Daucus carota subsp. sativus cultivar:DH1 RefSeq Genome sequencing

Resource Type: 
Project
Name: 
Daucus carota subsp. sativus cultivar:DH1 RefSeq Genome sequencing
Short Description: 

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA268187). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Note that NCBI has substituted different organellar genomes in this assembly from different genotypes from earlier assemblies, this applies only to this RefSeq assembly.

Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Iorizzo M, Senalik D, Szklarczyk M, Grzebelus D, Spooner D, Simon P. De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome.. BMC plant biology. 2012 May 01; 12:61.
  3. Ruhlman T, Lee SB, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H. Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms.. BMC genomics. 2006 Aug 31; 7:222.
Relationship: 
There is 1 relationship.
Relationships
The project, Daucus carota subsp. sativus cultivar:DH1 RefSeq Genome sequencing, is a subproject of project, Carrot Genome Sequencing Project.
Analysis: 
NameDescription
NCBI Assembly ASM162521v1; Daucus carota cv. DH1; Chromosome level assembly

This assembly represents the NCBI GenBank record for the Daucus carota DH1 Chromosome level assembly published in 2016. This is based on the same assembly as described in CarrotOmics record Carrot Genome Assembly DCARv2
Biomaterial: 
NameDescription
SAMN03216637

This biosample is also known by its germplasm accession of DH1, please see this record for more details.
Cross Reference: 
NCBI BioProject