Resource Type:
Polypeptide
Name:
XM_017367489.1
Identifier:
XM_017367489.1-protein
Sequence:
MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVPVE
FSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISE
GLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKL
EQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGK
RNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKV
DTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIE
PTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVP
DLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQ
SMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTS
MAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNM
GQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGM
GPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSG
QRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVG
KADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGML
FPGDMVVFKPQISNQQQQHQQLQPQQQHQQQLQHQQQLQQLQQQPLPQLQ
QQQQVPQLQQQIPQLQQQQQIPQLQQQQQIPQLQQQQQIPQLQQQQQQLP
QLQQQQQIPQMQPQQQMQQQQQVPQMQQHIPQMQQPSQQQQMAGTGMGQS
YVQGQGRQMASQGQVTSQGPPSMPGGGSYLS
Sequence Length:
881
Sequence Checksum:
8c635aba695d014b1c95de16098cf187
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367489.1, derives from mRNA, XM_017367489.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVZ0 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 1003.43 bits (2593), Expect = 0.000e+0
Identity = 517/714 (72.41%), Postives = 583/714 (81.65%), Query Frame = 0
HSP 2 Score: 57.3806 bits (137), Expect = 1.011e-5
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0
Match: A0A5B7AVZ0 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 1003.43 bits (2593), Expect = 0.000e+0
Identity = 517/714 (72.41%), Postives = 583/714 (81.65%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPI---IVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKP 710
MA+KQLIV VEGTAA+GP W +I +YL ++++FCG + T QKPS P +E SLV+FNA G+YSACLVQ+SGWT+DVD F QWLSAI F+GGGF+D AI+EGLAEALMM + +NG Q NVD QRHCILVAASNP+PLPTPV+RPQ+ LEQSEN E+Q ES + DAET+AK F Q SVSLSVI PKQLPKLKAIYNAGKRN R ADPP+DNVK+P+ LVLISENF+EARAALSR G+ SN SP+K+D + V PVS P TS+ S NGS+MNRQPI VGN+TP VK+EP+TVTSMVSGPA+PH+ SVPRA SQGVP+LQTSSP+SA QEMI + V DLKP V+G+SQPLRP GPAAANVSILN+LSQARQ AL+GGTSIGL SMGGT MAMHMSNMISSGMVSSVP QTVLSSGQSG+TS+ AG+G LAG QVA N+ GSF SA+S+L GN N GMSQPMGN QGGV+MGQSV +SQ N+ TQM Q+GIGMN NMISG+ SG+SS GTM+PTPGM Q Q G SLG+ NN+AANM +P Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKA RLIGMLFPGDMVVFKP
Sbjct: 1 MAKKQLIVAVEGTAALGPFWHSISADYLGDIVRTFCGNELTGQKPSAPNIELSLVMFNAHGSYSACLVQQSGWTKDVDIFLQWLSAIPFAGGGFNDAAIAEGLAEALMMFSTINGSQTQLNVDGQRHCILVAASNPYPLPTPVYRPQMQNLEQSENIETQTESCLYDAETVAKSFAQSSVSLSVICPKQLPKLKAIYNAGKRNTRVADPPVDNVKNPHFLVLISENFMEARAALSRPGVTSFASNQSPVKMDIAT--------VPPVSGPPSTSITSVNGSIMNRQPISVGTVGNMTPATVKVEPSTVTSMVSGPAFPHIPSVPRATSQGVPSLQTSSPISASQEMISNNDNVQDLKPTVSGMSQPLRPGGPAAANVSILNSLSQARQ-----ALSGGTSIGLPSMGGTSMAMHMSNMISSGMVSSVPAAQTVLSSGQSGITSV-----------AGSGTLAGTVQVAQNSAPGSFTSATSSLPGNPNPGMSQPMGNLQGGVSMGQSVSGMSQGNLPGTQMVQSGIGMNPNMISGLGPSGMSSGTGTMIPTPGMSQQVQQGMPSLGVNNNSAANMSLPQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAYRLIGMLFPGDMVVFKP 688
HSP 2 Score: 57.3806 bits (137), Expect = 1.011e-5
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0
Query: 842 MAGTGMGQSYVQGQGR-QMASQGQVTSQGPPSMPGGG 877
M GTGMGQ+YVQG R Q+ SQGQV+SQGPPSMPGGG
Sbjct: 753 MVGTGMGQAYVQGPSRSQLVSQGQVSSQGPPSMPGGG 789
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ANN6 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 540/768 (70.31%), Postives = 609/768 (79.30%), Query Frame = 0
Match: A0A5J5ANN6 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 540/768 (70.31%), Postives = 609/768 (79.30%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPI---IVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISNQQQQHQQLQPQQQHQQQLQHQQQLQQLQQQPLPQLQQQQQVPQLQQQIPQ 764
MA+KQL+V VEGTAA+GP WQ+I +YL ++++FCG + QKPS +E SLVVFNA G+YSACLVQRSGWT+DVD F QWLSA+ F+GGGF+D AI+EGLAEALMM + +NG Q NVD QRHCILVAASNP+PLPTPV+RPQ+ LEQ EN E+Q ES +SDAE++AK F Q SVSLSVI PKQLPKL+AIY+AGKRN RAADPP+DNVK+P+ LVLISENF+EARAALSR G+ SN SP+K+D SV P VS P TS+PS NGS+MNRQPI VGN+TP VK+EP+TVTSM SGPA+PH+SSVPRA SQGVP+LQTSSP+SA QEMI + V DLKP V+G+SQ LRP GPAAANVSILN+LSQARQVMNSAAL GGTSIGL SMGG MAMHMSNMISSGM SSVP QTVLSSGQSG+TS+A G+G LAG QVA N+ GSF SAS+N+S NSN G+SQPMGN QGG +MGQSV + Q NI TQM Q+GIGMN NMISG+ SG+SS GTM+PTPGM Q Q G SLG+ NN+AANM +P Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIS+QQQQ QQ QQ QQQ Q Q Q Q Q QQ+PQ
Sbjct: 1 MAKKQLVVAVEGTAALGPFWQSISGDYLVDIVRTFCGNELAGQKPSAANIELSLVVFNAHGSYSACLVQRSGWTKDVDIFLQWLSALPFAGGGFNDAAIAEGLAEALMMFSTINGSQTQLNVDGQRHCILVAASNPYPLPTPVYRPQMQNLEQGENIETQSESCLSDAESVAKSFSQCSVSLSVICPKQLPKLRAIYSAGKRNARAADPPVDNVKNPHFLVLISENFMEARAALSRPGVTNFASNPSPVKMDIASV------PT--VSGPPSTSIPSVNGSIMNRQPISVGTVGNITPATVKVEPSTVTSMPSGPAFPHISSVPRATSQGVPSLQTSSPISASQEMISNNDNVQDLKPTVSGMSQSLRPGGPAAANVSILNSLSQARQVMNSAALTGGTSIGLSSMGGASMAMHMSNMISSGMASSVPAAQTVLSSGQSGITSVA-----------GSGTLAGTVQVAQNSAPGSFTSASNNVSANSNPGISQPMGNLQGGASMGQSVSAMGQGNIPGTQMVQSGIGMNPNMISGLGPSGMSSGTGTMIPTPGMTQQVQGGMPSLGVNNNSAANMSLPQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQQQQQLQQQLQQQQHQQLQSQQHQQLQ---------------QQLPQ 732
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6BIP3 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 973.385 bits (2515), Expect = 0.000e+0
Identity = 503/717 (70.15%), Postives = 583/717 (81.31%), Query Frame = 0
Match: A0A6P6BIP3 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 973.385 bits (2515), Expect = 0.000e+0
Identity = 503/717 (70.15%), Postives = 583/717 (81.31%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL--NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISN 714
MA+KQLIV VEGTAAMGP+WQ ++++YLDK+I+ FC + T QK S VE SLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM P+ NG Q QNVD QRHCILVAASNP+PLPTPV+RPQI LEQSEN E+Q ESR+SDAET+AK F Q SVSLSVI PK L KLKAIY+AGKRNPRA DPPIDNV++P +LVLISENF+E RAALSR+G+ L +N SP+K+D SV V T P PT VPS NGS+M+RQP+ VGNV VK+EPTT+TSM +GPA+ H+ SVPRA SQ VPTLQTSSP + QE++ + + V +LKP V+G++QPLRP+ PAAANV+ILNNLSQAR VMNSAAL GGTSIGLQSMG + +AMHMSNMISSGM SSVPP QTV SSGQSGMTS + G+GAL G AQV N+ SF SA+SN++GNSN+G+SQPMGN QG V+MGQSVP +SQ N S QM Q+G+GM+ NM SG+ QS +SS G M+PTPGM Q Q G Q+LG+++++AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKA RLIGMLFPGDMVVFKPQIS+
Sbjct: 1 MADKQLIVAVEGTAAMGPYWQIVVSDYLDKIIRCFCSGELTGQKNSTSNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMF-PISPNGNQTQQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQSENVEAQTESRLSDAETVAKSFAQCSVSLSVICPKLLSKLKAIYSAGKRNPRAPDPPIDNVRNPQYLVLISENFMEGRAALSRSGVPSLAANQSPVKMDMASVTSV-TGPA-------PTPVPSVNGSIMSRQPVSVGNVPTATVKVEPTTITSMATGPAFQHIPSVPRAPSQAVPTLQTSSPSTTTQEVMTSGDNVQELKPSVSGMTQPLRPVPPAAANVNILNNLSQAR-VMNSAALTGGTSIGLQSMGQSPVAMHMSNMISSGMASSVPPAQTVFSSGQSGMTS-----------LTGSGALTGTAQVPPNSGLSSFPSATSNVAGNSNIGISQPMGNVQGAVSMGQSVPGMSQGNHSGAQMVQSGVGMSQNM-SGLGQSAVSSGTGIMIPTPGMSQQVQSGMQTLGVSHSSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAYRLIGMLFPGDMVVFKPQISS 693
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3J5Z7 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 967.992 bits (2501), Expect = 0.000e+0
Identity = 503/729 (69.00%), Postives = 584/729 (80.11%), Query Frame = 0
Match: A0A1R3J5Z7 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 967.992 bits (2501), Expect = 0.000e+0
Identity = 503/729 (69.00%), Postives = 584/729 (80.11%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCT-PLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASET-------------LAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISN 714
MAEKQLIV VEGTAAMGP+W T++++YLDK+I+ FC + QK S VE SLV FN G+Y ACLVQRSGWT+DVD F QWLSAI F+GGGF+D AI+EGL+EALMM + NG Q QNVD QRHCILV+ASNP+PLPTPV+RPQI LEQ+EN E+Q ESR+SDAET+AK F Q S+SLSVI PKQL KLKAI++AGKRNPRA DPP+DN ++P LVLISENF+E RAA SR G+ L SN SP+K+D SV V +V PPTSVPSANGS+M RQP+ VG+V VK+EPTT+TSM +GPAYPH+ SVPRA SQ VPTLQTSSP + QE+I + + V ++KP V+G++QPLRP+ P AANV+ILNNLSQAR VMNSAAL GG+SIGLQSMG T +AMHMSNMISSGM SSVPPTQTV S+GQSGMTS + G+GAL G AQV N+ SFASASSN++GNSN+G+SQPMGN QGGV+MGQSVP +SQ N+S QM Q+G+GM+ NM SG+ S +SS GTM+PTPGM Q Q QSLG++N++AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASET LAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIS+
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWHTVVSDYLDKIIRCFCSGELNGQKTSTSNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFAGGGFNDAAIAEGLSEALMMFSVASNGNQTQQNVDGQRHCILVSASNPYPLPTPVYRPQIQNLEQTENIEAQTESRLSDAETVAKSFGQCSISLSVICPKQLSKLKAIFSAGKRNPRAPDPPVDNSRNPQFLVLISENFMEGRAAFSRPGVPSLPSNQSPVKMDMASVTSV--------TVPPPTSVPSANGSMMARQPVSVGSVPTATVKVEPTTITSMGTGPAYPHIPSVPRAPSQAVPTLQTSSPSTTTQEVITSGDNVQEIKPSVSGMTQPLRPV-PPAANVNILNNLSQAR-VMNSAALTGGSSIGLQSMGQTPVAMHMSNMISSGMASSVPPTQTVFSNGQSGMTS-----------LTGSGALTGTAQVPPNSGLSSFASASSNMAGNSNIGISQPMGNVQGGVSMGQSVPGMSQGNVSGAQMVQSGVGMSQNM-SGLGPSTVSSGTGTMIPTPGMSQQVQSNMQSLGVSNSSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETFIEPEDFGFCSFRLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISS 705
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FWG9 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 954.125 bits (2465), Expect = 0.000e+0
Identity = 498/711 (70.04%), Postives = 568/711 (79.89%), Query Frame = 0
Match: A0A2I4FWG9 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 954.125 bits (2465), Expect = 0.000e+0
Identity = 498/711 (70.04%), Postives = 568/711 (79.89%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKP-SVPVEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL-NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFK 709
MA+K+LIVVVEGTAAMGP WQ+ +++YL+K+I+ FCG + QKP + E S+V F G+Y CLVQR+GWTRDVD F QWLSAI F+GGGF D AI+EGLAEALMM L NG QNVD QRHCILVAASNP+PLPTPV+RPQ+ LE++E+ E Q ESR SDAET+AK FPQ VSLSVI PKQLPKLKAIYNAGKRNPR DPP+DNVK+P LVLISENF+EARAALSR+GI L SN SP+ VD +P+ V+ PP S+P NGS+MNRQ I GN P VK+EP+TVTSM+SGP + H+ SV RAASQGVP+LQ+SSP S QEMI + V DLKP V+G++QPLRP+GPA ANV+ILNNLSQARQVMNSAAL GG+SIGLQSMG T ++MHMSNMISSGM +SVP Q VLSSGQS + SI+ G+G L GN QVA N GSF SA+SN SGNSNLG+SQPMGN QGGV+MGQS P ++Q N+S QMAQ+GIGMN NM+SG+ S +SS GTM+PTPGM Q Q G QSLG+ NN+A NMP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFL QLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFK
Sbjct: 1 MADKKLIVVVEGTAAMGPFWQSFVSDYLEKIIRCFCGNELNGQKPPTSHAELSVVTFYTHGSYCGCLVQRTGWTRDVDIFLQWLSAIPFAGGGFYDAAIAEGLAEALMMFPILQNGNPNQQNVDTQRHCILVAASNPYPLPTPVYRPQLQNLEKNESIEEQTESRTSDAETVAKSFPQCFVSLSVICPKQLPKLKAIYNAGKRNPRIGDPPVDNVKNPQFLVLISENFMEARAALSRSGITSLPSNQSPVNVDM--------APITSVTGPPPASIPLGNGSIMNRQAITAGNNPPATVKVEPSTVTSMLSGPGFSHIPSVARAASQGVPSLQSSSPSSTSQEMITNNDNVQDLKPIVSGVTQPLRPVGPAPANVNILNNLSQARQVMNSAALTGGSSIGLQSMGQTPISMHMSNMISSGMATSVPAAQNVLSSGQSAIPSIS-----------GSGPLTGNGQVAQNPGLGSFNSATSNASGNSNLGISQPMGNLQGGVSMGQSGPGMNQGNLSGVQMAQSGIGMNQNMMSGLGPSVVSSGTGTMIPTPGMPQQVQSGMQSLGVNNNSATNMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPATMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLSQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFK 690
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8M2I0 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 494/712 (69.38%), Postives = 575/712 (80.76%), Query Frame = 0
Match: A0A1U8M2I0 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 494/712 (69.38%), Postives = 575/712 (80.76%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL--NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFK 709
MAEKQLIV VEGTAAMGP+W ++++YLDK+I+ FC + T QK S VEFSLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM P+ NG Q QNVD QRHCILVAASNP+PLPTPV+RPQI LEQ EN+E+Q ESR+SDAET+A+ F Q SVSLSVI PKQL KLKAIY+AGK+NPRAADPP+DNVK+ LVLISENF+E RAALSR+G+ L +N SP+K+D SV V T P PP+SV NGS++ R P+ VGNV VK+EPTT+TSM +GPA+ HV SVPRA SQ +PTLQTSSPL+ E + + + + +LKP V+G++QP RP+ PAAANV+ILNNLSQAR VM+SAAL GGTSIGLQSM T +AMHMSNMISSGM SSVPP TVLSSGQ P MTS+ G+GAL G AQV N+ SF+SA+SN++GNSN+G+SQPMGN QG VN+GQSVP +SQ N S TQM Q+G+GM+ NM S + QS +SS NGTM+PTPGM Q Q G Q+LG++N++AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLP QTLLLSVSDKACRLIGMLFPGDMVVFK
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMF-PIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESRLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKQNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGLPSLATNQSPVKMDMASVTSV-TGP-------PPSSV---NGSMVGRLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRAPSQAIPTLQTSSPLTNTLEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQAR-VMSSAALTGGTSIGLQSMVQTPVAMHMSNMISSGMASSVPPAHTVLSSGQ-----------PTMTSLTGSGALTGAAQVLPNSGLSSFSSATSNVAGNSNIGISQPMGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNM-SALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGDMVVFK 685
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8L337 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 494/712 (69.38%), Postives = 575/712 (80.76%), Query Frame = 0
Match: A0A1U8L337 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 494/712 (69.38%), Postives = 575/712 (80.76%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL--NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFK 709
MAEKQLIV VEGTAAMGP+W ++++YLDK+I+ FC + T QK S VEFSLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM P+ NG Q QNVD QRHCILVAASNP+PLPTPV+RPQI LEQ EN+E+Q ESR+SDAET+A+ F Q SVSLSVI PKQL KLKAIY+AGK+NPRAADPP+DNVK+ LVLISENF+E RAALSR+G+ L +N SP+K+D SV V T P PP+SV NGS++ R P+ VGNV VK+EPTT+TSM +GPA+ HV SVPRA SQ +PTLQTSSPL+ E + + + + +LKP V+G++QP RP+ PAAANV+ILNNLSQAR VM+SAAL GGTSIGLQSM T +AMHMSNMISSGM SSVPP TVLSSGQ P MTS+ G+GAL G AQV N+ SF+SA+SN++GNSN+G+SQPMGN QG VN+GQSVP +SQ N S TQM Q+G+GM+ NM S + QS +SS NGTM+PTPGM Q Q G Q+LG++N++AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLP QTLLLSVSDKACRLIGMLFPGDMVVFK
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMF-PIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESRLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKQNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGLPSLATNQSPVKMDMASVTSV-TGP-------PPSSV---NGSMVGRLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRAPSQAIPTLQTSSPLTNTLEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQAR-VMSSAALTGGTSIGLQSMVQTPVAMHMSNMISSGMASSVPPAHTVLSSGQ-----------PTMTSLTGSGALTGAAQVLPNSGLSSFSSATSNVAGNSNIGISQPMGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNM-SALGQSTVSSGNGTMIPTPGMSQQVQSGMQALGVSNSSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGDMVVFK 685
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2ZVG6 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 952.584 bits (2461), Expect = 0.000e+0
Identity = 490/717 (68.34%), Postives = 575/717 (80.20%), Query Frame = 0
Match: A0A5D2ZVG6 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 952.584 bits (2461), Expect = 0.000e+0
Identity = 490/717 (68.34%), Postives = 575/717 (80.20%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMC-TPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVP-VVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISN 714
MAEKQLIV VEGTAAMGP+WQ IL++YL+K+I+ FC + QK + VE SLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM NG Q HQ D QRHCILVAASNP+PLPTPV+RPQ LEQSEN ESQ ESR+SDAET+AK FPQ SVSLSVI PKQL KLKAIY+AGKRNPRA+DPP+DNV++P LVLISENF+E AALSR+G+ L N SP+K+D SV V + + PTSVPS NGS+M+RQP+ VGNV VK+EP T+TSM +GPA+PH+ SVPRA Q VPTLQTSSPL+ +E++ +++ V ++KP V G++QPLRP+ PAAANV+ILNNLSQAR VMNSAAL+GGTSIGLQSMG T +AMHMSNMISSGM SSVP QTV SSGQS MTS + G+GA+ G +V N+N SFASA+SN++GNSN+G+SQPM N QG V+MGQSVP VSQ N S Q+ Q G+ M+ +M SG+ S +SS GT++PTPG+ Q Q G Q++G+ NN+AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLA++WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTL+LSVSDKA RLIGMLFPGDMVVFKPQIS+
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWQIILSDYLEKIIRCFCSNEFAGQKNTTSNVELSLVAFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAANGNQTHQIADGQRHCILVAASNPYPLPTPVYRPQTQNLEQSENMESQTESRLSDAETVAKSFPQCSVSLSVICPKQLSKLKAIYSAGKRNPRASDPPVDNVRNPQFLVLISENFMEGCAALSRSGVPSLAPNQSPVKMDMASVTSV--------AGTSPTSVPSVNGSIMSRQPVSVGNVPTATVKVEPATITSMANGPAFPHIPSVPRAPFQAVPTLQTSSPLTTTEEVMRSSDNVQEIKPSVGGMTQPLRPVPPAAANVNILNNLSQAR-VMNSAALSGGTSIGLQSMGQTPVAMHMSNMISSGMTSSVPLAQTVFSSGQSAMTS-----------LPGSGAVTGTTRVPPNSNLNSFASATSNVAGNSNIGISQPMCNVQGAVSMGQSVPGSVSQGNHSGAQLVQTGVAMSQSM-SGLGPSTVSSGTGTLIPTPGLSQQVQSGMQTIGVNNNSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLASDWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLMLSVSDKAYRLIGMLFPGDMVVFKPQISS 694
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1BMT9 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 951.429 bits (2458), Expect = 0.000e+0
Identity = 499/717 (69.60%), Postives = 575/717 (80.20%), Query Frame = 0
Match: A0A6J1BMT9 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 951.429 bits (2458), Expect = 0.000e+0
Identity = 499/717 (69.60%), Postives = 575/717 (80.20%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMCTPL--NGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISN 714
MAEKQLIV VEGTAAMGP+WQT++++YLDK+I+ F + T QK S VE +LV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM P+ NG Q QNVD QRHCILVAASNP+PLPTPV+RPQ LEQ+EN E+Q ESR+SDAET+AK F Q SVSLSVI PKQL KLK IY+AGKRNPRA DPP+DNV++P LVLISENF+E RAALSR G+ L N SP+K+D SV V T P PPTSVPS NGS+M+RQP VGNV VK+EPTT+TSM +GPA+ H+ SVPRA S VPTLQTSSP + QE++ + + V +LKP V+G++QPLRP+ PA NV+ILNNLSQAR VMNSAAL GGTSIGL SMG T +AMHMSNMISSGM SSVPP QTV SSGQSGMTS + G+GAL G QV N+ SFAS +SN++GNSN+G+SQP+GN QGGV+MG SVP +SQ N S QM Q+G+GM+ NM SG+ S +SS GTM+PTPGM Q Q G Q+LG++N++AANMP+ S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIS+
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWQTVVSDYLDKIIRCFNSSELTGQKTSTSNVELALVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMF-PIAPNGNQTQQNVDGQRHCILVAASNPYPLPTPVYRPQSQNLEQTENIEAQTESRLSDAETVAKSFAQCSVSLSVICPKQLSKLKTIYSAGKRNPRAPDPPVDNVRNPPFLVLISENFMEGRAALSRPGVPSLTPNQSPVKMDMASVTSV-TGP-------PPTSVPSVNGSMMSRQPASVGNVPTATVKVEPTTITSMGTGPAFSHIPSVPRAPSPAVPTLQTSSPSTTTQEVMNSGDNVQELKPSVSGMTQPLRPVPPA--NVNILNNLSQAR-VMNSAALTGGTSIGLPSMGQTPVAMHMSNMISSGMASSVPPAQTVFSSGQSGMTS-----------LTGSGALTGTVQVPPNSGLSSFASTTSNVTGNSNIGISQPLGNVQGGVSMGPSVPGMSQGNHSGAQMVQSGVGMSQNM-SGLGPSTVSSGTGTMIPTPGMSQQVQSGMQTLGVSNSSAANMPLSQPTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISS 691
BLAST of XM_017367489.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0B0PNK0 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 950.273 bits (2455), Expect = 0.000e+0
Identity = 489/717 (68.20%), Postives = 574/717 (80.06%), Query Frame = 0
Match: A0A0B0PNK0 (Mediator of RNA polymerase II transcription subunit 25 {ECO:0000256|ARBA:ARBA00019694})
HSP 1 Score: 950.273 bits (2455), Expect = 0.000e+0
Identity = 489/717 (68.20%), Postives = 574/717 (80.06%), Query Frame = 0
Query: 1 MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVP-VEFSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISEGLAEALMMC-TPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKLEQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGKRNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKVDTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIEPTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVPDLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQSMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTSMAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNMGQSVP-VVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGMGPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISN 714
MAEKQLIV VEGTAAMGP+WQ IL++YL+K+I+ FC + QK + VE SLV FN G+Y ACLVQRSGWT+DVD F QWLSAI FSGGGF+D AI+EGL+EALMM NG Q HQ D QRHCILVAASNP+PLPTPV+RPQ LEQSEN ESQ ESR+SDAET+AK FPQ SVSLSVI PKQL KLKAIY+AGKRNPRA+DPP+DNV++P LVLISENF+E AALSR+G+ L N SP+K+D SV V + + PTSVPS NGS+M+RQP+ VGNV VK+EP T+TSM +GPA+PH+ SVPRA Q VPTLQTSSPL+ +E++ +++ V ++KP V G++QPLRP+ PAAANV+ILNNLSQAR VMNSAAL+GGTSIGLQSMG T +AMHMSNMISSGM SSVP QTV SSGQS MTS + G+GA+ G QV N+N SFASA+SN++GNSN+G+SQPM N QG V+MGQSVP +S N S Q+ Q G+ M+ +M SG+ S +SS GT++PTPG+ Q Q G Q++G+ NN+AA+MP+ Q S+A+QSA QSKYV+VWEGNLSGQRQGQPVFITRLEGYRSASASETLA++WP TMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTL+LSVSDKA RLIGMLFPGDMVVFKPQIS+
Sbjct: 1 MAEKQLIVAVEGTAAMGPYWQIILSDYLEKIIRCFCSNEFAGQKNTTSNVELSLVAFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAANGNQTHQIADGQRHCILVAASNPYPLPTPVYRPQTQNLEQSENMESQTESRLSDAETVAKSFPQCSVSLSVICPKQLSKLKAIYSAGKRNPRASDPPVDNVRNPQFLVLISENFMEGCAALSRSGVPSLAPNQSPVKMDMASVTSV--------AGTSPTSVPSVNGSIMSRQPVSVGNVPTATVKVEPATITSMANGPAFPHIPSVPRAPFQAVPTLQTSSPLTTTEEVMRSSDNVQEIKPSVGGMTQPLRPVPPAAANVNILNNLSQAR-VMNSAALSGGTSIGLQSMGQTPVAMHMSNMISSGMTSSVPLAQTVFSSGQSAMTS-----------LPGSGAVTGTTQVPPNSNLNSFASATSNVAGNSNIGISQPMCNVQGAVSMGQSVPGSMSHGNHSGAQLVQTGVAMSQSM-SGLGPSTVSSGTGTLIPTPGLSQQVQSGMQTIGVNNNSAASMPLSQQTSSALQSA--QSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLASDWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLMLSVSDKAYRLIGMLFPGDMVVFKPQISS 694
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AVZ0 | E-Value: 1.011e-5, PID: 72.41 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A5J5ANN6 | E-Value: 0.000e+0, PID: 70.31 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A6P6BIP3 | E-Value: 0.000e+0, PID: 70.15 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A1R3J5Z7 | E-Value: 0.000e+0, PID: 69.00 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A2I4FWG9 | E-Value: 0.000e+0, PID: 70.04 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A1U8M2I0 | E-Value: 0.000e+0, PID: 69.38 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A1U8L337 | E-Value: 0.000e+0, PID: 69.38 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A5D2ZVG6 | E-Value: 0.000e+0, PID: 68.34 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A6J1BMT9 | E-Value: 0.000e+0, PID: 69.60 | Mediator of RNA polymerase II transcription subuni... [more] |
| A0A0B0PNK0 | E-Value: 0.000e+0, PID: 68.20 | Mediator of RNA polymerase II transcription subuni... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |