MRSSLEKATWSISNRCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIV
AKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFE
MHLKRNIESPVAVAPPVAPAPVPTAPKTESTPASSAPSPTKASPVKTNPF
TNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKE
GDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAV
LPSFHGIR
| Relationships |
|---|
| The polypeptide, XM_017372776.1, derives from mRNA, XM_017372776.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5B6ZXC2 (Lipoyl-binding domain-containing protein {ECO:0000259|Pfam:PF00364})
HSP 1 Score: 346.665 bits (888), Expect = 1.845e-118
Identity = 176/259 (67.95%), Postives = 209/259 (80.69%), Query Frame = 0
Query: 5 LEKATWSISNRCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCS---QGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNI---ESPVAVAPPVAPAPVPTAPKTESTPASSAPSPTKASPVKTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGI 257
++ A+W S++ IQGLT G VSSP K E +++CVKTS++A+ +KS+ S QGS+E+ R TFP GFEAL+ EVCDET++AELKLKIGDFEMH+KRNI ++P+AV P P +PT P E+ PA+ SP K SP K +PFTN+ +EKS KLAALEASGASGYV+V+SPTVGSFR+GRTLKGKKQPP CKEGD+IKEGQVIGFLDQFGTELPVKSDVAGEVLKLLF+DGEAVGYGDPLIAVLPSFHGI
Sbjct: 32 VQNASWRTSSKSHIQGLTFGGKLVSSPKKWEGTLVSCVKTSETAVTSKSDGSSDGRPQGSLERNSLRNVTFPNGFEALILEVCDETEVAELKLKIGDFEMHMKRNIGVTKAPMAVISPTTPPAIPTKPMIEAAPAAPLSSPPKPSPEKISPFTNVSLEKSAKLAALEASGASGYVIVSSPTVGSFRRGRTLKGKKQPPICKEGDIIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFNDGEAVGYGDPLIAVLPSFHGI 290
Match: A0A5J5BA66 (Lipoyl-binding domain-containing protein {ECO:0000259|Pfam:PF00364})
HSP 1 Score: 334.724 bits (857), Expect = 9.771e-114
Identity = 169/260 (65.00%), Postives = 198/260 (76.15%), Query Frame = 0
Query: 5 LEKATWSISNRCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCS---QGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNI---ESPVAVAPPVAPAPVPTAPKTESTPASSAPSPTKASPVKTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGIR 258
+ TW S + QGL G SSP K E +++CVKTS++A+ K + S QGS+E+ R A FP GFEALV EVCDET++AELKLK+GDFEMHLKRN+ ++P+ V V P P+ ES PA+ SP K S K NPFTN+PVEKS KLAALEASG+SGYVLV+SP VGSFR+GRTLKGKKQPP CKEGD+IKEGQ+IGFLDQFGTELPVKSDV+GEVLKLLF+DGEAVGYGDPLIAVLPSFHGI+
Sbjct: 29 VHNGTWPTSQKSHFQGLAFGGKLASSPKKWEGTLVSCVKTSETAVTGKPDVSLGGHPQGSLERNSLRSAIFPNGFEALVLEVCDETEVAELKLKVGDFEMHLKRNVGATKAPMPVISSVTPPPILAKSTIESAPAALPSSPPKTSTEKINPFTNVPVEKSAKLAALEASGSSGYVLVSSPIVGSFRRGRTLKGKKQPPVCKEGDVIKEGQMIGFLDQFGTELPVKSDVSGEVLKLLFEDGEAVGYGDPLIAVLPSFHGIQ 288
Match: B9HHW2 (Lipoyl-binding domain-containing protein {ECO:0000259|Pfam:PF00364})
HSP 1 Score: 323.553 bits (828), Expect = 9.996e-110
Identity = 170/261 (65.13%), Postives = 200/261 (76.63%), Query Frame = 0
Query: 1 MRSSLEKATWSISNRCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNIESPVAVAPPVAPAPVPTAPKTESTPASSAPSPTKASPV---KTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGIR 258
M SS+ ++ + QGLTVGR +S PSKR LR+++CVKTS++ +AKS+D QGS+EK R ATFP GFEALV EVCDET+IAELKLK+GDFEMHLKRN+ + A AP ++ P+P P +++ S KT PFTN+ KS KLAALEASGASGYVLVASPTVGSFR+ RT+KGKKQPP CKEGD+IKEGQVIG+LDQFGTELPVKSDVAGEVLKLLF+DG+AVGYGDPLIAVLPSFHGI
Sbjct: 1 MESSVLLRSFQCNLLAQGQGLTVGRKLISYPSKRNLRLVSCVKTSEAPAIAKSDDGNKQGSLEKNSLRNATFPNGFEALVLEVCDETEIAELKLKVGDFEMHLKRNVGA--AKAPLISSTPLPPIPTPPMEVSAAVSPSPSPSKSSVEKTTPFTNVSFGKSSKLAALEASGASGYVLVASPTVGSFRRNRTVKGKKQPPICKEGDVIKEGQVIGYLDQFGTELPVKSDVAGEVLKLLFNDGDAVGYGDPLIAVLPSFHGIN 259
Match: A0A6M2E6T2 (Lipoyl-binding domain-containing protein {ECO:0000259|Pfam:PF00364})
HSP 1 Score: 321.242 bits (822), Expect = 7.159e-109
Identity = 170/259 (65.64%), Postives = 195/259 (75.29%), Query Frame = 0
Query: 1 MRSSLEKATWSISNRCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNIESPVAVAPPVAPAPVPTAPKTESTPASSAPSPTKASPV-KTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGIR 258
M SS+ ++ + QGLTVGR +S PSKR LR++ CVKTS++ +AKS+D QGS+EK R A FP GFEALV EVCDET+IAELKLK+GDFEMHLKRN+ + A P P P E + A S S V K+ PFTN+ KS KLAALEASGASGYVLVASPTVGSFR+ RT+KGKKQPP CKEGD+IKEGQVIG+LDQFGTELPVKSDVAGEVLKLLF+DG+AVGYGDPLIAVLPSFHGI
Sbjct: 1 MESSVLLRSFQCNLLAQGQGLTVGRKLISYPSKRNLRLVPCVKTSEAPAIAKSDDGNKQGSLEKNSLRNAIFPNGFEALVLEVCDETEIAELKLKVGDFEMHLKRNVGAAKAPLISSTPLPPIPTPPMEVSAAVSPSQSPSKSSVEKSTPFTNVSFGKSSKLAALEASGASGYVLVASPTVGSFRRNRTVKGKKQPPICKEGDVIKEGQVIGYLDQFGTELPVKSDVAGEVLKLLFNDGDAVGYGDPLIAVLPSFHGIN 259
Match: A0A5B6ZVS2 (Lipoyl-binding domain-containing protein {ECO:0000259|Pfam:PF00364})
HSP 1 Score: 319.701 bits (818), Expect = 6.857e-108
Identity = 165/253 (65.22%), Postives = 196/253 (77.47%), Query Frame = 0
Query: 5 LEKATWSISNRCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNIESPVAVAPPVAPAPVPTAPKTESTPASSAPSPTKASPVKTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGI 257
L T+ S++ IQG T G VSSP K E +++C+KT+++A+ KS D SQG +E+ R ATFP GFEALV EVCDET++AELKLK+GDFEMHLKRN+ + A P ++ P P P + ++ A P+ S K NPFTN+PVEKS KL ALEASG+SGYV+V+S VGSFR+GRTLKGKKQPP CKEGD+IKEGQVIGFLDQFGTELPVKSDV+GEVLKLLFDDGEAVGYGDPLIAVLPSFHGI
Sbjct: 29 LHNGTFPTSSKSHIQGFTFGGKLVSSPKKWEGTLVSCMKTAETAVTTKSNDGHSQGLLERNSLRCATFPNGFEALVLEVCDETEVAELKLKVGDFEMHLKRNVGAMKAPMPVISSTPPPPIPTKPTIESAPAAPPSSPSTEKINPFTNVPVEKSAKLTALEASGSSGYVIVSSSIVGSFRRGRTLKGKKQPPICKEGDVIKEGQVIGFLDQFGTELPVKSDVSGEVLKLLFDDGEAVGYGDPLIAVLPSFHGI 281
Match: A0A4V6A9L4 ((Biotin/lipoyl attachment domain-containing family protein {ECO:0000313|EMBL:TKS07656.1}))
HSP 1 Score: 317.775 bits (813), Expect = 1.513e-107
Identity = 167/261 (63.98%), Postives = 198/261 (75.86%), Query Frame = 0
Query: 1 MRSSLEKATWSISNRCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNIESPVAVAPPVAPAPVPTAPKTESTPASSAPSPTKASPV---KTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGIR 258
M SS+ ++ + Q LTVGR +S PSKR LR+++CVKTS++ +AKS+D QGS+E R ATFP GFEALV EVCDET+IAELKLK+GDFEMHLKRN+ + A AP ++ P+P P +++ S K+ PFTN+ KS KLAALEASGASGYVLVASPTVGSFR+ RT+KGKKQPP CKEGD+IKEGQVIG+LDQFGTELPVKSDVAGEVLKLLF+DG+AVGYGDPLIAVLPSFHGI
Sbjct: 1 MESSVLLRSFQCNLLAQGQSLTVGRKLISYPSKRNLRLVSCVKTSEAPAIAKSDDGNKQGSLENNSLRNATFPNGFEALVLEVCDETEIAELKLKVGDFEMHLKRNVGA--AKAPLISSTPLPPIPTPPMEVSAAVSPSPSPSKSSVEKSTPFTNVSFGKSSKLAALEASGASGYVLVASPTVGSFRRNRTVKGKKQPPICKEGDVIKEGQVIGYLDQFGTELPVKSDVAGEVLKLLFNDGDAVGYGDPLIAVLPSFHGIN 259
Match: A0A7J7I253 (Lipoyl-binding domain-containing protein {ECO:0000259|Pfam:PF00364})
HSP 1 Score: 317.775 bits (813), Expect = 5.327e-107
Identity = 175/258 (67.83%), Postives = 204/258 (79.07%), Query Frame = 0
Query: 4 SLEKATWSISNRCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNI---ESPVAVAPPVAPAPVPTAPKTESTPASSAPSPT-KASPVKTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGI 257
++ ATW +R IQGLT G S P +RE V++C+K S++ + AKS+DS Q +EK R ATFP GFE LV EVCDET+IAELKLK+GDFEMHLKRNI +P+ V P P P+P+ P ES A+S P+P K+S K +PFTN+ VEKS KLAALEASGASGYVL++SPTVGSFR+GRTLKGKKQPP CKEGD+IKEGQVIGF+DQFGTELPVKSDVAGEVLKLLF+DGEAVGYGDPLIAVLPSFHGI
Sbjct: 34 AVHNATWPTLSRSHIQGLTFGG---SIPIRREGMVVSCIKASETVVAAKSDDSQPQRPLEKNGQRRATFPNGFEELVLEVCDETEIAELKLKVGDFEMHLKRNIGAAHAPLPVVSPTTPPPIPSKPMIESA-AASPPTPLPKSSTEKISPFTNVSVEKSTKLAALEASGASGYVLMSSPTVGSFRRGRTLKGKKQPPICKEGDVIKEGQVIGFVDQFGTELPVKSDVAGEVLKLLFNDGEAVGYGDPLIAVLPSFHGI 287
Match: A0A4U5MYU3 ((Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like {ECO:0000313|EMBL:TKR74553.1}))
HSP 1 Score: 314.694 bits (805), Expect = 3.061e-106
Identity = 173/258 (67.05%), Postives = 206/258 (79.84%), Query Frame = 0
Query: 5 LEKATWSISNRCPI--QGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNI---ESPVAVAPPVAPAPVPTAPKTESTPASSAPSPTKASPVKTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGI 257
+E + S +C + QGLTVGR +S P KR R+++CVKTS++ +AK++DS QGS+EK R ATFP GFEAL+ +VCDET++AELKLK+GDFEMHLKR+I +SP + P+ P P+PT P S S APSP+K+S KT PFTNI KS K+AALEASGASGYVLVASPTVGSFR+ RT+KGKKQPP CKEGD+IKEGQVIG+LDQFGTELPVKSDVAGEVLKLLF+DG+AVGYGDPLIAVLPSFH I
Sbjct: 1 MESSLLLRSFQCNLHTQGLTVGRKLISYPVKRNRRLVSCVKTSEAPTIAKTDDSNKQGSLEKNSQRNATFPNGFEALILDVCDETEVAELKLKVGDFEMHLKRDIGVAKSPFTSSTPLPPPPIPTPPMELSAAVSPAPSPSKSSVEKTTPFTNISFRKSSKMAALEASGASGYVLVASPTVGSFRRNRTVKGKKQPPICKEGDVIKEGQVIGYLDQFGTELPVKSDVAGEVLKLLFNDGDAVGYGDPLIAVLPSFHVI 258
Match: A0A6P6VQT1 ((uncharacterized protein LOC113725329 isoform X4 {ECO:0000313|RefSeq:XP_027104252.1}) (uncharacterized protein LOC113730300 isoform X4 {ECO:0000313|RefSeq:XP_027110717.1}))
HSP 1 Score: 314.309 bits (804), Expect = 6.085e-106
Identity = 160/247 (64.78%), Postives = 191/247 (77.33%), Query Frame = 0
Query: 15 RCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNIESPVAVAP---PVAPAPVPTAPKTESTPASSAPSPTKASPVKTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGIR 258
+C IQGL +SS SK +++CVKTS+ + AKS+DS + S K R ATFP GF+AL+ EVCD+T+IAEL++K+GDFEMHLKRNI+ P+A AP P P+P+ P +S P + K S K +PFTN+P EKS KLAALEASGASGYVL ASPTVGSFR+GRTLKGK+QPP KEGDLIKEGQ IG+LDQFGTELPVKSDVAGEVLK+L++DGEAVGYGDPLIAVLPSFHGI+
Sbjct: 24 KCHIQGLAYNGKLISSTSKMGGVIVSCVKTSEVPVTAKSDDSSQKESGPKNSIRRATFPNGFKALLTEVCDDTEIAELRVKVGDFEMHLKRNIQPPIAPAPVESPTVAPPIPSEPMNQSVPPPAP---PKPSTEKMSPFTNVPAEKSAKLAALEASGASGYVLAASPTVGSFRRGRTLKGKRQPPILKEGDLIKEGQTIGYLDQFGTELPVKSDVAGEVLKILYNDGEAVGYGDPLIAVLPSFHGIK 267
Match: A0A6P6W6T3 ((uncharacterized protein LOC113725329 isoform X2 {ECO:0000313|RefSeq:XP_027104250.1}) (uncharacterized protein LOC113730300 isoform X2 {ECO:0000313|RefSeq:XP_027110715.1}))
HSP 1 Score: 313.538 bits (802), Expect = 1.484e-105
Identity = 160/247 (64.78%), Postives = 191/247 (77.33%), Query Frame = 0
Query: 15 RCPIQGLTVGRNFVSSPSKRELRVIACVKTSDSAIVAKSEDSCSQGSVEKTPFRGATFPGGFEALVKEVCDETQIAELKLKIGDFEMHLKRNIESPVAVAP---PVAPAPVPTAPKTESTPASSAPSPTKASPVKTNPFTNIPVEKSRKLAALEASGASGYVLVASPTVGSFRKGRTLKGKKQPPSCKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGEAVGYGDPLIAVLPSFHGIR 258
+C IQGL +SS SK +++CVKTS+ + AKS+DS + S K R ATFP GF+AL+ EVCD+T+IAEL++K+GDFEMHLKRNI+ P+A AP P P+P+ P +S P + K S K +PFTN+P EKS KLAALEASGASGYVL ASPTVGSFR+GRTLKGK+QPP KEGDLIKEGQ IG+LDQFGTELPVKSDVAGEVLK+L++DGEAVGYGDPLIAVLPSFHGI+
Sbjct: 39 KCHIQGLAYNGKLISSTSKMGGVIVSCVKTSEVPVTAKSDDSSQKESGPKNSIRRATFPNGFKALLTEVCDDTEIAELRVKVGDFEMHLKRNIQPPIAPAPVESPTVAPPIPSEPMNQSVPPPAP---PKPSTEKMSPFTNVPAEKSAKLAALEASGASGYVLAASPTVGSFRRGRTLKGKRQPPILKEGDLIKEGQTIGYLDQFGTELPVKSDVAGEVLKILYNDGEAVGYGDPLIAVLPSFHGIK 282
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZXC2 | E-Value: 1.845e-118, PID: 67.95 | Lipoyl-binding domain-containing protein {ECO:0000... [more] |
| A0A5J5BA66 | E-Value: 9.771e-114, PID: 65.00 | Lipoyl-binding domain-containing protein {ECO:0000... [more] |
| B9HHW2 | E-Value: 9.996e-110, PID: 65.13 | Lipoyl-binding domain-containing protein {ECO:0000... [more] |
| A0A6M2E6T2 | E-Value: 7.159e-109, PID: 65.64 | Lipoyl-binding domain-containing protein {ECO:0000... [more] |
| A0A5B6ZVS2 | E-Value: 6.857e-108, PID: 65.22 | Lipoyl-binding domain-containing protein {ECO:0000... [more] |
| A0A4V6A9L4 | E-Value: 1.513e-107, PID: 63.98 | (Biotin/lipoyl attachment domain-containing family... [more] |
| A0A7J7I253 | E-Value: 5.327e-107, PID: 67.83 | Lipoyl-binding domain-containing protein {ECO:0000... [more] |
| A0A4U5MYU3 | E-Value: 3.061e-106, PID: 67.05 | (Biotin carboxyl carrier protein of acetyl-CoA car... [more] |
| A0A6P6VQT1 | E-Value: 6.085e-106, PID: 64.78 | (uncharacterized protein LOC113725329 isoform X4 {... [more] |
| A0A6P6W6T3 | E-Value: 1.484e-105, PID: 64.78 | (uncharacterized protein LOC113725329 isoform X2 {... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |