRDYAKQEVPGSEAQYPTFLYAMPLSSTRVFFEETCLASKDAMPFDLLKKKLMSRLETMGIRILKVYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPNYASVIANILKKDHSKGMRTSERNNGNISMQAWKTLWPQERKRQRAFFLFGLALILQLDIGGIRTFFHTFFRLPSWMWQGFLGSNLSSADLVLFAFYMFVTAPNDLRMCLVRHLLSDPTGATMIRTYIT 529
| Match Name | Stats | Description |
|---|---|---|
| Q2VEX5 | E-Value: 0.000e+0, PID: 99.43 | (Putative lycopene epsilon cyclase {ECO:0000313|EM... [more] |
| A0A5J4ZWV0 | E-Value: 0.000e+0, PID: 80.94 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8523... [more] |
| A0A5B6YMW7 | E-Value: 0.000e+0, PID: 80.79 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3313... [more] |
| A0A2C9UAD9 | E-Value: 0.000e+0, PID: 80.30 | (Uncharacterized protein {ECO:0000313|EMBL:OAY2709... [more] |
| A0A2R6R480 | E-Value: 0.000e+0, PID: 78.64 | (Lycopene epsilon cyclase {ECO:0000313|EMBL:PSS207... [more] |
| A0A6P5ZFW6 | E-Value: 0.000e+0, PID: 79.92 | (lycopene epsilon cyclase, chloroplastic isoform X... [more] |
| A0A067KCI7 | E-Value: 0.000e+0, PID: 79.96 | (Uncharacterized protein {ECO:0000313|EMBL:KDP3384... [more] |
| A0A061GLV2 | E-Value: 0.000e+0, PID: 80.07 | (Lycopene beta/epsilon cyclase protein {ECO:000031... [more] |
| A0A7J7G232 | E-Value: 0.000e+0, PID: 79.32 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5934... [more] |
| A0A6J0ZNX0 | E-Value: 0.000e+0, PID: 80.34 | (lycopene epsilon cyclase, chloroplastic {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |