DCARv2 RepeatExplorer JBrowse GFF3

Resource Type: 
File
File Type: 
GFF3
Download: 
Download File NameAvailable atSizeMD5
repeatexplorer.gff3.gzCarrotOmics4.84MB7ecd079fdd02ee7a4de341c5d6395c55
Description: 

A RepeatExplorer analysis performed on Illumina reads of the carrot doubled haploid line used for genome assembly. This is the GFF3 file used for JBrowse. See the linked analysis below for further details.

References: 
The following records refer to this file:
Analysis
Organism
Analysis: 
NameDescription
Repeat Explorer 2013 Analysis

A RepeatExplorer (http://repeatexplorer.org/) analysis performed on Illumina reads of the carrot doubled haploid line used for genome assembly.

1,018,607 Illumina reads trimmed to a uniform 90nt length were used for clustering.

Data from this analysis can be viewed in JBrowse here.
Organism: 
NameCommon NameComment
Daucus carota subsp. sativus
Carrot
For a general overview of carrot, see the Carrot Facts Page
License: 
NameAttribution 4.0 International (CC BY 4.0)
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