ASM162521v1

Resource Type: 
Analysis
Name: 
NCBI Assembly ASM162521v1; Daucus carota cv. DH1; Chromosome level assembly
Description: 

This assembly represents the NCBI GenBank record for the Daucus carota DH1 Chromosome level assembly published in 2016. This is based on the same assembly as described in CarrotOmics record Carrot Genome Assembly DCARv2

File: 
FileType
NCBI FTP Download for GCA_001625215.1_ASM162521v1NCBI Data Download FTP Link
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There is 1 relationship.
Relationships
The analysis, NCBI Assembly ASM162521v1; Daucus carota cv. DH1; Chromosome level assembly, is a part of analysis, Carrot Genome Assembly DCARv2.
Cross Reference: 
CarrotOmics
Genbank Assembly
NCBI Assembly
NCBI WGS
Refseq Assembly
Program, Pipeline, Workflow or Method Name: 
SOAPdenovo + GapCloser for SOAPdenovo + integration with linkage maps
Program Version: 
v. 2.04 + v. 1.12 + v. NOV-2013
Date Performed: 
Thursday, May 5, 2016 - 19:00
Data Source: 
Source Name
: SAMN03216637
Organism: 
NameCommon NameComment
Daucus carota
Biomaterial: 
NameDescription
SAMN03216637

This biosample is also known by its germplasm accession of DH1, please see this record for more details.
Stock: 
NameUniquenameStock Type
DH1
DH1
breeding_research_material
Project: 
NameDescription
Daucus carota subsp. sativus cultivar:DH1 Genome sequencing and assembly

Carrot (Daucus carota subsp. sativus) whole genome de novo assembly
Daucus carota subsp. sativus cultivar:DH1 RefSeq Genome sequencing

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA268187). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Note that NCBI has substituted different organellar genomes in this assembly from different genotypes from earlier assemblies, this applies only to this RefSeq assembly.