XM_017368170.1

Resource Type: 
Polypeptide
Name: 
XM_017368170.1
Identifier: 
XM_017368170.1-protein
Sequence: 
MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRR
LPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLID
TMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWT
ITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAG
YDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRF
PAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGH
LEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDY
RWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYT
GSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVA
KWDFSDKSLNQSSETETV
Sequence Length: 
468
Sequence Checksum: 
012ad8f5368bc617efa8930d97786e3e
View location in JBrowse: 
DCARv2_Chr8:25923958..25930331-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017368170.1, derives from mRNA, XM_017368170.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LTV4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7150222.1}))

HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 324/428 (75.70%), Postives = 369/428 (86.21%), Query Frame = 0
 
Query:   29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSN-LSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
            LDH++AQLT+L+SEP+  +SR   GKS+LP+SPV MLA RE+N+SGRGRFSSAD CHVL+RYLPVNGP  ID M+S  YVSQFS DGSLFVAGFQES IRIYNV+ GWKVQKDI A+SLRWTITDASLSPDQR+LVY+SMSPIVHIVN+GS+ T+S AN+TEIHEGLDFS G D E +     +FGIFSVKFS DGRELVAASSD SIY+YDL ANKL++R PAH  DVN+VCFADESG++IYSGSDD LCKV DRRC +   QA+GVL GHLEG+T IDSRGDGRY ISNGKDQ+IKLWDIRKMSS  +  NP  RN  WDYRWM+YP R RN +HPND+SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYD++TGAQVA+L+YH  PVRDCSWHP YPTLVSSSWDG +A+W+FS
Sbjct:   33 LDHEVAQLTKLRSEPNGLLSRVGLGKSLLPVSPVMMLAGRESNYSGRGRFSSADTCHVLSRYLPVNGPRKIDQMNSCAYVSQFSADGSLFVAGFQESEIRIYNVNGGWKVQKDILAKSLRWTITDASLSPDQRYLVYASMSPIVHIVNVGSSVTKSHANVTEIHEGLDFSVGDDIEGE----RSFGIFSVKFSTDGRELVAASSDDSIYVYDLAANKLALRIPAHKSDVNSVCFADESGNVIYSGSDDNLCKVWDRRCFVTKGQAAGVLTGHLEGITSIDSRGDGRYFISNGKDQSIKLWDIRKMSSKVICPNPRLRN-DWDYRWMDYPPRARNRKHPNDLSLATYEGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDVVTGAQVARLEYHGDPVRDCSWHPFYPTLVSSSWDGVIAEWEFS 455
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1A726 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})

HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 318/456 (69.74%), Postives = 380/456 (83.33%), Query Frame = 0
 
Query:    1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSA-GYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
            MSR+R FL E       +  +       LDH+I+QLT+++S PH+ M   LPGK   P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S  YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS   +SVAN+TEIHEGL+FS+  YD+  D+Y    FGIFSVKFS DGRELVA SSD+SIY+YDL A +LS++ PAH  DVN VCFADE+GH+IYSGSDD LCKV DRRC    EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN++++P  R+  WDYRWM+YP  +RN R+P+D+SLATYKGHSVLRTLIRCYFSPA+STGQK+IYTGS+D SVYIYD+++GAQVAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct:    1 MSRSRRFLNERARGDGMKLIDERGGTSVLDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCTYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSPTYDY--DNY---TFGIFSVKFSTDGRELVAGSSDSSIYVYDLEAKRLSLQIPAHTSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINYSPRPRSYDWDYRWMDYPEHVRNKRNPHDLSLATYKGHSVLRTLIRCYFSPAHSTGQKFIYTGSSDSSVYIYDVVSGAQVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 451
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A979 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})

HSP 1 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 320/426 (75.12%), Postives = 361/426 (84.74%), Query Frame = 0
 
Query:   29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 454
            LDH+IAQLT+L S PH+ +SR + G SMLP+SPV+MLA RE N+SGRGRFSSAD CHVL+RYLP+     +D MDS  YVSQFS DGSLFVAGFQES IR+YNVD+GWKVQKDI+ARSLRWTITD +LSPDQRFLVY+S+SP+VHIVNIGSAATES+ANITEIHEGL FS     +DDD  Y +FGIFSVKFS DGRELVAA SD SIY+YDL ANKL++R PAH  DVN VCFADESGH+IYSGSDD LCKV DRRC     QA+GVL+GH+EG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSSN++ N   R+  WDYRWM+YP   RN RHPND SLATY+GH VLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++G QVA+L YHE  VRDCSWHP YPT+VSSSWDG +AKW+F
Sbjct:   33 LDHEIAQLTKLMSGPHERLSRMVTGNSMLPVSPVKMLAGREFNYSGRGRFSSADRCHVLSRYLPIGSALTVDQMDSCAYVSQFSADGSLFVAGFQESRIRVYNVDAGWKVQKDIQARSLRWTITDTTLSPDQRFLVYASISPVVHIVNIGSAATESLANITEIHEGLVFS-----DDDDGEY-SFGIFSVKFSTDGRELVAACSDGSIYVYDLEANKLTLRIPAHTSDVNAVCFADESGHLIYSGSDDNLCKVWDRRCFATKGQAAGVLMGHIEGITFIDSRGDGRYFISNGKDQAIKLWDIRKMSSNVTCNSRLRDHHWDYRWMDYPTEARNLRHPNDQSLATYRGHEVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGTQVARLKYHEDTVRDCSWHPFYPTIVSSSWDGNIAKWEF 452
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LWV9 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})

HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 320/449 (71.27%), Postives = 368/449 (81.96%), Query Frame = 0
 
Query:   12 GSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF--SDKS 458
             S  PS+P N       LDH+IA LT+L SEPHK ++R  PG+S LPIS V+ML  RE N SGRGRFSSADGCHVL+RYLP  GP  +D M+S  Y SQFS DGSLFVAGFQ SHIRIYNV+ GWKVQKDI A+SLRWTITD SLSPDQ++LVY+SMSP+VHIVN+GSAATESVANITEIH+GLDFS        D   D FGIFSVK+SNDGRELVAASS+ SIY+YDL A +LS++ PAHM DVNTVCFADE+GH++YSGSDD LCKV DRRC I   QA+GVL+GHL+G+TF+DSRGDGRYLISNGKDQT KLWDIRKMSS + + P  R+  WDYRWMEYP + R  RHP D SLATY+GHSVLRTLIRCYFSP YSTGQKYIYTGS+D SVYIYDL++GAQVA+LDYH+ PVRDC+WHP YP ++SSSWDG + KW+F  SD+S
Sbjct:   23 ASEGPSQPSNH------LDHEIAHLTKLGSEPHKLLTRTAPGRSKLPISTVKMLVARETNHSGRGRFSSADGCHVLSRYLPTTGPCRVDQMNSRAYTSQFSADGSLFVAGFQGSHIRIYNVNKGWKVQKDILAKSLRWTITDTSLSPDQQYLVYASMSPMVHIVNVGSAATESVANITEIHDGLDFSV-------DDINDEFGIFSVKYSNDGRELVAASSNNSIYVYDLEAKRLSLQIPAHMSDVNTVCFADETGHLLYSGSDDNLCKVWDRRCFITKGQAAGVLMGHLQGITFLDSRGDGRYLISNGKDQTTKLWDIRKMSSTVIY-PKTRDADWDYRWMEYPQKARKLRHPRDQSLATYRGHSVLRTLIRCYFSPTYSTGQKYIYTGSSDSSVYIYDLVSGAQVARLDYHDAPVRDCNWHPVYPMIISSSWDGDIVKWEFPGSDES 457
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RGG1 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})

HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 325/439 (74.03%), Postives = 364/439 (82.92%), Query Frame = 0
 
Query:   16 PSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 454
            PS+P N       LDH+IAQLT+L+S P   + R  PG+  LPIS  +ML  RE N SGRGRFSSADGCHVL+RYLPVNG   +D M S  YVSQFS DGSLFVAGFQESHI+IYNV+ GWKVQKDI A+SLRWTITD SLSPDQ +LVY+SMSPIVH+VN+GSAATESVANITEIH+GLDFS   D  DD+     FGIFSVKFSNDGRELVAASS+ SIY+YDL A KLS++ PAHM DVNTVCFADESGH++YSGSDD LCKV DRRC I   QA+GVL+GHLEG+TFIDSRGDGRYLISNGKDQTIKLWDIRKMSS   + P  R   WDYRWMEYP   R  +HP+D SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++GAQVA+LDYHE PVRDCSWHP YPT++SSSWDG +AKW+F
Sbjct:   27 PSKPSNY------LDHEIAQLTKLRSMPQGLLGREGPGRLRLPISTFKMLVGREGNHSGRGRFSSADGCHVLSRYLPVNGAFRVDRMKSRAYVSQFSADGSLFVAGFQESHIKIYNVNGGWKVQKDILAKSLRWTITDTSLSPDQHYLVYASMSPIVHVVNVGSAATESVANITEIHDGLDFSV--DNSDDE-----FGIFSVKFSNDGRELVAASSNNSIYVYDLEARKLSLQIPAHMSDVNTVCFADESGHLLYSGSDDNLCKVWDRRCFITKGQAAGVLMGHLEGITFIDSRGDGRYLISNGKDQTIKLWDIRKMSSTAMY-PRLREGNWDYRWMEYPPHARTLKHPHDQSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGAQVARLDYHEAPVRDCSWHPLYPTMISSSWDGDIAKWEF 451
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VN90 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})

HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 320/426 (75.12%), Postives = 361/426 (84.74%), Query Frame = 0
 
Query:   29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 454
            LDH+IAQLT+L+S PH+ +SR +PG+  +PIS V+ML  RE N+SGRGRFSSAD CH+L+RYLPVNGP  +D M S  YVSQFS DGSLFVAGFQ SHIRIYNVD GWKVQK+I A+SLRWTITD SLSPD  +LVYSSMSPI+HIVN+GS  TES+ANITEIH+GLDFS      DDD  YD FGIFSVKFSNDGRELVAASS+ SIY+YDL A KL +R PAHM DVNTVCFAD++GH+IYSGSDD  CKV DRRC I   QA+GVL+GHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSN  + P  R+  WDYRWMEYP R R  RHP D SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++GA+VA+LD+H+ PVRDCSWHP YP L+SSSWDG +AKW+F
Sbjct:   33 LDHEIAQLTKLRSGPHELLSRAVPGRLRVPISTVKMLVAREGNYSGRGRFSSADSCHILSRYLPVNGPFKVDRMKSRAYVSQFSADGSLFVAGFQGSHIRIYNVDGGWKVQKNILAKSLRWTITDTSLSPDLHYLVYSSMSPIIHIVNVGSPGTESLANITEIHDGLDFSV-----DDD--YDEFGIFSVKFSNDGRELVAASSNNSIYVYDLEAKKLCLRIPAHMSDVNTVCFADDTGHLIYSGSDDNFCKVWDRRCFITKGQAAGVLMGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNAMY-PRLRDDDWDYRWMEYPPRSRTLRHPWDQSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGAEVARLDHHDAPVRDCSWHPFYPMLISSSWDGDIAKWEF 450
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7A7V0 ((Uncharacterized protein {ECO:0000313|EMBL:KZV14942.1}))

HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 311/428 (72.66%), Postives = 368/428 (85.98%), Query Frame = 0
 
Query:   30 DHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFSDK 457
            D +I+QLT++KS PH ++SR +PGK+ LPISPV+ML  RE N++GRGRFS +DGCHVL+RYLPVNGPS++DT+ S  YVSQFS DGSLF+AGFQ+SHIRIY+VD GWK+ KDI+ARSLRWTITDASLSPD+RFLVYSS+SPI HIVN+ SA  ES+AN+TEIHEGL+FS+  D   DDY   +FGIFSVKFSNDGRELVAASSD SIY+YDL + +L++R  AHM DVN VCFADESGHIIYSGSDD LCKV DRRC +N  QA+GVL+GHLEG+TFID+RGDGRY ISNGKDQ+IKLWDIRKMSS++++   +R   WDYRWMEYP R +  RHP+D+SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS D SVYIYDL+ G QVAKLD+H+ PVRDC+WHP+YP +VSSSWDG +A W+F  K
Sbjct:   30 DDEISQLTKIKSTPHGHLSRTVPGKAKLPISPVKMLLGRECNYNGRGRFSLSDGCHVLSRYLPVNGPSVVDTIRSCTYVSQFSTDGSLFIAGFQDSHIRIYDVDLGWKIHKDIQARSLRWTITDASLSPDRRFLVYSSISPIAHIVNVESATKESLANVTEIHEGLEFSSNVD-NYDDY---SFGIFSVKFSNDGRELVAASSDQSIYVYDLASKRLNLRIQAHMSDVNAVCFADESGHIIYSGSDDHLCKVWDRRCFVNRGQAAGVLIGHLEGITFIDTRGDGRYFISNGKDQSIKLWDIRKMSSDVNYTSRRRYADWDYRWMEYPERAKKLRHPDDLSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSTDGSVYIYDLVNGDQVAKLDFHDDPVRDCNWHPSYPMIVSSSWDGIIANWEFPGK 453
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7F1N4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g080690.3.1}))

HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 315/455 (69.23%), Postives = 375/455 (82.42%), Query Frame = 0
 
Query:    1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
            MSR+R FL E       +  +     + LDH+I+QLT+++S PH+ M   LPGK   P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S  YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS   +SVAN+TEIHEGL+FS  +   D D Y   FGIFSVKFS DGRELVA  SD SIY+YDL A +LS+R PAHM DVN VCFADE+GH+IYSGSDD LCKV DRRC    EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN++++P  R+  WDYRWM YP  +RN R+P+D+SL+TYKGHSVLRTLIRCYFSPA+STGQK+IY GS+D SVYIYD+++GA+VAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct:    1 MSRSRRFLNERARGDGMKLIDEGGTSV-LDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFS--FPTYDHDNY--TFGIFSVKFSTDGRELVAGCSDNSIYVYDLEAKRLSLRIPAHMSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINYSPRPRSYDWDYRWMGYPEHVRNKRNPHDLSLSTYKGHSVLRTLIRCYFSPAHSTGQKFIYAGSSDSSVYIYDVVSGARVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 450
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IHW5 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})

HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0
Identity = 308/428 (71.96%), Postives = 368/428 (85.98%), Query Frame = 0
 
Query:   29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSA-GYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
            LDH+I+QLT+++S PH+ M   LPGK   P+S V+MLA RE N++GRGRFS +D CH+L+RYLP NGPS++D M S  YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS   +SVAN+TEIHEGL+FS+  YD+  D+Y    FGIFSVKFS DGRELVA SSD+SIY+YDL A +LS++ PAH  DVN VCFADE+GH+IYSGSDD LCKV DRRC    EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN++++P  R+  WDYRWM+YP  +RN ++P+D+SLATYKGHSVLRTLIRCYFSP +STGQK+IYTGS+D SVYIYD+++GAQVAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct:   29 LDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSXSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSPTYDY--DNY---TFGIFSVKFSTDGRELVAGSSDSSIYVYDLEAKRLSLQIPAHTSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINYSPRPRSYDWDYRWMDYPEHVRNKKNPHDLSLATYKGHSVLRTLIRCYFSPTHSTGQKFIYTGSSDSSVYIYDVVSGAQVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 451
[Close]
BLAST of XM_017368170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BHB3 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})

HSP 1 Score: 660.603 bits (1703), Expect = 0.000e+0
Identity = 313/455 (68.79%), Postives = 377/455 (82.86%), Query Frame = 0
 
Query:    1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 455
            MSR+R FL E       +  +     + LDH+I+QLT+++S PH+ M   LP K   P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S  YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS   +SVAN+TEIHEGL+FS+   ++ D+Y    FGIFSVKFS DGRELVA  SD+SIY+YDL A +LS+R PAHM DVN VCFADE+GH+IYSGSDD LCKV DRRC    EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN++++P  R+  WDYRWM YP  +RN R+P+D+SL+TYKGHSVLRTLIRCYFSPA+STGQK+IY GS+D SVYIYD+++GA+VAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct:    1 MSRSRRFLNERARGDGMKLIDEGGTSV-LDHEISQLTKIRSNPHERMRHLLPCKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSP-TYDHDNY---TFGIFSVKFSTDGRELVAGCSDSSIYVYDLEAKRLSLRIPAHMSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINYSPRPRSYDWDYRWMGYPEHVRNKRNPHDLSLSTYKGHSVLRTLIRCYFSPAHSTGQKFIYAGSSDSSVYIYDVVSGARVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 450
Match NameStatsDescription
A0A834LTV4E-Value: 0.000e+0, PID: 75.70(Uncharacterized protein {ECO:0000313|EMBL:KAF7150... [more]
M1A726E-Value: 0.000e+0, PID: 69.74LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more]
A0A5J5A979E-Value: 0.000e+0, PID: 75.12LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more]
A0A7N2LWV9E-Value: 0.000e+0, PID: 71.27LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more]
A0A5N6RGG1E-Value: 0.000e+0, PID: 74.03LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more]
A0A6A1VN90E-Value: 0.000e+0, PID: 75.12LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more]
A0A2Z7A7V0E-Value: 0.000e+0, PID: 72.66(Uncharacterized protein {ECO:0000313|EMBL:KZV1494... [more]
A0A3Q7F1N4E-Value: 0.000e+0, PID: 69.23(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
A0A0V0IHW5E-Value: 0.000e+0, PID: 71.96LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more]
A0A6N2BHB3E-Value: 0.000e+0, PID: 68.79LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.