Carrot Genome Assembly DH1 v3.0 Resistance Gene Annotation

Resource Type:

Analysis

Name:

Description:

PRGdb 3.0, a comprehensive platform for prediction and analysis of plant disease resistance genes, was used to predict the disease resistant genes in v3 as well as the v2 for the comparison purposes. The data from this analysis is presented in supplementary table S19 in the carrot genome publication.

File:


File	Type
DCARv3 Resistance Gene Annotation	GFF3

Publication:

Coe K, Bostan H, Rolling W, Turner-Hissong S, Macko-Podgórni A, Senalik D, Liu S, Seth R, Curaba J, Mengist MF, Grzebelus D, Van Deynze A, Dawson J, Ellison S, Simon P, Iorizzo M. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots.. Nature plants. 2023 Oct; 9(10):1643-1658.
Osuna-Cruz CM, Paytuvi-Gallart A, Di Donato A, Sundesha V, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.. Nucleic acids research. 2018 01 04; 46(D1):D1197-D1201.

Relationship:

There is 1 relationship.
Relationships
The analysis, Carrot Genome Assembly DH1 v3.0 Resistance Gene Annotation, is a part of analysis, Carrot Genome Assembly DH1 v3.0.

Program, Pipeline, Workflow or Method Name:

PRGdb

Program Version:

3.0

Date Performed:

Friday, October 7, 2022 - 00:00

Data Source:

Source Name: : Carrot Genome Assembly DH1 v3.0

Biomaterial:


Name	Description
SAMN03216637	This biosample is also known by its germplasm accession of DH1, please see this record for more details.

Project:


Name	Description
Improved Hybrid de novo Genome Assembly, Gene Prediction and Annotation of Carrot	The project goals are to improve the assembly of the genome of cultivated carrot, and improve gene predictions using this improved assembly.