XM_017366990.1

Resource Type: 
Polypeptide
Name: 
XM_017366990.1
Identifier: 
XM_017366990.1-protein
Sequence: 
MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPFNLHELSRYDAAMA
MDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVFEDNTGGTETYT
TGSFQDAVLVAQINSRSLPWNRLEVPEVPSRNLVERNSGGADRNVAATRQ
SMDPSPQMAPNSVTVSYTRQLRDPSPQMAPNLATVSYMDLHKATNGFSSA
NLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGA
VKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLE
MWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHC
DLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAP
EYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLP
DDVIKITDPLMKVMTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDM
RDVLYELESIRNIF
Sequence Length: 
514
Sequence Checksum: 
ecda5d18f7274c514d7118eb182ca45d
View location in JBrowse: 
DCARv2_Chr8:21989960..21993818+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017366990.1, derives from mRNA, XM_017366990.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6QV76 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 335.109 bits (858), Expect = 5.304e-107
Identity = 168/338 (49.70%), Postives = 228/338 (67.46%), Query Frame = 0
 
Query:  185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLC---SSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLMKVMTSANKGDDK--------RVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIR 511
            VSY  L KAT+GFSSANL+G G FGSVYKG   ++ V                +A+KVFN+  RGA KSF +EY+ L +I H  LVK++T C+S+D  G+DF+A+++EFMD GSL  WLHP+   N      P++L+L  R+ I ID+A ALDYLHNQC+  I+HCDLKP N+L+DK + A ++DFGLA  L E P+ N+    SSS GIRG+ GY APEYG+G +++T GD YSFGILLLEM TGK+PT+ MF  GLNLHN+V  +LP+ V +I++ L+    +AN  + +        ++E+CLT ++ IG+ACS  S+ +R D+ D   EL SIR
Sbjct:  184 VSYATLLKATDGFSSANLIGLGAFGSVYKGILAEDSV---------------TVAVKVFNMLHRGASKSFISEYEALRNIRHRNLVKILTACSSIDFSGNDFKALVYEFMDGGSLAEWLHPS-SGNEEVTEAPKLLSLVQRLDIAIDVASALDYLHNQCETPIVHCDLKPSNVLLDKELTAHVSDFGLARFLSE-PTNNVSINQSSSIGIRGSVGYAAPEYGMGSEVSTYGDVYSFGILLLEMFTGKRPTDHMFSDGLNLHNYVKTTLPERVSQISESLVLQEGTANVTEARSQLSVTAQKIEECLTLIFGIGIACSAESSTNRKDISDAATELHSIR 504

HSP 2 Score: 52.373 bits (124), Expect = 1.417e-4
Identity = 30/96 (31.25%), Postives = 44/96 (45.83%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPFNLHELS----------RYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVR 86
            M TGK+ TD MF     L N+V   L +RV  + +   L E +             A    +CL ++  IG+ C+ ES   R DI D  + L ++R
Sbjct:  409 MFTGKRPTDHMFSDGLNLHNYVKTTLPERVSQISESLVLQEGTANVTEARSQLSVTAQKIEECLTLIFGIGIACSAESSTNRKDISDAATELHSIR 504
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4ELQ3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 333.954 bits (855), Expect = 3.584e-106
Identity = 170/353 (48.16%), Postives = 232/353 (65.72%), Query Frame = 0
 
Query:  169 RQLRDPSPQMAPNLATVSYMDLHKATNGFSSANLVGAGGFGSVYKGTF--DQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLM-------KVMTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRN 512
            R  +   P +  +   VSY  L KAT+GFSSANL+G G FGSVY+G    D+E+V                 AIKV NLQ RGA+KSF  E +TL +I H  LV++IT+C+SVD  G++F+A+++EFM  GSLE WL+ + ++N  G  + + L L  RI+I ID+A ALDYLH+QC+  IIHCDLKP NIL+D+ M A I DFGLA   PE  + N  SSS G+RGT GY+APEYGLGC+++T GD YS+GILLLEM+TGK+PT  MF  G NLHNF  ++LPD V++I DP++          T+    +  ++ +CL  M +IG+ACS  S + R  + ++L+EL  ++N
Sbjct:  158 RTAQSTVPVLKESFLKVSYEKLLKATDGFSSANLIGFGSFGSVYRGILVQDREFVA----------------AIKVLNLQNRGAIKSFMAECETLRNIRHRNLVRIITSCSSVDFHGNEFKALVYEFMPNGSLERWLNASLETND-GQNEQQRLNLLQRINIAIDVACALDYLHHQCQKPIIHCDLKPSNILLDREMVAHIGDFGLARFFPELTNPNQ-SSSIGVRGTIGYVAPEYGLGCEISTYGDVYSYGILLLEMITGKRPTENMFEEGHNLHNFARMALPDRVMEIADPVLLDNEEEEARATTIQVNNGSKIVECLISMVNIGVACSTESPQGRMSISNILHELHLVKN 492

HSP 2 Score: 62.7734 bits (151), Expect = 8.541e-8
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF---NLHELSRY------DAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVR 86
            M+TGK+ T+ MF+  + L NF   AL DRV+++ DP    N  E +R       + +  ++CL  +++IGV C+ ESPQ R  I + L  L  V+
Sbjct:  397 MITGKRPTENMFEEGHNLHNFARMALPDRVMEIADPVLLDNEEEEARATTIQVNNGSKIVECLISMVNIGVACSTESPQGRMSISNILHELHLVK 491
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4SLI2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 332.798 bits (852), Expect = 1.266e-104
Identity = 173/357 (48.46%), Postives = 232/357 (64.99%), Query Frame = 0
 
Query:  168 TRQLRDPS-PQMAPNLATVSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLM-----KVMTSANKGDDK----RVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
            +R  R PS P +   L  +SY  L KAT+GFSS NL+G G FGSVYKG FD++               G  +AIKV NLQR+GA KSF  E + L +I H  LV++IT+C+SVD  G+DF+AI++++M  GSLE WLHP         I+ + LTL  RISI ID+A ALDYLH  C+  I+HCDLKP NIL+D ++ A I DFGL+    +  S    SSS G+RGT GY+APEYGLG +++T GD YS+GILLLEM+T KKPT+ MF GGLNLHNF  ++LPD V+ I DP++      ++ + N G  +       +CL  M  IG+ACS  S +DR ++ +V++E +S++NI 
Sbjct:  275 SRPSRQPSEPMIRKALLKMSYKSLLKATDGFSSTNLIGVGSFGSVYKGVFDED---------------GTVVAIKVINLQRQGASKSFMAECKALKNIRHKNLVRVITSCSSVDFQGNDFKAIVYKYMPNGSLEKWLHPDAIPQRDREIEIQKLTLLQRISIAIDVASALDYLHQHCQEPILHCDLKPSNILLDNDLSAHIGDFGLS-RFYQAVSNPTVSSSIGVRGTIGYVAPEYGLGSEVSTNGDVYSYGILLLEMVTTKKPTDVMFEGGLNLHNFARMALPDHVMDIVDPILLNDDEVLVGTDNHGRSQTRTNSTLECLISMLRIGVACSMESPQDRMNITNVVHEFQSVKNIL 615

HSP 2 Score: 63.5438 bits (153), Expect = 5.106e-8
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPFNL-----------HELSRYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVF 89
            M+T KK TD MF+    L NF   AL D V+D++DP  L           H  S+      ++CL  +L IGV C++ESPQ R +I + +   ++V+ + 
Sbjct:  516 MVTTKKPTDVMFEGGLNLHNFARMALPDHVMDIVDPILLNDDEVLVGTDNHGRSQTRTNSTLECLISMLRIGVACSMESPQDRMNITNVVHEFQSVKNIL 615
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540NMQ1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 315.849 bits (808), Expect = 1.545e-101
Identity = 166/340 (48.82%), Postives = 217/340 (63.82%), Query Frame = 0
 
Query:  185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPS----MNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITD-PLMKVMTSAN----KGDDKRVEDCLTRMYSIGLACSKTSAKDR-PDMRDVLYELESIRNIF 514
            VSY  L KAT+GFS ANL+GAG FGSVYKG  D             ED+    +A+KVFNL R GA +SF  E + L +I H  LVK+IT C+SVD  G+DF+A+++EF D GSLE WLHP   +       P+ L+L  R+ I I +A ALDYLHN C+  I+HCDLKP N+L+D  M + ++DFGLA  L +  S    +   +SS GIRGT GY APEYG+G +++T GD YSFGILLLEM T K+PT+ MF   LNLHNFV +++P  V +I D P ++  T+ N         +VE CL+ ++ IG+ACS  S +DR  ++ D   EL SIRN F
Sbjct:   30 VSYATLLKATDGFSEANLIGAGSFGSVYKGVLD-------------EDDKAQLVAVKVFNLLRHGASRSFIAECEALRNIRHRNLVKIITVCSSVDFHGNDFKALVYEFKDNGSLEEWLHPPTGTEVLRDYVPKKLSLLQRLEIAIGVACALDYLHNHCETPIVHCDLKPSNVLLDNEMTSHVSDFGLARFLSQVTSNVSAIQSQTSSVGIRGTVGYAAPEYGMGSEVSTNGDVYSFGILLLEMFTRKRPTDNMFGDSLNLHNFVKMAIPGRVTEIADAPFLQGGTNENPNQCSARIHKVEVCLSSIFRIGIACSADSVRDRLKNINDAASELHSIRNTF 356
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AYN8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 330.487 bits (846), Expect = 1.551e-101
Identity = 171/353 (48.44%), Postives = 225/353 (63.74%), Query Frame = 0
 
Query:  185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEY--PSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLMKV---------------------MTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
            VSY  L KAT+GFS  NL+G G FGSVYKG    E +                +A+KV NLQR GA KSF  E + L +I H  LVK+ITTC+S+D  G+DF+A+++EFM  GSLE WLH + +S++ G  +P+ L L+ RI++ ID+A ALDYLHN C+  IIHCDLKP N+L+D +M A + DFGLA  LPE   PS    SSS GIRGT GY APE G+G +++TKGD YS+GILLLEM+TGK+PT+ MF G LNLHNF S++ PD V++I DP++ +                      +     +D R E+CL  M  IGLACS  S  DR D+ + ++EL  +R+I 
Sbjct:  503 VSYERLLKATDGFSLENLIGMGSFGSVYKGILQDEVI----------------VAVKVLNLQRGGASKSFMAECEALRNIRHRNLVKIITTCSSIDFQGNDFKALVYEFMPNGSLERWLHSSSESDN-GQDEPQTLNLHQRINVAIDVASALDYLHNHCEKTIIHCDLKPSNVLLDSDMVAHVGDFGLARYLPELSNPSQ---SSSLGIRGTIGYAAPECGMGSEVSTKGDVYSYGILLLEMMTGKRPTDNMFEGSLNLHNFASMAFPDRVMEILDPVLTINDEATAAAAAAAAAVAKSNNNRSPGQARNDNRKEECLISMVKIGLACSMESPLDRMDISNAIHELLLVRDIL 835

HSP 2 Score: 54.299 bits (129), Expect = 5.010e-5
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF-----------------------NLHELSRYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVFEDNTGGTET 98
            M+TGK+ TD MF+ S  L NF S A  DRV++++DP                        N       +     +CL  ++ IG+ C++ESP  R DI + +  L  VR + +    GT T
Sbjct:  724 MMTGKRPTDNMFEGSLNLHNFASMAFPDRVMEILDPVLTINDEATAAAAAAAAAVAKSNNNRSPGQARNDNRKEECLISMVKIGLACSMESPLDRMDISNAIHELLLVRDILQ----GTRT 840
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MSV5 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 328.561 bits (841), Expect = 1.790e-101
Identity = 198/446 (44.39%), Postives = 272/446 (60.99%), Query Frame = 0
 
Query:   73 PDIKDTLSILETVRRVFEDNTGGTETYTTGSFQDAVLVAQINSRSL--PWNRLEVPEVPSRNLVERNSGGADRNVAATRQSMDPSPQMAPNSVTVSYTRQLRDPSPQ--MAPNLATVSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLMKVMTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
            P+  + LS L+ +   F D  G  E  T G F ++  ++ I +  L    + L+ P   ++   +     A + VA +   + P   +    +   +  Q +D S +  +  +L  VSY  L KAT+GFS ANL+G G FGSVYKG         +LG    EDE    +A+KV N+QR+GA KSF +E + L +I H  LVK+IT+C+SVD  G+DF+A++FEFM  GSLE WLH   ++N    +  + L L  RISI ID+AYALDYLH++C   I+HCDLKP NIL D +M A I DFGLA  L E  +    S S GIRGT GY  PEYG+GC ++TKGD YS+GILLLEM+TGK+PTN +F GGLNLHN+ S++LP+ VI+I+DP  K++   N GD  R E+CL  M  IG++CS    ++R D+   L EL  +R+I 
Sbjct:  340 PNFLEKLS-LKNLNLSFNDFEG--EVPTKGVFSNSSAISLIGNSRLCGGISELKFPRCLTKEEKKARWPLAVK-VAISMACVIPVVTIMSFFLFCRHKNQRKDNSSESSLRQSLLKVSYQGLLKATDGFSPANLIGVGSFGSVYKG---------ILG----EDES--IVAVKVINIQRQGASKSFISECEALKNIRHRNLVKIITSCSSVDFHGNDFKALVFEFMPNGSLENWLHMDLETNTR-QVDIQNLNLVQRISIAIDVAYALDYLHHRCPMPIVHCDLKPSNILFDCDMIAHIGDFGLAKFLLELTNPKQ-SDSIGIRGTIGYTPPEYGVGCDVSTKGDVYSYGILLLEMITGKRPTNCVFEGGLNLHNYASMALPNRVIEISDP--KLLN--NCGDTNRTEECLISMVKIGVSCSMELPQERWDIIKALSELYLVRDIL 760

HSP 2 Score: 61.2326 bits (147), Expect = 2.973e-7
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPFNLHELSRYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVFE 90
            M+TGK+ T+ +F+    L N+ S AL +RVI++ DP  L+     D     +CL  ++ IGV C++E PQ R DI   LS L  VR +  
Sbjct:  674 MITGKRPTNCVFEGGLNLHNYASMALPNRVIEISDPKLLNNCG--DTNRTEECLISMVKIGVSCSMELPQERWDIIKALSELYLVRDILH 761
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4EB16 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 317.775 bits (813), Expect = 6.993e-101
Identity = 166/337 (49.26%), Postives = 219/337 (64.99%), Query Frame = 0
 
Query:  185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLA---ITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLMK--VMTSANKGDDK--RVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
            VSY  L KATNGFSSANL+G G FGSVYKG  D +  +L              +AIKVFN+   GA KSF  E + L +I H  LVK+IT C++VD  G+DF+A+++E MD GSLE WLH T ++       P+ L L  R++I IDIA ALDYLHN C+  I+HCDLKP N+L+D  +   ++DFGLA     L +  S N  +SS GI+G+ GY APEYG+G +++  GD YSFGILLLEM TG++PT+ MF  GLNLHNFV  + PD V +I D L++   + S  +   K  RVE+CL+ ++ +G+ACS  S  +R DM DV  EL SIR++ 
Sbjct:  137 VSYSTLLKATNGFSSANLIGVGSFGSVYKGVLDFDGAQL--------------VAIKVFNMLHHGASKSFLAECEALRNIRHRNLVKIITACSTVDYQGNDFKALVYELMDNGSLEEWLHSTIETKEE-TYAPKNLNLLQRLNITIDIACALDYLHNDCETPIVHCDLKPSNVLLDAELTGHVSDFGLARFLAKLADKASANQ-ASSIGIKGSVGYAAPEYGMGSEVSKSGDVYSFGILLLEMFTGRRPTDHMFSDGLNLHNFVKTAFPDRVKEIADLLLQEGSIESPEQYSTKARRVEECLSLIFKLGIACSVESPANRKDMSDVASELHSIRDML 457

HSP 2 Score: 58.9214 bits (141), Expect = 1.180e-6
Identity = 31/92 (33.70%), Postives = 48/92 (52.17%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF----NLHELSRYD--AAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVR 86
            M TG++ TD MF     L NFV  A  DRV ++ D      ++    +Y   A    +CL ++  +G+ C++ESP  R D+ D  S L ++R
Sbjct:  363 MFTGRRPTDHMFSDGLNLHNFVKTAFPDRVKEIADLLLQEGSIESPEQYSTKARRVEECLSLIFKLGIACSVESPANRKDMSDVASELHSIR 454
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BF39 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))

HSP 1 Score: 330.487 bits (846), Expect = 8.464e-101
Identity = 171/355 (48.17%), Postives = 224/355 (63.10%), Query Frame = 0
 
Query:  185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEY--PSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLM-----------------------KVMTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
            VSY  L KAT+GFS ANL+G G FGSVYKG    E +                +A+KV NLQRRGA KSF  E + L +I H  LVK+IT+C+S+D  G+DF+A+++EFM  GSLE WLH + +S++ G  +P+ + L+ RI+I ID+A ALDYLH  C+  IIHCDLKP N+L+D +M A + DFGLA  LPE   PS    SSS GIRGT GY APEYG+G +++TKGD YSFGILLLEM+TGK+PT+ MF GGLNLH F S++LPD V++I DP++                          +     +  R E+CL  M  IG+ACS  S  DR D+ + + EL  +R + 
Sbjct:  583 VSYERLLKATDGFSLANLIGMGSFGSVYKGILQDEAI----------------VAVKVLNLQRRGASKSFMAECEALRNIRHRNLVKIITSCSSIDFQGNDFKALVYEFMPNGSLERWLHSSSESDN-GQDEPQTMNLHQRINIAIDVACALDYLHYHCEKTIIHCDLKPSNVLLDSDMVAHVGDFGLARFLPELSNPSQ---SSSIGIRGTIGYAAPEYGIGSEVSTKGDAYSFGILLLEMMTGKRPTDNMFEGGLNLHKFASMALPDRVMEILDPILLNNDEAAAVAAAEAEAEAEAEANNNRSPGQARNGNRKEECLISMVKIGVACSVESPPDRMDISNAIQELHLVREVL 917

HSP 2 Score: 57.3806 bits (137), Expect = 4.852e-6
Identity = 36/121 (29.75%), Postives = 53/121 (43.80%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF-------------------------NLHELSRYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVFEDNTGGT 96
            M+TGK+ TD MF+    L  F S AL DRV++++DP                          N       +     +CL  ++ IGV C++ESP  R DI + +  L  VR V +    G+
Sbjct:  804 MMTGKRPTDNMFEGGLNLHKFASMALPDRVMEILDPILLNNDEAAAVAAAEAEAEAEAEANNNRSPGQARNGNRKEECLISMVKIGVACSVESPPDRMDISNAIQELHLVREVLQGTRTGS 924
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D901 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 332.413 bits (851), Expect = 1.858e-100
Identity = 171/353 (48.44%), Postives = 231/353 (65.44%), Query Frame = 0
 
Query:  169 RQLRDPSPQMAPNLATVSYMDLHKATNGFSSANLVGAGGFGSVYKGTF--DQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLM-------KVMTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRN 512
            R  +   P +  +   VSY  L KAT+GFSSANL+G G FGSVY+G    D+E+V                 AIKV NLQ RGA+KSF  E +TL +I H  LV++IT+C+SVD  G++F+A+++EFM  GSLE WLH + ++N  G  + + L L  RI+I ID+A ALDYLH+QC+  IIHCDLKP NIL+D+ M A I DFGLA   PE  + N  SSS G+RGT GY+APEYGLG +M+T GD YS+GILLLEM+TGK+PT  MF  G NLHNF  ++LPD V++I DP++          T+    +  ++ +CL  M +IG+ACS  S + R  + ++L+EL  ++N
Sbjct:  693 RTAQSTVPVLKESFLKVSYEKLLKATDGFSSANLIGFGSFGSVYRGILVQDREFVA----------------AIKVLNLQNRGAIKSFMAECETLRNIRHRNLVRIITSCSSVDFQGNEFKALVYEFMPNGSLERWLHASLETND-GQNEQQRLNLLQRINIAIDVACALDYLHHQCQKPIIHCDLKPSNILLDREMVAHIGDFGLARFFPELTNPNQ-SSSIGVRGTIGYVAPEYGLGSEMSTYGDVYSYGILLLEMITGKRPTENMFEEGHNLHNFARMALPDRVMEIADPVLLDNEEEEARATTIQVNNGSKIVECLISMVNIGVACSTESPQGRMSISNILHELHLVKN 1027

HSP 2 Score: 63.1586 bits (152), Expect = 8.982e-8
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF---NLHELSRY------DAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVR 86
            M+TGK+ T+ MF+  + L NF   AL DRV+++ DP    N  E +R       + +  ++CL  +++IGV C+ ESPQ R  I + L  L  V+
Sbjct:  932 MITGKRPTENMFEEGHNLHNFARMALPDRVMEIADPVLLDNEEEEARATTIQVNNGSKIVECLISMVNIGVACSTESPQGRMSISNILHELHLVK 1026
[Close]
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540N535 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 321.242 bits (822), Expect = 2.276e-100
Identity = 169/340 (49.71%), Postives = 218/340 (64.12%), Query Frame = 0
 
Query:  185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPS----MNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITD-PLMKVMTSAN----KGDDKRVEDCLTRMYSIGLACSKTSAKDR-PDMRDVLYELESIRNIF 514
            VSY  L KAT+GFS ANL+GAG FGSVYKG FD             ED+    +A+KVFNL R GA +SF  E + L +I H  L+K+IT C+SVD  G+DF+A+++EFMD GSLE WLHP   +       P+ L+L  R+ I I +A ALDYLHN C+  I+HCDLKP N+L+D  +   ++DFGLA  L +  S    +   +SS GIRGT GY APEYG+G +++T GD YSFGILLLEM TGK+PT+ MF   LNLHNFV ++LP  V +I D PL++  TS N          VE CL+ ++ IG+ACS  S   R  +++D   EL SIRN F
Sbjct:  282 VSYATLLKATDGFSKANLIGAGSFGSVYKGVFD-------------EDDKAQLVAVKVFNLLRHGASRSFIAECEALRNIRHRNLIKIITVCSSVDFHGNDFKALVYEFMDNGSLEEWLHPPTGTEELRDHVPKKLSLLQRLEIAIGVACALDYLHNHCETPIVHCDLKPSNVLLDNELTGHVSDFGLARFLSQVTSNVSAIQNQTSSVGIRGTVGYAAPEYGMGSEVSTNGDVYSFGILLLEMFTGKRPTDIMFGDSLNLHNFVKMALPGQVTEIADAPLLQGGTSKNLNQCSARIHEVEVCLSSIFRIGIACSVESTTKRLKNIKDAASELHSIRNAF 608

HSP 2 Score: 51.9878 bits (123), Expect = 2.026e-4
Identity = 36/98 (36.73%), Postives = 51/98 (52.04%), Query Frame = 0
 
Query:    1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVID-PF-------NLHELSRYDAAMAMDCLEMLLDIGVRCALESPQFR-PDIKDTLSILETVRRVF 89
            M TGK+ TD MF  S  L NFV  AL  +V ++ D P        NL++ S     + + CL  +  IG+ C++ES   R  +IKD  S L ++R  F
Sbjct:  512 MFTGKRPTDIMFGDSLNLHNFVKMALPGQVTEIADAPLLQGGTSKNLNQCSARIHEVEV-CLSSIFRIGIACSVESTTKRLKNIKDAASELHSIRNAF 608
Match NameStatsDescription
A0A2P6QV76E-Value: 5.304e-107, PID: 49.70Protein kinase domain-containing protein {ECO:0000... [more]
A0A4S4ELQ3E-Value: 3.584e-106, PID: 48.16Protein kinase domain-containing protein {ECO:0000... [more]
V4SLI2E-Value: 1.266e-104, PID: 48.46Protein kinase domain-containing protein {ECO:0000... [more]
A0A540NMQ1E-Value: 1.545e-101, PID: 48.82Protein kinase domain-containing protein {ECO:0000... [more]
A0A5J5AYN8E-Value: 1.551e-101, PID: 48.44Protein kinase domain-containing protein {ECO:0000... [more]
A0A7N2MSV5E-Value: 1.790e-101, PID: 44.39Protein kinase domain-containing protein {ECO:0000... [more]
A0A5E4EB16E-Value: 6.993e-101, PID: 49.26Protein kinase domain-containing protein {ECO:0000... [more]
A0A5B7BF39E-Value: 8.464e-101, PID: 48.17Protein kinase domain-containing protein {ECO:0000... [more]
A0A4S4D901E-Value: 1.858e-100, PID: 48.44Protein kinase domain-containing protein {ECO:0000... [more]
A0A540N535E-Value: 2.276e-100, PID: 49.71Protein kinase domain-containing protein {ECO:0000... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.