Resource Type:
Analysis
Name:
Repeat Explorer 2013 Analysis
Description:
A RepeatExplorer (http://repeatexplorer.org/) analysis performed on Illumina reads of the carrot doubled haploid line used for genome assembly.
1,018,607 Illumina reads trimmed to a uniform 90nt length were used for clustering.
Data from this analysis can be viewed in JBrowse here.
File:
| File | Type |
|---|---|
| DCARv2 RepeatExplorer JBrowse GFF3 | GFF3 |
Publication:
Novák P, Neumann P, Pech J, Steinhaisl J, Macas J. RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.. Bioinformatics (Oxford, England). 2013 Mar 15; 29(6):792-3.
Program, Pipeline, Workflow or Method Name:
RepeatExplorer
Program Version:
not specified
Date Performed:
Saturday, January 12, 2013 - 21:33
Data Source:
- Source Name
- : RepeatExplorer 1,018,607 Illumina 90nt reads
Organism:
| Name | Common Name | Comment |
|---|---|---|
Carrot | For a general overview of carrot, see the Carrot Facts Page |
