XM_017367010.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017367010.1

Identifier:

XM_017367010.1-protein

Sequence:

MRAHELSSYLVFLALIISNSSARLSGNERDQQALLAFRAKIFNDPLGVFS
SWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEI
ILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKL
FSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLS
DNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENN
NLGLGEEDDSNFF

Sequence Length:

263

Sequence Checksum:

4113ce84b07599c6b5482c01dee21831

View location in JBrowse:

DCARv2_Chr8:21986972..21987763+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017367010.1, derives from mRNA, XM_017367010.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2RCC8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 227.639 bits (579), Expect = 1.065e-66
Identity = 133/305 (43.61%), Postives = 184/305 (60.33%), Query Frame = 0

Query:   10 LVFLAL--IISNSSARLSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKL---------------------------------------FS---------NKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNLGLGEEDDS-NFF 263
            LVF++L   I  +S    GNE D QALLAF+ +I  DP  VFSSWN SLHFC W G+TC ++H+RVT ++LS++ LVGSLSP +GN+SF+ EI+L +N + G IP EV RLFRL+VL L  N+F+G IP  L   + + IL++                                       FS         NKLSG+IP S++NLSS+  F L  N+L GS+P+    TLP+LQ   + +N+ +GS+P+SL NAS+LQ +++  NNF+G IS +   L  L+ L +E+NNLG G++DD  NFF
Sbjct:   35 LVFVSLGEKIIATSTYFGGNETDHQALLAFKRQITRDPENVFSSWNDSLHFCEWEGVTCGRKHRRVTVLDLSTRGLVGSLSPYIGNLSFIREIVLVNNTIGGKIPDEVGRLFRLRVLWLSNNSFQGEIPANLSHCSNIKILRVGINDLSGSIPKELASLSKLEFLALRTNNLMGGIPPFIGNFSSLQVLSAGENKLSGLIPPSLYNLSSIIHFALYKNKLSGSLPTNLFLTLPHLQWFLIFENQLTGSLPVSLSNASELQYLEVGMNNFTGKISDNFGGLHRLELLLIEDNNLGSGDDDDEMNFF 339

HSP 2 Score: 68.9366 bits (167), Expect = 1.319e-10
Identity = 62/196 (31.63%), Postives = 93/196 (47.45%), Query Frame = 0

Query:   94 MSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIP-------TSVFNLSSLNVFNLANNQLQG------SIPSGFGSTLPNLQKIQLSDNK------------------------FSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            +  L   ++++N L G++P  +     L+ L +G N F G I +  G L+RL +L +  N L             S+ N SSL   NL+ NQL+G      S+PS  G+ L +L+++ LS+NK                        F G IP SL ++  +Q +DL  NNFS  I        +L+KLSL+N NL
Sbjct:  266 LPHLQWFLIFENQLTGSLPVSLSNASELQYLEVGMNNFTGKISDNFGGLHRLELLLIEDNNLGSGDDDDEMNFFQSLVNCSSLRKINLSQNQLKGQNLFVGSLPSEVGN-LVHLKELDLSENKLFGEIPNSLALCTSLEYLCLEGNLFQGEIPTSLSSSRGIQVMDLSRNNFSSQIPN------FLEKLSLKNLNL 454

HSP 3 Score: 58.5362 bits (140), Expect = 3.444e-7
Identity = 49/137 (35.77%), Postives = 67/137 (48.91%), Query Frame = 0

Query:   93 NMSFLSEIILYDNHLQG------AIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMS--LYNASKLQTI 221
            N S L +I L  N L+G      ++P EV  L  LK L+L +N   G IPN+L     L  L L  N   G IPTS+ +   + V +L+ N     IP+ F   L +L+ + LS N F G +P      NAS +  I
Sbjct:  344 NCSSLRKINLSQNQLKGQNLFVGSLPSEVGNLVHLKELDLSENKLFGEIPNSLALCTSLEYLCLEGNLFQGEIPTSLSSSRGIQVMDLSRNNFSSQIPN-FLEKL-SLKNLNLSFNDFQGEVPTKGVFTNASTISLI 478

HSP 4 Score: 57.7658 bits (138), Expect = 7.110e-7
Identity = 46/128 (35.94%), Postives = 62/128 (48.44%), Query Frame = 0

Query:   64 ITCSKQHKRVTSINLSSKAL------VGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPS 185
            + CS   K    INLS   L      VGSL  +VGN+  L E+ L +N L G IP  +     L+ L L  N F+G IP +L     + ++ L  N  S  IP  +  L SL   NL+ N  QG +P+
Sbjct:  343 VNCSSLRK----INLSQNQLKGQNLFVGSLPSEVGNLVHLKELDLSENKLFGEIPNSLALCTSLEYLCLEGNLFQGEIPTSLSSSRGIQVMDLSRNNFSSQIPNFLEKL-SLKNLNLSFNDFQGEVPT 465

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DZ98 ((Ras-related small GTP-binding family protein {ECO:0000313|EMBL:GFS45502.1}))

HSP 1 Score: 223.402 bits (568), Expect = 8.081e-66
Identity = 124/264 (46.97%), Postives = 166/264 (62.88%), Query Frame = 0

Query:   24 LSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFE------------------------GSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNLGLGEEDDSNFF 263
            L GNE D+ ALLAF+A+I  DPLG  ++WN S+HFC W+G+TC ++H+RVT+I L  + L G +S  +GN+SFL E+ L++N L   IP EV  L RL+VL LG N+F                         GSIP  LGRL  L  L+L  N+L G IP S+FNLSSL++F +  NQ++GS+PSG G+TLPNL   ++  N  SG IP+S+ NA+KL  I L FN FSG +     +L  LQ+L L  N+LG+GE DD +F 
Sbjct:   34 LGGNETDRLALLAFKAEITADPLGALNTWNESIHFCQWLGVTCGRRHQRVTAIYLDHQKLSGPISLHIGNLSFLRELSLHNNSLSHQIPPEVGHLQRLQVLFLGNNSFSGEIPPNISACTNLVNLEIFGNRIGGSIPIALGRLTNLEHLQLAVNRLVGTIPFSIFNLSSLSLFIVLENQIRGSLPSGLGNTLPNLHFFEVGGNFLSGPIPVSISNATKLFHIGLLFNRFSGKVP-PLEKLHDLQRLILAQNHLGIGEADDLSFL 296

HSP 2 Score: 93.2041 bits (230), Expect = 6.595e-19
Identity = 62/193 (32.12%), Postives = 100/193 (51.81%), Query Frame = 0

Query:   76 INLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSV-----------------FNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNN 251
            +NL    +VGS+   +GN+  L  + L  NH    IP ++ +L +L++L+L  N F G IP T G L  L  L +  N+L G IP+S+                  NL ++   +++ N L G++PS  GS +  L+ + +  NK  G +P SL     ++ +DL  NNFSG I    +  ++L+KL+L  N+
Sbjct:  333 LNLQRNKIVGSIPTGIGNLVNLQALRLLGNHFTSTIPADLGKLDKLQILSLSSNNFYGEIPLTFGNLTLLTALSISQNRLHGSIPSSLGKCKMLAELRLDRNNLTGNLRNVEELDVSENMLVGNVPSDLGSCV-KLRLLYMEGNKLWGILPSSLSKLRGIEELDLSQNNFSGKIPAYLQDFVFLRKLNLSFND 524

HSP 3 Score: 74.7146 bits (182), Expect = 1.315e-12
Identity = 61/177 (34.46%), Postives = 91/177 (51.41%), Query Frame = 0

Query:   83 LVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQN------AFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLS-SLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            L G +   + N + L  I L  N   G +P  +++L  L+ L L QN      A + S   +L   + ++ L L  N   G++P ++ NLS +L+  NL  N++ GSIP+G G+ L NLQ ++L  N F+ +IP  L    KLQ + L  NNF G I +    L  L  LS+  N L
Sbjct:  238 LSGPIPVSISNATKLFHIGLLFNRFSGKVP-PLEKLHDLQRLILAQNHLGIGEADDLSFLTSLTNTSNMIHLNLADNDFGGMLPDTISNLSINLHYLNLQRNKIVGSIPTGIGN-LVNLQALRLLGNHFTSTIPADLGKLDKLQILSLSSNNFYGEIPLTFGNLTLLTALSISQNRL 412

HSP 4 Score: 72.7886 bits (177), Expect = 5.655e-12
Identity = 60/206 (29.13%), Postives = 94/206 (45.63%), Query Frame = 0

Query:   76 INLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEV-DRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIP-----------------------------TSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNN 251
            + L+   LVG++   + N+S LS  I+ +N ++G++P  + + L  L    +G N   G IP ++    +L  + L  N+ SG +P                             TS+ N S++   NLA+N   G +P    +   NL  + L  NK  GSIP  + N   LQ + L  N+F+  I  D  +L  LQ LSL +NN
Sbjct:  182 LQLAVNRLVGTIPFSIFNLSSLSLFIVLENQIRGSLPSGLGNTLPNLHFFEVGGNFLSGPIPVSISNATKLFHIGLLFNRFSGKVPPLEKLHDLQRLILAQNHLGIGEADDLSFLTSLTNTSNMIHLNLADNDFGGMLPDTISNLSINLHYLNLQRNKIVGSIPTGIGNLVNLQALRLLGNHFTSTIPADLGKLDKLQILSLSSNN 387

HSP 5 Score: 72.0182 bits (175), Expect = 1.274e-11
Identity = 49/139 (35.25%), Postives = 68/139 (48.92%), Query Frame = 0

Query:   93 NMSFLSEIILYDNHLQGAIPQEVDRL-FRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSG 230
            N S +  + L DN   G +P  +  L   L  LNL +N   GSIP  +G L  L  L+L  N  +  IP  +  L  L + +L++N   G IP  FG+ L  L  + +S N+  GSIP SL     L  + L  NN +G
Sbjct:  301 NTSNMIHLNLADNDFGGMLPDTISNLSINLHYLNLQRNKIVGSIPTGIGNLVNLQALRLLGNHFTSTIPADLGKLDKLQILSLSSNNFYGEIPLTFGN-LTLLTALSISQNRLHGSIPSSLGKCKMLAELRLDRNNLTG 438

HSP 6 Score: 70.0922 bits (170), Expect = 5.716e-11
Identity = 56/171 (32.75%), Postives = 79/171 (46.20%), Query Frame = 0

Query:   89 PDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLK------VLNLGQNAFEGSIPNTLGRLN-RLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            P +  +  L  +IL  NHL      ++  L  L        LNL  N F G +P+T+  L+  L  L L  NK+ G IPT + NL +L    L  N    +IP+  G  L  LQ + LS N F G IP++  N + L  + +  N   G I     +   L +L L+ NNL
Sbjct:  267 PPLEKLHDLQRLILAQNHLGIGEADDLSFLTSLTNTSNMIHLNLADNDFGGMLPDTISNLSINLHYLNLQRNKIVGSIPTGIGNLVNLQALRLLGNHFTSTIPADLGK-LDKLQILSLSSNNFYGEIPLTFGNLTLLTALSISQNRLHGSIPSSLGKCKMLAELRLDRNNL 436

HSP 7 Score: 51.6026 bits (122), Expect = 7.735e-5
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 0

Query:   71 KRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSG-----FGST-------LPNLQKIQLSDNKFSGSIPMSLYNASKL 218
            + V  +++S   LVG++  D+G+   L  + +  N L G +P  + +L  ++ L+L QN F G IP  L     L  L L  N   GV+P      ++  VF L N +L G    G     FG         L    + + +DN F+ S   +L+N +K+
Sbjct:  441 RNVEELDVSENMLVGNVPSDLGSCVKLRLLYMEGNKLWGILPSSLSKLRGIEELDLSQNNFSGKIPAYLQDFVFLRKLNLSFNDFEGVVPKKGIFGNATAVFCLGNKKLCGEYGMGNEVSTFGDVYSYGILILEIFTRKRPTDNAFNDS--ATLHNFAKM 598

HSP 8 Score: 46.2098 bits (108), Expect = 3.716e-3
Identity = 27/94 (28.72%), Postives = 49/94 (52.13%), Query Frame = 0

Query:   91 VGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIP 184
             GN+  + E+ + +N L G +P ++    +L++L +  N   G +P++L +L  +  L L  N  SG IP  + +   L   NL+ N  +G +P
Sbjct:  437 TGNLRNVEELDVSENMLVGNVPSDLGSCVKLRLLYMEGNKLWGILPSSLSKLRGIEELDLSQNNFSGKIPAYLQDFVFLRKLNLSFNDFEGVVP 530

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4GE40 (LRRNT_2 domain-containing protein {ECO:0000259|Pfam:PF08263} (Fragment))

HSP 1 Score: 218.009 bits (554), Expect = 4.150e-65
Identity = 117/252 (46.43%), Postives = 164/252 (65.08%), Query Frame = 0

Query:   24 LSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHK-RVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLK------------VLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNLGLGEEDDSNF 262
            + GN  D+ ALLA +A+I  DP  V SSWN S+HFCSW G++C ++H+ RVT ++L S+ L GSLSP +GN+SFL E++L +N     IP E+  L RL+            VL+L  N   GSIP +LG+L  L  L L SN LSG IP S++NLS+L VF++  N++QG +PS  G TLPNLQ   +S N+F GS+P+SL NA+ L+ + +QFNNF+G +  D R L  L+   ++ N+LG G + D +F
Sbjct:    1 MGGNVTDRLALLAIKAQIKQDPHNVLSSWNESIHFCSWHGVSCGRRHRQRVTRLDLQSQKLAGSLSPHIGNLSFLRELVLLNNSFSNKIPPEIGHLRRLQIPPSLGNLSFLEVLSLLDNNLVGSIPTSLGQLKNLTFLSLGSNNLSGTIPPSIYNLSALGVFSVGRNKIQGRLPSDLGKTLPNLQSFSISSNQFFGSLPLSLSNATNLRLLQMQFNNFTGQMP-DFRNLQDLEIFIIQRNHLGSGTDGDLSF 251

HSP 2 Score: 100.523 bits (249), Expect = 1.602e-21
Identity = 69/181 (38.12%), Postives = 102/181 (56.35%), Query Frame = 0

Query:   73 VTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNV-FNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            + S+++   +L G++  ++  MS L E+ +  N L G+IP  +  L +L  L L  N  EG IP++LG   +L++L L +NKLSG IP  V  L SL+V  NL+ N L GS+P   G  L +L  + +S+N  SG +P SL +   L+ + LQ N F GPI      L  + +L L  NNL
Sbjct:  310 LESLSMGGNSLTGNIPTEIQKMSSLVELDISMNALSGSIPSSLGNLTKLYELTLQGNNLEGVIPSSLGDCQQLILLDLSNNKLSGAIPQQVIGLPSLSVLLNLSMNNLTGSLPMEVGK-LKSLGVLDVSNNMLSGELPSSLGSCESLEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNL 489

HSP 3 Score: 93.5893 bits (231), Expect = 4.070e-19
Identity = 64/184 (34.78%), Postives = 99/184 (53.80%), Query Frame = 0

Query:   68 KQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRL-VILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENN 250
            ++   +  +++S  AL GS+   +GN++ L E+ L  N+L+G IP  +    +L +L+L  N   G+IP  +  L  L V+L L  N L+G +P  V  L SL V +++NN L G +PS  GS   +L+ + L  N F G IP S+     +  +DL  NN SG I       ++L+KL L  N
Sbjct:  329 QKMSSLVELDISMNALSGSIPSSLGNLTKLYELTLQGNNLEGVIPSSLGDCQQLILLDLSNNKLSGAIPQQVIGLPSLSVLLNLSMNNLTGSLPMEVGKLKSLGVLDVSNNMLSGELPSSLGSC-ESLEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNLSGEIPKFLGGFVFLKKLDLSFN 511

HSP 4 Score: 89.3521 bits (220), Expect = 1.182e-17
Identity = 60/170 (35.29%), Postives = 94/170 (55.29%), Query Frame = 0

Query:   85 GSLSPDVGNMSF-LSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQT-IDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            G+L   + N+S  L +  ++ N L G+IP E+  L  L+ L++G N+  G+IP  + +++ LV L +  N LSG IP+S+ NL+ L    L  N L+G IPS  G     L  + LS+NK SG+IP  +     L   ++L  NN +G + ++  +L  L  L + NN L
Sbjct:  273 GTLPASISNLSTKLEKFWVFRNQLHGSIPTELGNLVNLESLSMGGNSLTGNIPTEIQKMSSLVELDISMNALSGSIPSSLGNLTKLYELTLQGNNLEGVIPSSLGDC-QQLILLDLSNNKLSGAIPQQVIGLPSLSVLLNLSMNNLTGSLPMEVGKLKSLGVLDVSNNML 441

HSP 5 Score: 70.0922 bits (170), Expect = 5.038e-11
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 0

Query:   76 INLSSKALVGSLSPDVGNMSFLSEII-LYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIP 209
            ++LS+  L G++   V  +  LS ++ L  N+L G++P EV +L  L VL++  N   G +P++LG    L +L L  N   G IP+S+  L ++   +L+ N L G IP   G  +  L+K+ LS N+F G++P
Sbjct:  385 LDLSNNKLSGAIPQQVIGLPSLSVLLNLSMNNLTGSLPMEVGKLKSLGVLDVSNNMLSGELPSSLGSCESLEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNLSGEIPKFLGGFV-FLKKLDLSFNEFWGAVP 518

HSP 6 Score: 56.9954 bits (136), Expect = 1.096e-6
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 0

Query:   76 INLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGS 189
            +NLS   L GSL  +VG +  L  + + +N L G +P  +     L+VL L  N F+G IP+++  L  +  L L  N LSG IP  +     L   +L+ N+  G++P+G G+
Sbjct:  410 LNLSMNNLTGSLPMEVGKLKSLGVLDVSNNMLSGELPSSLGSCESLEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNLSGEIPKFLGGFVFLKKLDLSFNEFWGAVPTGGGA 523

HSP 7 Score: 39.2762 bits (90), Expect = 6.488e-1
Identity = 28/91 (30.77%), Postives = 43/91 (47.25%), Query Frame = 0

Query:   71 KRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPT 161
            K +  +++S+  L G L   +G+   L  + L  N  +G IP  +  L  +  L+L +N   G IP  LG    L  L L  N+  G +PT
Sbjct:  429 KSLGVLDVSNNMLSGELPSSLGSCESLEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNLSGEIPKFLGGFVFLKKLDLSFNEFWGAVPT 519

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4GLL4 ((Full=PREDICTED: probable LRR receptor {ECO:0000313|EMBL:VVA40458.1}))

HSP 1 Score: 225.328 bits (573), Expect = 4.275e-65
Identity = 121/266 (45.49%), Postives = 175/266 (65.79%), Query Frame = 0

Query:   10 LVFLALIISNSSARLSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHK-RVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLK------------VLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNLGLGEEDDSNF 262
            LV  AL + +   R+ GN  D+ ALLA +A+I  DP  V SSWN S+HFCSW G++C ++H+ RVT ++L S+ L GSLSP +GN+SFL E++L +N     IP E+  L RL+            VL+L  N   GSIP +LG+L  L  L L SN LSG IP S++NLS+L VF++ +N++QG +PS  G TLPNLQ   +++N+F GS+P+SL NA+ L+++ +QFNNF+G +  D R+L  L+  ++  N+LG G + D +F
Sbjct:   15 LVNGALFVRSMHLRMGGNVTDRLALLAIKAQIKQDPHNVLSSWNESIHFCSWHGVSCGRRHRQRVTRLDLQSQKLAGSLSPHIGNLSFLRELVLLNNSFSNKIPPEIGHLRRLQIPPSLGNLSFLEVLSLLDNNLVGSIPTSLGQLKNLTFLSLGSNNLSGTIPPSIYNLSALGVFSVGSNKIQGRLPSDLGKTLPNLQSFSIANNQFFGSLPLSLSNATSLRSLQMQFNNFTGQMP-DFRKLHNLEVFNILRNHLGSGTDADLSF 279

HSP 2 Score: 96.2857 bits (238), Expect = 7.866e-20
Identity = 67/181 (37.02%), Postives = 101/181 (55.80%), Query Frame = 0

Query:   73 VTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNV-FNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            + S+ +   +L G++  ++  MS L E+ +  N L G+IP  +  L +L  L L  N  +G IP++LG   +L++L L +NKLSG IP  V  L SL+V  NL+ N L GS+P   G  L +L  + +S+N  SG +P SL +   ++ + LQ N F GPI      L  + +L L  NNL
Sbjct:  338 LESLLMRGNSLTGNIPTEIQKMSSLVELDISMNALSGSIPSSLGNLTKLYRLFLQGNNLKGVIPSSLGDCQQLIVLDLSNNKLSGAIPQQVIGLPSLSVLLNLSMNNLTGSLPMEVGK-LKSLGVLDVSNNMLSGELPSSLGSCESIEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNL 517

HSP 3 Score: 92.4337 bits (228), Expect = 1.311e-18
Identity = 63/184 (34.24%), Postives = 98/184 (53.26%), Query Frame = 0

Query:   68 KQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRL-VILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENN 250
            ++   +  +++S  AL GS+   +GN++ L  + L  N+L+G IP  +    +L VL+L  N   G+IP  +  L  L V+L L  N L+G +P  V  L SL V +++NN L G +PS  GS   +++ + L  N F G IP S+     +  +DL  NN SG I       ++L+KL L  N
Sbjct:  357 QKMSSLVELDISMNALSGSIPSSLGNLTKLYRLFLQGNNLKGVIPSSLGDCQQLIVLDLSNNKLSGAIPQQVIGLPSLSVLLNLSMNNLTGSLPMEVGKLKSLGVLDVSNNMLSGELPSSLGSC-ESIEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNLSGEIPKFLGGFVFLKKLDLSFN 539

HSP 4 Score: 83.9593 bits (206), Expect = 1.164e-15
Identity = 60/170 (35.29%), Postives = 90/170 (52.94%), Query Frame = 0

Query:   85 GSLSPDVGNMSF-LSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQT-IDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            G+L   + N+S  L     Y N L G+IP E+  L  L+ L +  N+  G+IP  + +++ LV L +  N LSG IP+S+ NL+ L    L  N L+G IPS  G     L  + LS+NK SG+IP  +     L   ++L  NN +G + ++  +L  L  L + NN L
Sbjct:  301 GTLPTSISNLSTKLKMFWFYRNQLHGSIPTELGNLVNLESLLMRGNSLTGNIPTEIQKMSSLVELDISMNALSGSIPSSLGNLTKLYRLFLQGNNLKGVIPSSLGDC-QQLIVLDLSNNKLSGAIPQQVIGLPSLSVLLNLSMNNLTGSLPMEVGKLKSLGVLDVSNNML 469

HSP 5 Score: 70.4774 bits (171), Expect = 4.118e-11
Identity = 46/140 (32.86%), Postives = 80/140 (57.14%), Query Frame = 0

Query:   71 KRVTSINLSSKALVGSLSPDVGNMSFLSEII-LYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIP 209
            +++  ++LS+  L G++   V  +  LS ++ L  N+L G++P EV +L  L VL++  N   G +P++LG    + +L L  N   G IP+S+  L ++   +L+ N L G IP   G  +  L+K+ LS N+F G++P
Sbjct:  408 QQLIVLDLSNNKLSGAIPQQVIGLPSLSVLLNLSMNNLTGSLPMEVGKLKSLGVLDVSNNMLSGELPSSLGSCESIEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNLSGEIPKFLGGFV-FLKKLDLSFNEFWGAVP 546

HSP 6 Score: 68.9366 bits (167), Expect = 1.406e-10
Identity = 65/239 (27.20%), Postives = 103/239 (43.10%), Query Frame = 0

Query:   69 QHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDR-LFRLKVLNLGQNAFEGSIPNTLG-----------------------RLNRLVILKLFSNKLS------------------------------GVIPTSVFNLSS-LNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            Q K +T ++L S  L G++ P + N+S L    +  N +QG +P ++ + L  L+  ++  N F GS+P +L                        +L+ L +  +  N L                               G +PTS+ NLS+ L +F    NQL GSIP+  G+ L NL+ + +  N  +G+IP  +   S L  +D+  N  SG I      L  L +L L+ NNL
Sbjct:  159 QLKNLTFLSLGSNNLSGTIPPSIYNLSALGVFSVGSNKIQGRLPSDLGKTLPNLQSFSIANNQFFGSLPLSLSNATSLRSLQMQFNNFTGQMPDFRKLHNLEVFNILRNHLGSGTDADLSFVSDLTNATELKLLLVGENNFGGTLPTSISNLSTKLKMFWFYRNQLHGSIPTELGN-LVNLESLLMRGNSLTGNIPTEIQKMSSLVELDISMNALSGSIPSSLGNLTKLYRLFLQGNNL 396

HSP 7 Score: 58.151 bits (139), Expect = 4.600e-7
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 0

Query:   76 INLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDN-KFSGSI 208
            +NLS   L GSL  +VG +  L  + + +N L G +P  +     ++VL L  N F+G IP+++  L  +  L L  N LSG IP  +     L   +L+ N+  G++P+G G    N   I ++ N K  G I
Sbjct:  438 LNLSMNNLTGSLPMEVGKLKSLGVLDVSNNMLSGELPSSLGSCESIEVLYLQGNFFKGPIPSSMIGLKAIGELDLSRNNLSGEIPKFLGGFVFLKKLDLSFNEFWGAVPNG-GGAFENASAISITGNTKLCGGI 570

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L2P5D3 ((Protein kinase-like domain-containing protein {ECO:0000313|EMBL:GEU92245.1}))

HSP 1 Score: 214.542 bits (545), Expect = 1.399e-64
Identity = 120/270 (44.44%), Postives = 167/270 (61.85%), Query Frame = 0

Query:    8 SYLVFLALIISNSSARLS----GNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNV---------FNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL-GLGEEDDSNFF 263
            S+L +   I+  SSA +S    GNE D  +LL+F++ I +DP  V  SWN S HFC W+GI+C K+HKRVT++ L S+ L G+LSP VGN+SFL E+ L +N+ QG IP E+ RL RL++L L +N F G IP  L   + L  L L  NKL G IP  V  LS L+          F+L  N L GS+P   G+ LPNL+ +QL  N+ +G +P S+ N SKL+ +++ FNNFSG +++D  +L  +  + L++NN  G GE DD  F 
Sbjct:   17 SFLFYGLAIVCLSSATVSASYGGNETDYLSLLSFKSVITHDPYKVLPSWNHSFHFCEWIGISCGKRHKRVTALRLDSQGLEGTLSPHVGNLSFLHELHLRNNNFQGTIPHELGRLSRLRILYLHRNKFSGVIPANLSDCSNLEELHLGRNKLVGSIPKEVSLLSKLSDLVIEYXLVNFSLPGNHLSGSLPLEVGNQLPNLKWLQLRTNELTGVLPPSISNCSKLEFLEMSFNNFSGKLAIDFSKLRDIYSIKLQDNNFHGRGEADDMKFI 286

HSP 2 Score: 73.559 bits (179), Expect = 3.029e-12
Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 0

Query:   72 RVTSINLSSKALVGSLSPDVGNMS-FLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIP 209
            ++  + LS   L+G L   +GN+S  LS + L  N L G++P  +  L  L +L+L  N F+G IP T+G+L +L +L L SN+ SG I  ++ NLS L    L +N+L+G IPS  G     L  + L DN+ SG+IP
Sbjct:  294 KLGELVLSKCNLIGVLPISIGNLSDQLSILSLGKNQLFGSLPSSIGSLVGLTILDLRHNRFKGKIPTTIGKLLKLQVLVLSSNQFSGPILNAIGNLSLLTKLYLESNKLEGLIPSSLGKC-KELTILSLPDNRLSGNIP 431

HSP 3 Score: 68.1662 bits (165), Expect = 1.939e-10
Identity = 66/204 (32.35%), Postives = 95/204 (46.57%), Query Frame = 0

Query:   57 HFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEG-------SIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSS-LNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            H    + +    Q   +  + L +  L G L P + N S L  + +  N+  G +  +  +L  +  + L  N F G          ++L    +L  L L    L GV+P S+ NLS  L++ +L  NQL GS+PS  GS L  L  + L  N+F G IP ++    KLQ + L  N FSGPI      L  L KL LE+N L
Sbjct:  200 HLSGSLPLEVGNQLPNLKWLQLRTNELTGVLPPSISNCSKLEFLEMSFNNFSGKLAIDFSKLRDIYSIKLQDNNFHGRGEADDMKFIHSLRNCTKLGELVLSKCNLIGVLPISIGNLSDQLSILSLGKNQLFGSLPSSIGS-LVGLTILDLRHNRFKGKIPTTIGKLLKLQVLVLSSNQFSGPILNAIGNLSLLTKLYLESNKL 402

HSP 4 Score: 62.003 bits (149), Expect = 2.302e-8
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 0

Query:   59 CSWVG---ITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIP 184
            C+ +G   I+      +++ ++L    L GSL   +G++  L+ + L  N  +G IP  + +L +L+VL L  N F G I N +G L+ L  L L SNKL G+IP+S+     L + +L +N+L G+IP
Sbjct:  303 CNLIGVLPISIGNLSDQLSILSLGKNQLFGSLPSSIGSLVGLTILDLRHNRFKGKIPTTIGKLLKLQVLVLSSNQFSGPILNAIGNLSLLTKLYLESNKLEGLIPSSLGKCKELTILSLPDNRLSGNIP 431

HSP 5 Score: 51.9878 bits (123), Expect = 4.654e-5
Identity = 52/201 (25.87%), Postives = 85/201 (42.29%), Query Frame = 0

Query:   73 VTSINLSSKALVGSLSPDVGNMSFLSEII---------LYDNHLQGAIPQEV-DRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPT-------------------------------SVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPI 232
            +  ++L    LVGS+  +V  +S LS+++         L  NHL G++P EV ++L  LK L L  N   G +P ++   ++L  L++  N  SG +                                 S+ N + L    L+   L G +P   G+    L  + L  N+  GS+P S+ +   L  +DL+ N F G I
Sbjct:  158 LEELHLGRNKLVGSIPKEVSLLSKLSDLVIEYXLVNFSLPGNHLSGSLPLEVGNQLPNLKWLQLRTNELTGVLPPSISNCSKLEFLEMSFNNFSGKLAIDFSKLRDIYSIKLQDNNFHGRGEADDMKFIHSLRNCTKLGELVLSKCNLIGVLPISIGNLSDQLSILSLGKNQLFGSLPSSIGSLVGLTILDLRHNRFKGKI 358

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D901 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 214.157 bits (544), Expect = 8.178e-61
Identity = 123/317 (38.80%), Postives = 170/317 (53.63%), Query Frame = 0

Query:   18 SNSSARLSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGR------------------------LNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPS------------------------------------------------GFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNLGLGEEDDSNF 262
            + +S+   GNE D+ ALLAF++KI +DP GV SSWN SLHFC W G+ C  +H+RVT I+L SK LVGSLSP VGN++FL  + LY+N  QG IP E+  LFRL++LNL  N FEG IP +L R                        L +L IL +  N L+G I   + NL+SL  FN   N  +GSIP                                                  FG   P+LQ +QL+DN+F+G++P+S+ N SK++   +++NNF+G I+++  RL  L+ ++L +NN G GE DD  F
Sbjct:   39 TTASSTFVGNETDRFALLAFKSKILHDPHGVVSSWNNSLHFCEWQGVICGHRHRRVTVIDLKSKGLVGSLSPYVGNLTFLRRLWLYNNTFQGEIPVELGNLFRLQILNLSNNNFEGEIPASLSRCSNLTHLGVGKNKLVGKFPKELTSLPKLTILAIQVNNLTGGISPFIGNLTSLKSFNAGGNSFRGSIPDTLGQLKKLAQLGLGRNQLSGMIPPSIYNLSFLNVFSVAFNQLHGSLPPSFGFMFPDLQLLQLNDNQFTGTLPLSISNFSKIEHFQVEYNNFNGKITINFGRLQNLKDIALSDNNFGSGEPDDLAF 355

HSP 2 Score: 101.293 bits (251), Expect = 1.429e-21
Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 0

Query:   72 RVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVI-LKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSL 247
            ++  +N     L G +   +GN+S L E+ L  N L+G IP  +    RL  L+L QN   G+IP  L +++ L I L L  N+LSG +PT V NL +L   +++ N+L G IPS  GS   +L+ + + +N F GSIP+S  +   +Q  DL  NN SG I        +L+K SL
Sbjct:  437 KMQVLNFEMNHLSGKIPNSIGNLSLLIELSLGSNRLEGTIPSRLANCKRLLFLDLHQNNLSGNIPKELLKVSSLSISLNLAWNRLSGSLPTEVGNLKNLMALDISENRLSGEIPSSLGSC-TSLENLYMQENSFQGSIPLSFESLRGIQNFDLSHNNLSGKIPT------FLEKFSL 606

HSP 3 Score: 94.7449 bits (234), Expect = 2.331e-19
Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 0

Query:   78 LSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFN------------------------LSSLNV-FNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            L    + G++   +GN+  L  + +  N   G IP  +  L +++VLN   N   G IPN++G L+ L+ L L SN+L G IP+ + N                        +SSL++  NLA N+L GS+P+  G+ L NL  + +S+N+ SG IP SL + + L+ + +Q N+F G I +    L  +Q   L +NNL
Sbjct:  395 LGRNQIYGTIPSTIGNLVNLDVLGMEGNQFTGTIPTNIGNLPKMQVLNFEMNHLSGKIPNSIGNLSLLIELSLGSNRLEGTIPSRLANCKRLLFLDLHQNNLSGNIPKELLKVSSLSISLNLAWNRLSGSLPTEVGN-LKNLMALDISENRLSGEIPSSLGSCTSLENLYMQENSFQGSIPLSFESLRGIQNFDLSHNNL 593

HSP 4 Score: 66.6254 bits (161), Expect = 7.238e-10
Identity = 57/215 (26.51%), Postives = 93/215 (43.26%), Query Frame = 0

Query:   69 QHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLF-RLKVLNLGQNAFEGSIPNTL------------------------GRLNRLVILKLFSNKLSGVIPT------SVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            Q K++  + L    L G + P + N+SFL+   +  N L G++P     +F  L++L L  N F G++P ++                        GRL  L  + L  N      P       S+ N S+L    +  NQ +G +P   G+   NL    L  N+  G+IP ++ N   L  + ++ N F+G I  +   L  +Q L+ E N+L
Sbjct:  234 QLKKLAQLGLGRNQLSGMIPPSIYNLSFLNVFSVAFNQLHGSLPPSFGFMFPDLQLLQLNDNQFTGTLPLSISNFSKIEHFQVEYNNFNGKITINFGRLQNLKDIALSDNNFGSGEPDDLAFIGSLANCSNLEALGMEVNQFRGVLPESVGNLSKNLFAFILGRNQIYGTIPSTIGNLVNLDVLGMEGNQFTGTIPTNIGNLPKMQVLNFEMNHL 448

HSP 5 Score: 63.1586 bits (152), Expect = 1.251e-8
Identity = 50/154 (32.47%), Postives = 78/154 (50.65%), Query Frame = 0

Query:   71 KRVTSINLSSKALVGSLSPDVGNMSFLS-EIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMS--LYNASKLQTI 221
            KR+  ++L    L G++  ++  +S LS  + L  N L G++P EV  L  L  L++ +N   G IP++LG    L  L +  N   G IP S  +L  +  F+L++N L G IP+       +L  + LS N F G +PM     NAS +  +
Sbjct:  484 KRLLFLDLHQNNLSGNIPKELLKVSSLSISLNLAWNRLSGSLPTEVGNLKNLMALDISENRLSGEIPSSLGSCTSLENLYMQENSFQGSIPLSFESLRGIQNFDLSHNNLSGKIPTFLEKF--SLMILNLSFNDFEGELPMEGVFANASAISIV 635

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5PXS4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 212.231 bits (539), Expect = 8.713e-61
Identity = 130/291 (44.67%), Postives = 165/291 (56.70%), Query Frame = 0

Query:   13 LALIISNSSARLSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAF--------------------------------------EGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSG---PISVDCRRLLYLQKLSLENNNLGLGEEDDSNF 262
            + L++S S     GNE D+ +LLAF+A+I  DPLG  SSWN S HFC W G+TC ++H+RV  ++L S  LVGSLSP  GN+SFL  + L DN L   IPQE+ RLFRL+ L L  N F                                      EGS+PN LG+L RL IL L +N LSG+IP S+FNLSSL + +   NQL GS+P   G TLPNLQ   +  N+F G IP +  NAS L +  +  NNF+G   P+S        LQ LS+ NN+LG GE +D NF
Sbjct:   10 IYLLVSFSFPVYGGNETDRLSLLAFKAQITGDPLGKLSSWNESSHFCQWSGVTCGRRHQRVVELDLHSYQLVGSLSPHTGNLSFLRILNLADNSLSLYIPQELGRLFRLEELVLRNNTFDGGIPVLTFELNKFVGEIPYSFGNLSAMKAIYGSINNLEGSVPNVLGQLKRLNILSLGANNLSGMIPPSIFNLSSLTLLSFPVNQLYGSLPHTLGLTLPNLQVFNIHTNQFGGLIPATFSNASNLLSFQIGNNNFNGKVPPLSSSHD----LQVLSVGNNSLGKGENNDLNF 296

HSP 2 Score: 91.6633 bits (226), Expect = 2.556e-18
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = 0

Query:   73 VTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVF-NLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            + ++ L +  L G +   +G +  LS++ L  N + G IP  +  +  L  +N+  N  EGSIP +LG   +L+ L L  N LSG IP  + ++ SL+++  L+ N+L GS+P      L NL  + +S N+ SG IP SL +   L+++ L+ N   GPI      L  +Q+L+L  NNL
Sbjct:  356 LVALGLETNQLTGMIPSSMGKLQKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGSIPPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEM-EKLVNLGYLDVSKNRLSGEIPESLGSCVSLESLHLEENFLQGPIPNTLSSLRAIQELNLSCNNL 535

HSP 3 Score: 82.0333 bits (201), Expect = 5.636e-15
Identity = 55/170 (32.35%), Postives = 87/170 (51.18%), Query Frame = 0

Query:  105 NHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGS-----------------------TLPNLQK-IQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENN 250
            N ++G+IP E+  L  L  L L  N   G IP+++G+L +L  L L  NK+SG+IP+S+ N++SL   N+  N L+GSIP   G+                       ++P+L   + LS+N+ +GS+P+ +     L  +D+  N  SG I       + L+ L LE N
Sbjct:  340 NQIRGSIPAEIGNLVNLVALGLETNQLTGMIPSSMGKLQKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGSIPPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNLGYLDVSKNRLSGEIPESLGSCVSLESLHLEEN 509

HSP 4 Score: 74.3294 bits (181), Expect = 1.753e-12
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 0

Query:   71 KRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRL-VILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPI 232
            ++++ + L+   + G +   +GNM+ L  + +  N+L+G+IP  +    +L  L L QN   G IP  L  +  L + L L  N+L+G +P  +  L +L   +++ N+L G IP   GS + +L+ + L +N   G IP +L +   +Q ++L  NN +G I
Sbjct:  378 QKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGSIPPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNLGYLDVSKNRLSGEIPESLGSCV-SLESLHLEENFLQGPIPNTLSSLRAIQELNLSCNNLTGQI 539

HSP 5 Score: 59.3066 bits (142), Expect = 1.870e-7
Identity = 38/115 (33.04%), Postives = 65/115 (56.52%), Query Frame = 0

Query:   71 KRVTSINLSSKALVGSLSPDVGNMSFLS-EIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIP 184
            +++ S+ LS   L G +  ++ ++  LS  ++L +N L G++P E+++L  L  L++ +N   G IP +LG    L  L L  N L G IP ++ +L ++   NL+ N L G IP
Sbjct:  426 QKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNLGYLDVSKNRLSGEIPESLGSCVSLESLHLEENFLQGPIPNTLSSLRAIQELNLSCNNLTGQIP 540

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LKD2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 209.92 bits (533), Expect = 3.368e-60
Identity = 120/289 (41.52%), Postives = 169/289 (58.48%), Query Frame = 0

Query:   18 SNSSARLSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEG------------------------SIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGS-------------------TLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNLGLGEEDDSNFF 263
            + +++ + GNE D QALLAF++KI  DP  +FSSWN S HFC W G+TC ++H+RVT ++L S+ LVGSLSP +GN+SFL +I+L +N +   IP EV RL+RL+VL L  N+F+G                        SIP  L  L+ L  L   +N L G IP  + NLSSL + + A+N L G IP   G                    TLP LQ  Q+  N+F+GS+P+SL NAS+L+   ++ NNF+G +SV+   L  L+KL ++ NNL  G+ D+ +FF
Sbjct:   48 TGTTSSVGGNETDHQALLAFKSKITLDPRNIFSSWNDSNHFCQWEGVTCGRKHRRVTILDLRSRDLVGSLSPYIGNLSFLRQIVLANNTIGDKIPDEVGRLYRLRVLMLYNNSFDGEIPANLSHCSNLNFISVARNNLSGSIPKQLASLSMLKSLSFDTNNLMGGIPPFIGNLSSLQLISAADNVLGGHIPDALGQLQSLKYLGLGGNKLSDLFLTLPRLQWFQIDRNQFTGSLPVSLSNASELELFLIEENNFTGKVSVNFGGLQRLEKLIVDRNNLRSGDADEMDFF 336

HSP 2 Score: 53.9138 bits (128), Expect = 1.243e-5
Identity = 44/166 (26.51%), Postives = 70/166 (42.17%), Query Frame = 0

Query:   73 VTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFG-----------------------------STLPNLQKIQLSDNKFSGSIP 209
            + S++  +  L+G + P +GN+S L  I   DN L G IP  + +L  LK L LG N     + +    L RL   ++  N+ +G +P S+ N S L +F +  N   G +   FG                             +   NLQ + +  N+F G +P
Sbjct:  199 LKSLSFDTNNLMGGIPPFIGNLSSLQLISAADNVLGGHIPDALGQLQSLKYLGLGGN----KLSDLFLTLPRLQWFQIDRNQFTGSLPVSLSNASELELFLIEENNFTGKVSVNFGGLQRLEKLIVDRNNLRSGDADEMDFFQSLANCSNLQILDIRANQFKGEVP 360

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VNC4 (LRRNT_2 domain-containing protein {ECO:0000259|Pfam:PF08263})

HSP 1 Score: 198.364 bits (503), Expect = 5.721e-60
Identity = 108/272 (39.71%), Postives = 153/272 (56.25%), Query Frame = 0

Query:   12 FLALIISNSSARLSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLN------------------------------LGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNLG 253
            F A+ +S S+A+   NE D+ ALL F+ +I++DP GV +SWN S + C W G+TCS +H+RV ++ L  + L G++SP VGN+SF+  I L +N   G IPQE  RLFRL+VLN                              LG N  EG++P+ +G L +  IL    NKLSG+IP S+FN S++   ++  N   G++P+  G TLPNL+ + L  NKF G+ P S+ NAS L+ +DL  N F G I  +   L  L    L +N  G
Sbjct:   22 FPAIHVSLSAAKQFQNETDRLALLEFKHQIYDDPFGVLNSWNHSQYHCQWEGVTCSTRHQRVVALTLMDRQLSGTISPHVGNLSFMRFIQLGENQFHGEIPQEFGRLFRLRVLNLLKIFIFHTNNLTGEIPSSIGNLSSLTTLALGYNNLEGNLPSEMGLLKKFAILTAGGNKLSGIIPASIFNCSAIIAISVPANSFHGNLPTNIGLTLPNLEGLYLGANKFYGNFPTSITNASGLEVLDLSRNKFEGQIPANLGDLTNLIVFDLYDNLFG 293

[Close]

BLAST of XM_017367010.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1LCY8 ((Protein kinase-like domain-containing protein {ECO:0000313|EMBL:PWA46872.1}))

HSP 1 Score: 211.075 bits (536), Expect = 6.318e-60
Identity = 127/302 (42.05%), Postives = 163/302 (53.97%), Query Frame = 0

Query:   10 LVFLALIISNSSARLSGNERDQQALLAFRAKIFNDPLGVFSSWNMSLHFCSWVGITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPT------------------------------------------------SVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL-GLGEEDDSNF 262
            L    LI +  SA   GNE D  ALL+F++ I  DP  V ++WN S HFC W GI+C K+HKRVT++ L S+ L GSLSP VGN+SFL  + L +N  QGAIP E+ RL RL+ L L  N F G IP+ L   + L  L L  NKL+G IPT                                                S+FNLS L  F+L  NQL GS+PS FG  LPNL+ +QLSDNK +G +P SL N SKL  +++  NNF+G +++D  +L  +   +L  NN  G GE DD  F
Sbjct:   23 LAITCLISATVSASYGGNETDYLALLSFKSMITQDPYKVLTTWNHSFHFCEWSGISCGKRHKRVTAVRLISQGLEGSLSPHVGNLSFLHALYLRNNSFQGAIPHELGRLSRLRHLYLNGNKFSGVIPSNLSGCSNLEELVLARNKLTGGIPTFLGNLTSMEVFSAALNQLGGSIPDIFGLWKSLTLFYCGECSLYGSIPHSIFNLSLLVEFSLYENQLTGSLPSEFGVMLPNLEWLQLSDNKLTGVLPPSLSNCSKLGFLEMANNNFTGKLTIDFSKLRDIYVFNLATNNFHGRGEADDMRF 324

HSP 2 Score: 104.76 bits (260), Expect = 8.820e-23
Identity = 71/201 (35.32%), Postives = 111/201 (55.22%), Query Frame = 0

Query:   54 MSLHFCSWVG---ITCSKQHKRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQK-IQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENN 250
            + L+ C+ +G   I+      ++  ++LS   L G+L   + ++  L+ + L  N  +G IP  + +L +L+ L L  N F G IP+ +G L+ L+ L LFSNKL G IP+S+ N   LN  +L+ N+L G+IP      LP+L   + LS+N  SGSIP  + +   L  +DL +N FSGPI+      + L +L L  N
Sbjct:  337 LVLYNCNLIGVLPISIGNLSNQLRILSLSDNQLYGNLPSSISSLIGLTTLRLEFNRFKGKIPTTIGKLQKLQDLELYDNQFSGPIPDAIGNLSLLIKLYLFSNKLEGHIPSSLGNCEKLNGLDLSFNRLSGNIPKQL-LQLPSLTYFLDLSNNNLSGSIPSEIQDLKMLSGLDLSYNKFSGPITSSLGECISLTELYLSGN 536

HSP 3 Score: 89.7373 bits (221), Expect = 1.289e-17
Identity = 69/181 (38.12%), Postives = 89/181 (49.17%), Query Frame = 0

Query:   73 VTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVF-NLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            +T++ L      G +   +G +  L ++ LYDN   G IP  +  L  L  L L  N  EG IP++LG   +L  L L  N+LSG IP  +  L SL  F +L+NN L GSIPS     L  L  + LS NKFSG I  SL     L  + L  N F G I      L  L+ L +  NNL
Sbjct:  383 LTTLRLEFNRFKGKIPTTIGKLQKLQDLELYDNQFSGPIPDAIGNLSLLIKLYLFSNKLEGHIPSSLGNCEKLNGLDLSFNRLSGNIPKQLLQLPSLTYFLDLSNNNLSGSIPSEI-QDLKMLSGLDLSYNKFSGPITSSLGECISLTELYLSGNIFEGIIPSSFSSLRGLEVLDVSQNNL 562

HSP 4 Score: 81.6481 bits (200), Expect = 6.081e-15
Identity = 64/185 (34.59%), Postives = 96/185 (51.89%), Query Frame = 0

Query:   76 INLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGS-------IPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSS-LNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENNNL 252
            + LS   L G L P + N S L  + + +N+  G +  +  +L  + V NL  N F G          ++L     L  L L++  L GV+P S+ NLS+ L + +L++NQL G++PS   S+L  L  ++L  N+F G IP ++    KLQ ++L  N FSGPI      L  L KL L +N L
Sbjct:  258 LQLSDNKLTGVLPPSLSNCSKLGFLEMANNNFTGKLTIDFSKLRDIYVFNLATNNFHGRGEADDMRFIDSLKNCTNLEELVLYNCNLIGVLPISIGNLSNQLRILSLSDNQLYGNLPSSI-SSLIGLTTLRLEFNRFKGKIPTTIGKLQKLQDLELYDNQFSGPIPDAIGNLSLLIKLYLFSNKL 441

HSP 5 Score: 75.0998 bits (183), Expect = 1.048e-12
Identity = 59/212 (27.83%), Postives = 92/212 (43.40%), Query Frame = 0

Query:   71 KRVTSINLSSKALVGSLSPDVGNMSFLSEIILYDNHLQGAIPQEVDRLF-RLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGS-------------------------------IPSGFGSTLPNLQKIQLSDNKFSGSIPMSLYNASKLQTIDLQFNNFSGPISVDCRRLLYLQKLSLENN 250
            K +T       +L GS+   + N+S L E  LY+N L G++P E   +   L+ L L  N   G +P +L   ++L  L++ +N  +G +      L  + VFNLA N   G                                +P   G+    L+ + LSDN+  G++P S+ +   L T+ L+FN F G I     +L  LQ L L +N
Sbjct:  204 KSLTLFYCGECSLYGSIPHSIFNLSLLVEFSLYENQLTGSLPSEFGVMLPNLEWLQLSDNKLTGVLPPSLSNCSKLGFLEMANNNFTGKLTIDFSKLRDIYVFNLATNNFHGRGEADDMRFIDSLKNCTNLEELVLYNCNLIGVLPISIGNLSNQLRILSLSDNQLYGNLPSSISSLIGLTTLRLEFNRFKGKIPTTIGKLQKLQDLELYDN 415

HSP 6 Score: 66.2402 bits (160), Expect = 1.013e-9
Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = 0

Query:   71 KRVTSINLSSKALVGSLSPDVGNMSFLSEII-LYDNHLQGAIPQEVDRLFRLKVLNLGQNAFEGSIPNTLGRLNRLVILKLFSNKLSGVIPTSVFNLSSLNVFNLANNQLQGSIPSGFGSTLPNLQKIQLSDNKFSGSIPM 210
            +++  ++LS   L G++   +  +  L+  + L +N+L G+IP E+  L  L  L+L  N F G I ++LG    L  L L  N   G+IP+S  +L  L V +++ N L G IP  F     +L+ + LS N F G +P+
Sbjct:  453 EKLNGLDLSFNRLSGNIPKQLLQLPSLTYFLDLSNNNLSGSIPSEIQDLKMLSGLDLSYNKFSGPITSSLGECISLTELYLSGNIFEGIIPSSFSSLRGLEVLDVSQNNLSGKIPQFFDKRF-SLEFLNLSINDFEGEVPV 592


Match Name	Stats	Description
A0A7N2RCC8	E-Value: 1.065e-66, PID: 43.61	Protein kinase domain-containing protein {ECO:0000... [more]
A0A7J0DZ98	E-Value: 8.081e-66, PID: 46.97	(Ras-related small GTP-binding family protein {ECO... [more]
A0A5E4GE40	E-Value: 4.150e-65, PID: 46.43	LRRNT_2 domain-containing protein {ECO:0000259\|Pfa... [more]
A0A5E4GLL4	E-Value: 4.275e-65, PID: 45.49	(Full=PREDICTED: probable LRR receptor {ECO:000031... [more]
A0A6L2P5D3	E-Value: 1.399e-64, PID: 44.44	(Protein kinase-like domain-containing protein {EC... [more]
A0A4S4D901	E-Value: 8.178e-61, PID: 38.80	Protein kinase domain-containing protein {ECO:0000... [more]
A0A4U5PXS4	E-Value: 8.713e-61, PID: 44.67	Protein kinase domain-containing protein {ECO:0000... [more]
A0A7N2LKD2	E-Value: 3.368e-60, PID: 41.52	Protein kinase domain-containing protein {ECO:0000... [more]
A0A068VNC4	E-Value: 5.721e-60, PID: 39.71	LRRNT_2 domain-containing protein {ECO:0000259\|Pfa... [more]
A0A2U1LCY8	E-Value: 6.318e-60, PID: 42.05	(Protein kinase-like domain-containing protein {EC... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.