Resource Type:
Polypeptide
Name:
XM_017368168.1
Identifier:
XM_017368168.1-protein
Sequence:
MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRR
LPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLID
TMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWT
ITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAG
YDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRF
PAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGH
LEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNV
RWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQK
YIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWD
GTVAKWDFSDKSLNQSSETETV
Sequence Length:
472
Sequence Checksum:
da7e706cc1058f046dc3c6471007105c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017368168.1, derives from mRNA, XM_017368168.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LTV4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7150222.1}))
HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0
Identity = 325/431 (75.41%), Postives = 371/431 (86.08%), Query Frame = 0
Match: A0A834LTV4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7150222.1}))
HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0
Identity = 325/431 (75.41%), Postives = 371/431 (86.08%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 459
LDH++AQLT+L+SEP+ +SR GKS+LP+SPV MLA RE+N+SGRGRFSSAD CHVL+RYLPVNGP ID M+S YVSQFS DGSLFVAGFQES IRIYNV+ GWKVQKDI A+SLRWTITDASLSPDQR+LVY+SMSPIVHIVN+GS+ T+S AN+TEIHEGLDFS G D E + +FGIFSVKFS DGRELVAASSD SIY+YDL ANKL++R PAH DVN+VCFADESG++IYSGSDD LCKV DRRC + QA+GVL GHLEG+T IDSRGDGRY ISNGKDQ+IKLWDIRKMSS + +C NP RN WDYRWM+YP R RN +HPND+SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYD++TGAQVA+L+YH PVRDCSWHP YPTLVSSSWDG +A+W+FS
Sbjct: 33 LDHEVAQLTKLRSEPNGLLSRVGLGKSLLPVSPVMMLAGRESNYSGRGRFSSADTCHVLSRYLPVNGPRKIDQMNSCAYVSQFSADGSLFVAGFQESEIRIYNVNGGWKVQKDILAKSLRWTITDASLSPDQRYLVYASMSPIVHIVNVGSSVTKSHANVTEIHEGLDFSVGDDIEGE----RSFGIFSVKFSTDGRELVAASSDDSIYVYDLAANKLALRIPAHKSDVNSVCFADESGNVIYSGSDDNLCKVWDRRCFVTKGQAAGVLTGHLEGITSIDSRGDGRYFISNGKDQSIKLWDIRKMSSKV---ICPNPRLRN-DWDYRWMDYPPRARNRKHPNDLSLATYEGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDVVTGAQVARLEYHGDPVRDCSWHPFYPTLVSSSWDGVIAEWEFS 455
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A979 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 320/430 (74.42%), Postives = 361/430 (83.95%), Query Frame = 0
Match: A0A5J5A979 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 320/430 (74.42%), Postives = 361/430 (83.95%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 458
LDH+IAQLT+L S PH+ +SR + G SMLP+SPV+MLA RE N+SGRGRFSSAD CHVL+RYLP+ +D MDS YVSQFS DGSLFVAGFQES IR+YNVD+GWKVQKDI+ARSLRWTITD +LSPDQRFLVY+S+SP+VHIVNIGSAATES+ANITEIHEGL FS +DDD Y +FGIFSVKFS DGRELVAA SD SIY+YDL ANKL++R PAH DVN VCFADESGH+IYSGSDD LCKV DRRC QA+GVL+GH+EG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSSN++ N R+ WDYRWM+YP RN RHPND SLATY+GH VLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++G QVA+L YHE VRDCSWHP YPT+VSSSWDG +AKW+F
Sbjct: 33 LDHEIAQLTKLMSGPHERLSRMVTGNSMLPVSPVKMLAGREFNYSGRGRFSSADRCHVLSRYLPIGSALTVDQMDSCAYVSQFSADGSLFVAGFQESRIRVYNVDAGWKVQKDIQARSLRWTITDTTLSPDQRFLVYASISPVVHIVNIGSAATESLANITEIHEGLVFS-----DDDDGEY-SFGIFSVKFSTDGRELVAACSDGSIYVYDLEANKLTLRIPAHTSDVNAVCFADESGHLIYSGSDDNLCKVWDRRCFATKGQAAGVLMGHIEGITFIDSRGDGRYFISNGKDQAIKLWDIRKMSSNVT----CNSRLRDHHWDYRWMDYPTEARNLRHPNDQSLATYRGHEVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGTQVARLKYHEDTVRDCSWHPFYPTIVSSSWDGNIAKWEF 452
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1A726 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 318/460 (69.13%), Postives = 380/460 (82.61%), Query Frame = 0
Match: M1A726 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 318/460 (69.13%), Postives = 380/460 (82.61%), Query Frame = 0
Query: 1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSA-GYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 459
MSR+R FL E + + LDH+I+QLT+++S PH+ M LPGK P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS +SVAN+TEIHEGL+FS+ YD+ D+Y FGIFSVKFS DGRELVA SSD+SIY+YDL A +LS++ PAH DVN VCFADE+GH+IYSGSDD LCKV DRRC EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN+++ +P R+ WDYRWM+YP +RN R+P+D+SLATYKGHSVLRTLIRCYFSPA+STGQK+IYTGS+D SVYIYD+++GAQVAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct: 1 MSRSRRFLNERARGDGMKLIDERGGTSVLDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCTYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSPTYDY--DNY---TFGIFSVKFSTDGRELVAGSSDSSIYVYDLEAKRLSLQIPAHTSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINY----SPRPRSYDWDYRWMDYPEHVRNKRNPHDLSLATYKGHSVLRTLIRCYFSPAHSTGQKFIYTGSSDSSVYIYDVVSGAQVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 451
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LWV9 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0
Identity = 320/453 (70.64%), Postives = 368/453 (81.24%), Query Frame = 0
Match: A0A7N2LWV9 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0
Identity = 320/453 (70.64%), Postives = 368/453 (81.24%), Query Frame = 0
Query: 12 GSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF--SDKS 462
S PS+P N LDH+IA LT+L SEPHK ++R PG+S LPIS V+ML RE N SGRGRFSSADGCHVL+RYLP GP +D M+S Y SQFS DGSLFVAGFQ SHIRIYNV+ GWKVQKDI A+SLRWTITD SLSPDQ++LVY+SMSP+VHIVN+GSAATESVANITEIH+GLDFS D D FGIFSVK+SNDGRELVAASS+ SIY+YDL A +LS++ PAHM DVNTVCFADE+GH++YSGSDD LCKV DRRC I QA+GVL+GHL+G+TF+DSRGDGRYLISNGKDQT KLWDIRKMSS + + P R+ WDYRWMEYP + R RHP D SLATY+GHSVLRTLIRCYFSP YSTGQKYIYTGS+D SVYIYDL++GAQVA+LDYH+ PVRDC+WHP YP ++SSSWDG + KW+F SD+S
Sbjct: 23 ASEGPSQPSNH------LDHEIAHLTKLGSEPHKLLTRTAPGRSKLPISTVKMLVARETNHSGRGRFSSADGCHVLSRYLPTTGPCRVDQMNSRAYTSQFSADGSLFVAGFQGSHIRIYNVNKGWKVQKDILAKSLRWTITDTSLSPDQQYLVYASMSPMVHIVNVGSAATESVANITEIHDGLDFSV-------DDINDEFGIFSVKYSNDGRELVAASSNNSIYVYDLEAKRLSLQIPAHMSDVNTVCFADETGHLLYSGSDDNLCKVWDRRCFITKGQAAGVLMGHLQGITFLDSRGDGRYLISNGKDQTTKLWDIRKMSSTVIY-----PKTRDADWDYRWMEYPQKARKLRHPRDQSLATYRGHSVLRTLIRCYFSPTYSTGQKYIYTGSSDSSVYIYDLVSGAQVARLDYHDAPVRDCNWHPVYPMIISSSWDGDIVKWEFPGSDES 457
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RGG1 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 663.3 bits (1710), Expect = 0.000e+0
Identity = 325/443 (73.36%), Postives = 364/443 (82.17%), Query Frame = 0
Match: A0A5N6RGG1 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 663.3 bits (1710), Expect = 0.000e+0
Identity = 325/443 (73.36%), Postives = 364/443 (82.17%), Query Frame = 0
Query: 16 PSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 458
PS+P N LDH+IAQLT+L+S P + R PG+ LPIS +ML RE N SGRGRFSSADGCHVL+RYLPVNG +D M S YVSQFS DGSLFVAGFQESHI+IYNV+ GWKVQKDI A+SLRWTITD SLSPDQ +LVY+SMSPIVH+VN+GSAATESVANITEIH+GLDFS D DD+ FGIFSVKFSNDGRELVAASS+ SIY+YDL A KLS++ PAHM DVNTVCFADESGH++YSGSDD LCKV DRRC I QA+GVL+GHLEG+TFIDSRGDGRYLISNGKDQTIKLWDIRKMSS + P R WDYRWMEYP R +HP+D SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++GAQVA+LDYHE PVRDCSWHP YPT++SSSWDG +AKW+F
Sbjct: 27 PSKPSNY------LDHEIAQLTKLRSMPQGLLGREGPGRLRLPISTFKMLVGREGNHSGRGRFSSADGCHVLSRYLPVNGAFRVDRMKSRAYVSQFSADGSLFVAGFQESHIKIYNVNGGWKVQKDILAKSLRWTITDTSLSPDQHYLVYASMSPIVHVVNVGSAATESVANITEIHDGLDFSV--DNSDDE-----FGIFSVKFSNDGRELVAASSNNSIYVYDLEARKLSLQIPAHMSDVNTVCFADESGHLLYSGSDDNLCKVWDRRCFITKGQAAGVLMGHLEGITFIDSRGDGRYLISNGKDQTIKLWDIRKMSSTAMY-----PRLREGNWDYRWMEYPPHARTLKHPHDQSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGAQVARLDYHEAPVRDCSWHPLYPTMISSSWDGDIAKWEF 451
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VN90 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 320/430 (74.42%), Postives = 361/430 (83.95%), Query Frame = 0
Match: A0A6A1VN90 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 320/430 (74.42%), Postives = 361/430 (83.95%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 458
LDH+IAQLT+L+S PH+ +SR +PG+ +PIS V+ML RE N+SGRGRFSSAD CH+L+RYLPVNGP +D M S YVSQFS DGSLFVAGFQ SHIRIYNVD GWKVQK+I A+SLRWTITD SLSPD +LVYSSMSPI+HIVN+GS TES+ANITEIH+GLDFS DDD YD FGIFSVKFSNDGRELVAASS+ SIY+YDL A KL +R PAHM DVNTVCFAD++GH+IYSGSDD CKV DRRC I QA+GVL+GHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSN + P R+ WDYRWMEYP R R RHP D SLATY+GHSVLRTLIRCYFSPAYSTGQKYIYTGS+D SVYIYDL++GA+VA+LD+H+ PVRDCSWHP YP L+SSSWDG +AKW+F
Sbjct: 33 LDHEIAQLTKLRSGPHELLSRAVPGRLRVPISTVKMLVAREGNYSGRGRFSSADSCHILSRYLPVNGPFKVDRMKSRAYVSQFSADGSLFVAGFQGSHIRIYNVDGGWKVQKNILAKSLRWTITDTSLSPDLHYLVYSSMSPIIHIVNVGSPGTESLANITEIHDGLDFSV-----DDD--YDEFGIFSVKFSNDGRELVAASSNNSIYVYDLEAKKLCLRIPAHMSDVNTVCFADDTGHLIYSGSDDNFCKVWDRRCFITKGQAAGVLMGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNAMY-----PRLRDDDWDYRWMEYPPRSRTLRHPWDQSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSSDSSVYIYDLVSGAEVARLDHHDAPVRDCSWHPFYPMLISSSWDGDIAKWEF 450
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7F1N4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g080690.3.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 315/459 (68.63%), Postives = 375/459 (81.70%), Query Frame = 0
Match: A0A3Q7F1N4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g080690.3.1}))
HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 315/459 (68.63%), Postives = 375/459 (81.70%), Query Frame = 0
Query: 1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 459
MSR+R FL E + + + LDH+I+QLT+++S PH+ M LPGK P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS +SVAN+TEIHEGL+FS + D D Y FGIFSVKFS DGRELVA SD SIY+YDL A +LS+R PAHM DVN VCFADE+GH+IYSGSDD LCKV DRRC EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN+++ +P R+ WDYRWM YP +RN R+P+D+SL+TYKGHSVLRTLIRCYFSPA+STGQK+IY GS+D SVYIYD+++GA+VAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct: 1 MSRSRRFLNERARGDGMKLIDEGGTSV-LDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFS--FPTYDHDNY--TFGIFSVKFSTDGRELVAGCSDNSIYVYDLEAKRLSLRIPAHMSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINY----SPRPRSYDWDYRWMGYPEHVRNKRNPHDLSLSTYKGHSVLRTLIRCYFSPAHSTGQKFIYAGSSDSSVYIYDVVSGARVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 450
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IHW5 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 655.596 bits (1690), Expect = 0.000e+0
Identity = 308/432 (71.30%), Postives = 368/432 (85.19%), Query Frame = 0
Match: A0A0V0IHW5 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 655.596 bits (1690), Expect = 0.000e+0
Identity = 308/432 (71.30%), Postives = 368/432 (85.19%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSA-GYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 459
LDH+I+QLT+++S PH+ M LPGK P+S V+MLA RE N++GRGRFS +D CH+L+RYLP NGPS++D M S YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS +SVAN+TEIHEGL+FS+ YD+ D+Y FGIFSVKFS DGRELVA SSD+SIY+YDL A +LS++ PAH DVN VCFADE+GH+IYSGSDD LCKV DRRC EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN+++ +P R+ WDYRWM+YP +RN ++P+D+SLATYKGHSVLRTLIRCYFSP +STGQK+IYTGS+D SVYIYD+++GAQVAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct: 29 LDHEISQLTKIRSNPHERMRHLLPGKGKEPVSSVKMLAAREGNYTGRGRFSXSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSPTYDY--DNY---TFGIFSVKFSTDGRELVAGSSDSSIYVYDLEAKRLSLQIPAHTSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINY----SPRPRSYDWDYRWMDYPEHVRNKKNPHDLSLATYKGHSVLRTLIRCYFSPTHSTGQKFIYTGSSDSSVYIYDVVSGAQVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 451
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P4H1 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 655.596 bits (1690), Expect = 0.000e+0
Identity = 321/431 (74.48%), Postives = 362/431 (83.99%), Query Frame = 0
Match: A0A2R6P4H1 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 655.596 bits (1690), Expect = 0.000e+0
Identity = 321/431 (74.48%), Postives = 362/431 (83.99%), Query Frame = 0
Query: 29 LDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYK-RNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDF 458
LDHDIAQLT+L+S P++++SR +PGKS + +SPV+ML RE N+SGRGRFSSAD CHVL+RYLPVNGP IDTM S YVSQFS DGSLFVA +QES IRIYNVD+GWKVQKDIRA+SLRWTITDASLSPDQR LVYSSMSP+VHIVN+ SAATES ANITEIHEGLDF+ DDD Y +FGIFSVKFS DGRELVAASSD +IY+YDL N+L++R P+H VN VCFADES ++IYSGSDD LCKV DRRC + +A+GVL GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSSN++ S P + RN WDYR MEYP RN HPND SLATYKGHSVLRTLIRCYFSP YSTGQKYIYTGS+D+SVYIYDL++G QVAKLDYHE PVRDCSWHP YP LVSSSWD T+A+W+F
Sbjct: 33 LDHDIAQLTKLRSGPNEFLSRAIPGKSKVLVSPVKMLLGREGNYSGRGRFSSADNCHVLSRYLPVNGPRKIDTMQSCAYVSQFSEDGSLFVAAYQESEIRIYNVDNGWKVQKDIRAKSLRWTITDASLSPDQRLLVYSSMSPVVHIVNVTSAATESHANITEIHEGLDFAV-----DDDSEY-SFGIFSVKFSTDGRELVAASSDDAIYVYDLQENRLALRIPSHKSHVNAVCFADESCNVIYSGSDDTLCKVWDRRCFVTKGEAAGVLNGHLEGITFIDSRGDGRYFISNGKDQAIKLWDIRKMSSNITG---SIPVQYRNYDWDYRLMEYPTHARNLVHPNDQSLATYKGHSVLRTLIRCYFSPVYSTGQKYIYTGSSDNSVYIYDLVSGTQVAKLDYHEDPVRDCSWHPFYPILVSSSWDCTIAQWEF 454
BLAST of XM_017368168.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BHB3 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 313/459 (68.19%), Postives = 377/459 (82.14%), Query Frame = 0
Match: A0A6N2BHB3 (LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135})
HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 313/459 (68.19%), Postives = 377/459 (82.14%), Query Frame = 0
Query: 1 MSRTRNFLVECGSATPSEPYNSHDELLGLDHDIAQLTRLKSEPHKYMSRRLPGKSMLPISPVEMLARREANFSGRGRFSSADGCHVLNRYLPVNGPSLIDTMDSSGYVSQFSGDGSLFVAGFQESHIRIYNVDSGWKVQKDIRARSLRWTITDASLSPDQRFLVYSSMSPIVHIVNIGSAATESVANITEIHEGLDFSAGYDFEDDDYYYDAFGIFSVKFSNDGRELVAASSDASIYIYDLGANKLSMRFPAHMCDVNTVCFADESGHIIYSGSDDGLCKVLDRRCLINNEQASGVLVGHLEGVTFIDSRGDGRYLISNGKDQTIKLWDIRKMSSNLSHFLCSNPYKRNVRWDYRWMEYPVRLRNSRHPNDISLATYKGHSVLRTLIRCYFSPAYSTGQKYIYTGSADDSVYIYDLLTGAQVAKLDYHEGPVRDCSWHPNYPTLVSSSWDGTVAKWDFS 459
MSR+R FL E + + + LDH+I+QLT+++S PH+ M LP K P+S V+MLA RE N++GRGRFSS+D CH+L+RYLP NGPS++D M S YVSQFS DGSLFVAGFQESHIRIYNVD GWK+QKDIRA+SLRWTITD SLSPDQRFLVYSS+SPIVHIV++GS +SVAN+TEIHEGL+FS+ ++ D+Y FGIFSVKFS DGRELVA SD+SIY+YDL A +LS+R PAHM DVN VCFADE+GH+IYSGSDD LCKV DRRC EQA+GVL+GHLEG+T++D+RGDGRYLISNGKDQ IKLWDIRKMSSN+++ +P R+ WDYRWM YP +RN R+P+D+SL+TYKGHSVLRTLIRCYFSPA+STGQK+IY GS+D SVYIYD+++GA+VAKLDYH+ PVRDC+WHP YPTLVSS WDG +AKW+FS
Sbjct: 1 MSRSRRFLNERARGDGMKLIDEGGTSV-LDHEISQLTKIRSNPHERMRHLLPCKGKEPVSSVKMLAAREGNYTGRGRFSSSDCCHLLSRYLPTNGPSVVDQMRSCAYVSQFSTDGSLFVAGFQESHIRIYNVDQGWKIQKDIRAKSLRWTITDTSLSPDQRFLVYSSISPIVHIVDVGSGMKQSVANVTEIHEGLEFSSP-TYDHDNY---TFGIFSVKFSTDGRELVAGCSDSSIYVYDLEAKRLSLRIPAHMSDVNAVCFADETGHLIYSGSDDSLCKVWDRRCFGTREQAAGVLIGHLEGITYVDTRGDGRYLISNGKDQAIKLWDIRKMSSNINY----SPRPRSYDWDYRWMGYPEHVRNKRNPHDLSLSTYKGHSVLRTLIRCYFSPAHSTGQKFIYAGSSDSSVYIYDVVSGARVAKLDYHQEPVRDCNWHPYYPTLVSSGWDGIIAKWEFS 450
| Match Name | Stats | Description |
|---|---|---|
| A0A834LTV4 | E-Value: 0.000e+0, PID: 75.41 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7150... [more] |
| A0A5J5A979 | E-Value: 0.000e+0, PID: 74.42 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| M1A726 | E-Value: 0.000e+0, PID: 69.13 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A7N2LWV9 | E-Value: 0.000e+0, PID: 70.64 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A5N6RGG1 | E-Value: 0.000e+0, PID: 73.36 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A6A1VN90 | E-Value: 0.000e+0, PID: 74.42 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A3Q7F1N4 | E-Value: 0.000e+0, PID: 68.63 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A0V0IHW5 | E-Value: 0.000e+0, PID: 71.30 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A2R6P4H1 | E-Value: 0.000e+0, PID: 74.48 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
| A0A6N2BHB3 | E-Value: 0.000e+0, PID: 68.19 | LEC14B homolog {ECO:0000256|PIRNR:PIRNR038135}[more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |