Resource Type:
Genetic Marker
Name:
MK000049 NCED2
Identifier:
MK000049_NCED2
Organism:
Marker Type:
STS-Sanger
Publication:
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000049 NCED2, is adjacent to primer, NCED2-F2. |
| The genetic_marker, MK000049 NCED2, is adjacent to primer, NCED2?-R1. |
| The genetic_marker, MK000049 NCED2, is located in gene, DCAR_017563. |
| The genetic_marker, MK000049 NCED2, is located in gene, LOC108220601. |
| The marker_locus, NCED2, is an instance of genetic_marker, MK000049 NCED2. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2002 B493×QAL Ver2 QAL | LG02 | 74.9 | NCED2 | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG02 | 51 | NCED2 | MapViewer |
| 2011 FISH | CHR05 | 8.539 | NCED2 | MapViewer |
| 2011 B493×QAL QAL | LG05 | 63.9 | NCED2 | MapViewer |
| 2011 FISH | CHR05 | 10.079 | NCED2 | MapViewer |
| 2011 B493×QAL B493 | LG05 | 32.4 | NCED2 | MapViewer |
| 2002 B493×QAL Ver2 B493 | LG02 | 70.1 | NCED2 | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG02 | 100.8 | NCED2 | MapViewer |
Synonyms:
- MK000049
- C098O13
Sequence Coordinates:
DCARv2_Chr5:20939616..20940199+
View location in JBrowse:
Sequence:
ATCACTCCACCTACAATAACACCACTCTAGTCTCTCTTATTCTCTCTGTC
TTTTCACACTCAAAACATAAACACACACACATACCATGGCCACTTATGCT
ACTTGGGCTAAACCAAAAATTCTAACTTCTTGTCCACAAAGAGAAGTAAA
ATCACAAAAGGCCTACAGAAAAAACAATGTAAATTGTAGTTTGCAGTCTC
CTTCTATACTTCATTTCCCCAAACAATCACCACACATATATCAAACACCT
TGTGTTCCAACCACCATTGCACAGCCAAAACATCAAGATTCTTCGTCGAG
TAATCAATGGAATTTCCTACAGAAAGCAGCTTCGATGGCCTTAGATGCCG
TTGAAAATGTGATTGCTGCGCGAGAAAAAGAACACCCTCTGCCAAAAACA
GCTGACCCTCAAGTCCAAATTGCCGGAAACTTCGCTCCTGTCCCAGAACA
GCCTGTTCGCCACCGCCTCCCAGTCACCGGAAAGATACCTGAATGTATTT
CCGGAGTCTATGTTCGAAACGGGGCCAACCCCCATTTGGAACCCACTGCA
GGGCATCATTTTTTCGACGGAGATGGGATGGTTCATGCTGTCCAATTCAA
AGAGGGGGCTGCTAGCTACGCTTGCAGGTTCACTGAAACAGAAAGACTCA
TCCAGGAGCGTAATTTGGGGAAGCCTGTTTTCCCCAAAGCCATTGGGGAG
CTTCATGGCCACTCAGGGATTGCTAGGCTTGCTTTGTTTTACGCTCGCGG
CTTGTTTGGCCTTGTTGATCATTCTCAGGGCACTGGCGTGGCCAACGCGG
GCTTGGTTTATTTTAATAACCGATTGTTAGCTATGTCTGAAGATGACTTG
CCTTATCATGTGGAGATCACTTCTTCGGGTGATCTTAAAACTGTTGGGAG
GTACAATTTTGATGGCCAGTTGGATACCACGATGATTGCTCACCCCAAAA
TTGATCCGGATACTAAGGAGCTCATTGCTTTGAGTTATAATGTGATTCAG
AAGCCTTATTTGAAGTACTTTCGGGTTTCACCTGATGGAGTCAAGTCGGA
TGATGTTGATATTGAATTGGCTGACCCGACTATGATGCATGATTTTGCAA
TTACGGAGAATTTTGTGGTCATTCCTGACCAGCAAGTGGTGTTCAAGATT
TCGGAAATGATACAAGGTGGATCACCAGTGGTGTATGACAAGAATAAAGT
GTCGCGTTTTGGTGTTTTGGACAAGTATGCGAAAGATGGGTCTGGAATTA
AGTGGGTTGAGGTTCCGGATTGTTTCTGTTTTCATTTGTGGAATGCTTGG
GAAGATGAAGAAAGTGATGAAATTGTGGTGATTGGCTCTTGTATGACTCC
AGCTGATTCTATTTTTAATGAATGTGATGAAGGATTACAGAGTGTTCTGT
CTGAAATTAGGCTCAATTTGAAGACAGGAAAATCAACACGAAAGCCAATT
ATGTCATCGGAGGATCAAGTGAATCTGGAGGCAGGGATGGTGAACAAAAA
CAAGCTGGGAAGAAAAACCCAGTTTGCTTATTTGGCCATTGCTGAGCCTT
GGCCTAAAGTTTCTGGTTTTGCGAAAGTTGATCTCTTCACTGGTCAAGTC
CAGAAGTTCTTTTACGGGGATCATAAGTATGGAGGTGAGCCTCTTTTTCT
CCCAAAAAACCCGAATTCTGAGAATGAAGATGATGGCTATATATTAGCAT
TTGTTCACGACGAGAAGGCATGGAAGTCGGAGCTTCAGATCGTTAATGCC
ATGACTCTAGAGTTAGAGGCCACGGTCCAGCTTCCGTCCAGGGTGCCATA
TGGATTCCATGGCACATTCATTAGTGCAAAAGATTTAGAAAGTCAGGCCT
GATACTCAATTTGGCCTGATCAATAGTTTGCTAGTTTGATTGTTATTGCA
GCCGAGAATTATCAGAGGGATTGATCATACGTCCCCGAAATTCCCCGAGC
TGTTTAAACTACGGACCTTTTGTTGGTTGTCACAAAAGAGTTCGGATAGT
ATCATTTATCTTGTTTATATGTAATGATTTCATGGGAAGATTTGAAGC
Sequences:
>MK000049_NCED2 ID=MK000049_NCED2; Name=MK000049 NCED2; organism=Daucus carota; type=genetic_marker
ATCACTCCACCTACAATAACACCACTCTAGTCTCTCTTATTCTCTCTGTC
TTTTCACACTCAAAACATAAACACACACACATACCATGGCCACTTATGCT
ACTTGGGCTAAACCAAAAATTCTAACTTCTTGTCCACAAAGAGAAGTAAA
ATCACAAAAGGCCTACAGAAAAAACAATGTAAATTGTAGTTTGCAGTCTC
CTTCTATACTTCATTTCCCCAAACAATCACCACACATATATCAAACACCT
TGTGTTCCAACCACCATTGCACAGCCAAAACATCAAGATTCTTCGTCGAG
TAATCAATGGAATTTCCTACAGAAAGCAGCTTCGATGGCCTTAGATGCCG
TTGAAAATGTGATTGCTGCGCGAGAAAAAGAACACCCTCTGCCAAAAACA
GCTGACCCTCAAGTCCAAATTGCCGGAAACTTCGCTCCTGTCCCAGAACA
GCCTGTTCGCCACCGCCTCCCAGTCACCGGAAAGATACCTGAATGTATTT
CCGGAGTCTATGTTCGAAACGGGGCCAACCCCCATTTGGAACCCACTGCA
GGGCATCATTTTTTCGACGGAGATGGGATGGTTCATGCTGTCCAATTCAA
AGAGGGGGCTGCTAGCTACGCTTGCAGGTTCACTGAAACAGAAAGACTCA
TCCAGGAGCGTAATTTGGGGAAGCCTGTTTTCCCCAAAGCCATTGGGGAG
CTTCATGGCCACTCAGGGATTGCTAGGCTTGCTTTGTTTTACGCTCGCGG
CTTGTTTGGCCTTGTTGATCATTCTCAGGGCACTGGCGTGGCCAACGCGG
GCTTGGTTTATTTTAATAACCGATTGTTAGCTATGTCTGAAGATGACTTG
CCTTATCATGTGGAGATCACTTCTTCGGGTGATCTTAAAACTGTTGGGAG
GTACAATTTTGATGGCCAGTTGGATACCACGATGATTGCTCACCCCAAAA
TTGATCCGGATACTAAGGAGCTCATTGCTTTGAGTTATAATGTGATTCAG
AAGCCTTATTTGAAGTACTTTCGGGTTTCACCTGATGGAGTCAAGTCGGA
TGATGTTGATATTGAATTGGCTGACCCGACTATGATGCATGATTTTGCAA
TTACGGAGAATTTTGTGGTCATTCCTGACCAGCAAGTGGTGTTCAAGATT
TCGGAAATGATACAAGGTGGATCACCAGTGGTGTATGACAAGAATAAAGT
GTCGCGTTTTGGTGTTTTGGACAAGTATGCGAAAGATGGGTCTGGAATTA
AGTGGGTTGAGGTTCCGGATTGTTTCTGTTTTCATTTGTGGAATGCTTGG
GAAGATGAAGAAAGTGATGAAATTGTGGTGATTGGCTCTTGTATGACTCC
AGCTGATTCTATTTTTAATGAATGTGATGAAGGATTACAGAGTGTTCTGT
CTGAAATTAGGCTCAATTTGAAGACAGGAAAATCAACACGAAAGCCAATT
ATGTCATCGGAGGATCAAGTGAATCTGGAGGCAGGGATGGTGAACAAAAA
CAAGCTGGGAAGAAAAACCCAGTTTGCTTATTTGGCCATTGCTGAGCCTT
GGCCTAAAGTTTCTGGTTTTGCGAAAGTTGATCTCTTCACTGGTCAAGTC
CAGAAGTTCTTTTACGGGGATCATAAGTATGGAGGTGAGCCTCTTTTTCT
CCCAAAAAACCCGAATTCTGAGAATGAAGATGATGGCTATATATTAGCAT
TTGTTCACGACGAGAAGGCATGGAAGTCGGAGCTTCAGATCGTTAATGCC
ATGACTCTAGAGTTAGAGGCCACGGTCCAGCTTCCGTCCAGGGTGCCATA
TGGATTCCATGGCACATTCATTAGTGCAAAAGATTTAGAAAGTCAGGCCT
GATACTCAATTTGGCCTGATCAATAGTTTGCTAGTTTGATTGTTATTGCA
GCCGAGAATTATCAGAGGGATTGATCATACGTCCCCGAAATTCCCCGAGC
TGTTTAAACTACGGACCTTTTGTTGGTTGTCACAAAAGAGTTCGGATAGT
ATCATTTATCTTGTTTATATGTAATGATTTCATGGGAAGATTTGAAGC
This is the primary representative sequence for this feature.
Sequence Length:
2048