XM_017368046.1

Resource Type: 
Polypeptide
Name: 
XM_017368046.1
Identifier: 
XM_017368046.1-protein
Sequence: 
MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETT
YRLNPTFQKNLQNHILHGGVLPREPMKINVRLPSSADLDAYASGQWESFL
LHLISSTEAEATRNISSSMMKIFQRGLLSQRDREAPMLTESGFQFLLMDT
NAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQ
GSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVV
ETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGI
TSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLY
DEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK
Sequence Length: 
399
Sequence Checksum: 
b5b40ccabe0ddc81350233af0b72fb18
View location in JBrowse: 
DCARv2_Chr8:15300039..15306752-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017368046.1, derives from mRNA, XM_017368046.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L2KPF7 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 312/402 (77.61%), Postives = 356/402 (88.56%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEAT-RNISSSMMKIFQRGLLSQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            +LYI  P+  +S++ WV A+G SKHRVA+D+L+QLR+FTETVD RK+E TYRLNP FQ NL+ HI+HGGVLPREPM   I VRLPS  +LD Y++ QWE FLLHLI+S EAEAT ++IS+SMMK+FQRGLLSQRDRE  +LTESGFQFLLMDTNAQLWY+IREYI++ E+RGVD++DLISFLLELSFHV+GEAYN+NTL   Q + VKDLADLGL+KLQQG K+SWFIPTKLA NLSISLSDASSRKQGYVVVETNFRLYAY+TSKLHCEIL+LF+R+EYQLPNLIVG+ITKENLYKAF NGITSDQII FLQQNAHPRVAE+VPSVPENVTDQIRLWESDLNRVEMTP+H +D+FPSRD FEAACDFAREY  LLWEDS KMR+IVK E Y HMK FL  +
Sbjct:   51 LLYIDVPVTASSLQEWVLADGASKHRVAVDRLIQLRVFTETVD-RKKEATYRLNPMFQMNLREHIVHGGVLPREPMAANITVRLPSLEELDNYSAQQWECFLLHLINSAEAEATTKSISASMMKVFQRGLLSQRDREGALLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDSADLISFLLELSFHVTGEAYNINTLDDIQRTTVKDLADLGLIKLQQGRKDSWFIPTKLATNLSISLSDASSRKQGYVVVETNFRLYAYSTSKLHCEILKLFSRVEYQLPNLIVGSITKENLYKAFANGITSDQIISFLQQNAHPRVAERVPSVPENVTDQIRLWESDLNRVEMTPAHFFDDFPSRDVFEAACDFAREYSSLLWEDSKKMRLIVKTELYAHMKEFLSHQ 451
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GYB8 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 313/402 (77.86%), Postives = 355/402 (88.31%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISS-TEAEATRNISSSMMKIFQRGLLSQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            MLYI  P+   SM+ WV A+G SKH VAID+L+QLRLFTE VD RK+ETTYRLNPTFQ NLQ HI+HGGVLPREPM   I VRLPS  DLDAYA+ QWE FLLHLISS T+ E T N SSS+MKIFQRGLLSQRD+E P LTESGFQFLLMDTNAQLWY+IREYIT+ EERG+D++DLISF+LELSFHV+GEAYNMNTL+ SQ +++KDLADLGLVKLQQG KESWFIPTKLA NLSISLSD SSRK G+VVVETNFR+YAY+TSKLHCEILRLF+R+EYQLPNLIV AITKENLY AF+NGI ++QII FLQQNAHPRVAE+VPSVPENVTDQIRLWESD+NRVE+TP+H YDEFP+R+ F+AACDFAREYGGLLWEDS  MR++VKAE   HM+ FLR++
Sbjct:   51 MLYIDVPVSAKSMQEWVLADGYSKHNVAIDRLIQLRLFTEAVD-RKKETTYRLNPTFQINLQKHIIHGGVLPREPMPSNITVRLPSLEDLDAYAAEQWECFLLHLISSSTQGEKTTNFSSSLMKIFQRGLLSQRDKEPPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGLDSADLISFMLELSFHVTGEAYNMNTLTDSQRNVIKDLADLGLVKLQQGRKESWFIPTKLATNLSISLSDTSSRKLGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVAAITKENLYNAFENGIMAEQIISFLQQNAHPRVAERVPSVPENVTDQIRLWESDMNRVEITPAHFYDEFPTREVFDAACDFAREYGGLLWEDSKTMRLVVKAEILMHMRDFLRRE 451
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1LYY2 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 658.677 bits (1698), Expect = 0.000e+0
Identity = 311/402 (77.36%), Postives = 352/402 (87.56%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEAT-RNISSSMMKIFQRGLLSQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            +LYI  P+   S++ WV A+G SKHRVA+D+L+QLR+FTETVD RK+E TYRLNP FQ NL+ HI+HGGVLPREPM   I VRLPS  +LD YA+ QWE FLLHLI+S EAE T ++IS+SMMK+FQRGLLSQRDRE   LTESGFQFLLMDTNAQLWY+IREYI++ E+RGVD++DLISFLLELSFHV+GEAYN+NTL   Q + VKDLADLGL+KLQQG K+SWFIPTKLA NLSISLSDASSRKQGYVVVETNFRLYAY+TSKLHCEIL+LF+R+EYQLPNLIVG+ITKENLYKAF NGIT+DQII FLQQNAHPRVAE+VPSVPENVTDQIRLWESDLNRVEMTP+H  D+FPSRD FEAACDFAREY  LLWEDS KMR+IVK E Y HMK FL  +
Sbjct:   51 LLYIDVPVTANSLQEWVLADGASKHRVAVDRLIQLRVFTETVD-RKKEATYRLNPMFQMNLREHIVHGGVLPREPMAANITVRLPSLEELDNYAAQQWECFLLHLINSAEAEVTTKSISASMMKVFQRGLLSQRDREGSRLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDSADLISFLLELSFHVTGEAYNINTLDDVQRTTVKDLADLGLIKLQQGRKDSWFIPTKLATNLSISLSDASSRKQGYVVVETNFRLYAYSTSKLHCEILKLFSRVEYQLPNLIVGSITKENLYKAFANGITADQIISFLQQNAHPRVAERVPSVPENVTDQIRLWESDLNRVEMTPAHFLDDFPSRDVFEAACDFAREYSSLLWEDSKKMRLIVKTEIYAHMKEFLNNQ 451
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9IAI3 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 307/402 (76.37%), Postives = 357/402 (88.81%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEATRNISSSMMKIFQRGLLSQRD-REAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            +LYI  P+    +E WV  +G+SKH+VAID+L+QLR+ TETV+ RK+ETTY  NPTFQ+NLQ HI+HGG+LPREPM   I VRLPS  +LDAYA+ QWE FLLHLI+S E E + NI SSMMK+FQRGLLSQRD +E P LTESGFQFLLMDTNAQLWY++REYIT+CE+ GVDT+DLISFLLELSFHV+G+AYN+NTLS  Q +I+KDLADLGLVKLQQG KESWFIPTKLA NLSISL+D SSRKQG+VVVETNFR+YAY+TSKLHCEILRLF+RIEYQLPNLIVGAITKE+LYKAFQNGIT++QI+ FLQQNAHPRVAE++P+VPENVTDQIRLWESDLNRVEM P+HLYDEFPSR+ FEAACDFAREYGGLLWE+S KMR++VKAE +  MK FLR++
Sbjct:   51 LLYIEGPVTAKWLEEWVLPDGVSKHKVAIDRLIQLRVLTETVE-RKKETTYLFNPTFQRNLQKHIVHGGILPREPMPSNITVRLPSLEELDAYAAQQWELFLLHLINSAEVEKSTNIRSSMMKVFQRGLLSQRDEKEPPKLTESGFQFLLMDTNAQLWYIVREYITNCEDHGVDTADLISFLLELSFHVTGQAYNLNTLSDIQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSISLADTSSRKQGFVVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYKAFQNGITAEQIVSFLQQNAHPRVAERIPTVPENVTDQIRLWESDLNRVEMAPAHLYDEFPSREVFEAACDFAREYGGLLWENSKKMRLVVKAEIFTQMKEFLRRQ 451
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830D7S9 ((General transcription factor iih subunit 4 {ECO:0000313|EMBL:GFQ06703.1}))

HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 311/402 (77.36%), Postives = 355/402 (88.31%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEATRNISSSMMKIFQRGLLSQRDREAPM-LTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            +LYI  P+ +  +E WV  +G+SKHRVA+D+L+QLR+ TETVD RK+ETTY +N TFQ NLQ HI+HGGVLPREPM   I VRLPS  DLDAYA  QWE FLLHLI+S+EAE + NISSSMMKIFQRGLLSQ+D + P  LTESGFQFLLMDTNAQLWY++REYIT+CEE GVDT+DLISFLLELSFHV+G+AYN+NTLS  Q SIVKDL DLGLVKLQQG KESWFIPTKLA NLSISL+D SSRK+GYVVVETNFR+YAY+TSKLHCEILRLF+RIEYQLPNLIVGAITKE+L KAF NGIT++QI+ FLQQNAHPRVAE++PSVPENVTDQIRLWE+DLNRVEMTP+HLYDEFPSRD FEAACDFAREYGGLLWE+S KMR++VK E +  MK FLR++
Sbjct:   51 LLYIDGPVSSKLLEEWVLPDGVSKHRVAVDRLIQLRVLTETVD-RKKETTYLVNRTFQHNLQKHIVHGGVLPREPMPSNITVRLPSLEDLDAYAVQQWELFLLHLINSSEAEKSTNISSSMMKIFQRGLLSQKDDKEPAKLTESGFQFLLMDTNAQLWYIVREYITNCEEHGVDTADLISFLLELSFHVTGKAYNLNTLSDRQRSIVKDLTDLGLVKLQQGRKESWFIPTKLATNLSISLADTSSRKEGYVVVETNFRVYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLNKAFLNGITAEQIVSFLQQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEMTPAHLYDEFPSRDVFEAACDFAREYGGLLWENSKKMRIVVKGEIFTQMKEFLRRQ 451
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5BMX1 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 306/400 (76.50%), Postives = 353/400 (88.25%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEATRNISSSMMKIFQRGLLSQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQ 398
            MLYI  P+   +ME WV A+G SKHRVAID+L+QLR+FTET D RK+ET+YRLNPTFQ NLQ H+++GGVLPREPM   I VRLPS  DL+AYA GQWE FLL LISST+ E   N SSS+MK+FQRGLL+QR++EAP LTESGFQFLLMDTNAQLWY++REYI++ EERGVD +DLISFLLELSFHV+GEAYN+NTL+  Q + +KDL DLGLVKLQQG KESWFIPTKLA NLS+SLSD SSRKQG+VVVETNFRLYAY++SKLHCEILRLF+R+EYQLPNLIVGAITKE+LY AF+NGIT++QII FLQQNAHPRVAE+ P+VPENVTDQIRLWE+DLNRVE  PSHLYDEFPSRD FEAACDFAREYGGLLWEDS KMR++VKAE + HM+ +LR+
Sbjct:   51 MLYIDVPVTAKAMEEWVLADGFSKHRVAIDRLIQLRVFTETSD-RKKETSYRLNPTFQTNLQKHLIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLTQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLRR 449
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4AUE0 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 653.284 bits (1684), Expect = 0.000e+0
Identity = 311/402 (77.36%), Postives = 352/402 (87.56%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEATRNISSSMMKIFQRGLLSQRD-REAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            +LYI  PI   SME WV  +G SKH+VAID+L+QLR+ TET D RK+E  YRLNP FQ NLQ HI+HGGVLPREPM   I VRLPS  +L+A+A  QWE FLLHLISS+EA  T NISSSMMKIFQRGLLSQRD RE P LTESGFQFLLMDTNAQLWY+IREYIT+ EERGVD++DLI+FLLELSFHV+G+AYN NTL+  Q SI KDL+DLGLVKLQQG KESWFIPTKLA NLSISL+D +SRKQG++V+ETNFRLYAY+TSKLHCEILRLFAR+EYQLPNLIVGAITKE+LYKAFQNGIT++QII FLQQNAHPRVAE++PSVPENVTDQIRLWESDLNRVEM P+HLYDEFPS+D FEAACDFAREYGGLLWEDS ++R+IVKA+    MK FLR++
Sbjct:   51 LLYIDIPISAKSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFD-RKKEAMYRLNPKFQFNLQKHIVHGGVLPREPMPSNITVRLPSLEELEAFAVEQWECFLLHLISSSEAGKTTNISSSMMKIFQRGLLSQRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTLTDLQRSITKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTSRKQGFIVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIISFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMIPAHLYDEFPSKDVFEAACDFAREYGGLLWEDSKQLRIIVKADILTEMKEFLRRQ 451
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4AV23 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 311/402 (77.36%), Postives = 352/402 (87.56%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEATRNISSSMMKIFQRGLLSQRD-REAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            +LYI  PI   SME WV  +G SKH+VAID+L+QLR+ TET D RK+E  YRLNP FQ NLQ HI+HGGVLPREPM   I VRLPS  +L+A+A  QWE FLLHLISS+EA  T NISSSMMKIFQRGLLSQRD RE P LTESGFQFLLMDTNAQLWY+IREYIT+ EERGVD++DLI+FLLELSFHV+G+AYN NTL+  Q SI KDL+DLGLVKLQQG KESWFIPTKLA NLSISL+D +SRKQG++V+ETNFRLYAY+TSKLHCEILRLFAR+EYQLPNLIVGAITKE+LYKAFQNGIT++QII FLQQNAHPRVAE++PSVPENVTDQIRLWESDLNRVEM P+HLYDEFPS+D FEAACDFAREYGGLLWEDS ++R+IVKA+    MK FLR++
Sbjct:   27 LLYIDIPISAKSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFD-RKKEAMYRLNPKFQFNLQKHIVHGGVLPREPMPSNITVRLPSLEELEAFAVEQWECFLLHLISSSEAGKTTNISSSMMKIFQRGLLSQRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTLTDLQRSITKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTSRKQGFIVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIISFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMIPAHLYDEFPSKDVFEAACDFAREYGGLLWEDSKQLRIIVKADILTEMKEFLRRQ 427
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZSH0 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 318/401 (79.30%), Postives = 358/401 (89.28%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEATRNISSSMMKIFQRGLLSQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            MLYI  PI   SME WV A+G SKH+VAID+L+QLRL TETVD RK+ET+YRLN TFQ NLQ HI+HGGVLPREPM   I VRLPS  DL+AYAS QWESFLLHLISS++AE   N SSSMMKIFQRGLLSQRD+EAP LTESGFQFLLMDTNAQLWY++REYIT+ EERGVD++DLISFLLELSFHV+GEAYN+NTL+  Q +  KDLADLGLVKLQQG KESWFIPTKLA NLSISLSD+SSRKQG+VVVETNFR+YAY+TSKLHCEILRLF+RIEYQLPNLIVGAITKE+LY AF+NGIT++QII FLQQNAHPRVAE++PSV ENVTDQIRLWESD+NRVEMTP+HL DEFPSRD FEAACDFAREYGG+LWEDS +MR++VKAE + HM+ FLR +
Sbjct:   51 MLYIDVPISAKSMEEWVLADGFSKHKVAIDRLIQLRLLTETVD-RKKETSYRLNSTFQINLQKHIVHGGVLPREPMPSNITVRLPSLDDLEAYASEQWESFLLHLISSSQAERMTNFSSSMMKIFQRGLLSQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYITNSEERGVDSADLISFLLELSFHVTGEAYNLNTLTDFQRNATKDLADLGLVKLQQGRKESWFIPTKLATNLSISLSDSSSRKQGFVVVETNFRIYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAERIPSVTENVTDQIRLWESDMNRVEMTPAHLCDEFPSRDVFEAACDFAREYGGMLWEDSKQMRLVVKAEIHTHMREFLRSQ 450
[Close]
BLAST of XM_017368046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BRN4 (RNA polymerase II transcription factor B subunit 2 {ECO:0000256|RuleBase:RU364024})

HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 308/402 (76.62%), Postives = 352/402 (87.56%), Query Frame = 0
 
Query:    1 MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGVLPREPM--KINVRLPSSADLDAYASGQWESFLLHLISSTEAEATRNISSSMMKIFQRGLLSQRD-REAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQK 399
            MLYI  PI   SME WV  +G SKH+VAID+L+QLR+ TET D RK+E  Y+LNP FQ NLQ HI+HGGVLPREPM   I VRLPS  +L+AYA  QWE FLL+LISS+EA  T NISSSMMKIFQRGLLSQRD RE P LTESGFQFLLMDTNAQLWY+IREYIT+ EERGVD++DLI+FLLELSFHV+G+AYN NT++  Q SI+KDL+DLGLVKLQQG KESWFIPTKLA NLSISL+D ++RKQG++V+ETNFRLYAY+TSKLHCEILRLFAR+EYQLPNLIVGAI KE+LYKAFQNGITS+QI+ FLQQNAHPRVAE++PSVPENVTDQIRLWESDLNRVEMTP+H YDEFPS+D FEAACDFAREYGGLLWEDS +MR++VKA+    MK FLR++
Sbjct:   51 MLYIDIPITAKSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFD-RKKEAMYQLNPKFQFNLQKHIVHGGVLPREPMPSNITVRLPSLEELEAYAVEQWECFLLNLISSSEAGKTTNISSSMMKIFQRGLLSQRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTTRKQGFIVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAINKESLYKAFQNGITSEQIVSFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMTPAHFYDEFPSKDVFEAACDFAREYGGLLWEDSKRMRLVVKADILAEMKEFLRRQ 451
Match NameStatsDescription
A0A6L2KPF7E-Value: 0.000e+0, PID: 77.61RNA polymerase II transcription factor B subunit 2... [more]
A0A7J7GYB8E-Value: 0.000e+0, PID: 77.86RNA polymerase II transcription factor B subunit 2... [more]
A0A2U1LYY2E-Value: 0.000e+0, PID: 77.36RNA polymerase II transcription factor B subunit 2... [more]
A0A2G9IAI3E-Value: 0.000e+0, PID: 76.37RNA polymerase II transcription factor B subunit 2... [more]
A0A830D7S9E-Value: 0.000e+0, PID: 77.36(General transcription factor iih subunit 4 {ECO:0... [more]
A5BMX1E-Value: 0.000e+0, PID: 76.50RNA polymerase II transcription factor B subunit 2... [more]
A0A1S4AUE0E-Value: 0.000e+0, PID: 77.36RNA polymerase II transcription factor B subunit 2... [more]
A0A1S4AV23E-Value: 0.000e+0, PID: 77.36RNA polymerase II transcription factor B subunit 2... [more]
A0A5B6ZSH0E-Value: 0.000e+0, PID: 79.30RNA polymerase II transcription factor B subunit 2... [more]
A0A6N2BRN4E-Value: 0.000e+0, PID: 76.62RNA polymerase II transcription factor B subunit 2... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.