| NCBI BioSample |  |
|---|
| Name | Description |
|---|---|
The F4 population 74,146 was derived from a cross between USDA carrot inbred line B493, an orange-rooted line, and QAL (Queen Anne’s Lace), a wild-type white-rooted carrot from the United States. The TASSEL-GBS pipeline version 4.3.7 was used to call SNPs. The carrot genome assembly v2.0 was used as a reference to identify marker locations. SNPs were filtered for <10% missing data for genotype and marker, >10% minor allele frequency, and no more than two alleles. The linkage map from this publication can be viewed at 2017 74,146 Data from this analysis can be viewed in JBrowse here. |
| Name | Description |
|---|---|
The F4 population 74,146 was derived from a cross between USDA carrot inbred line B493, an orange-rooted inbred line, and QAL (Queen Anne’s Lace), a wild-type white-rooted carrot from the United States. This population was found to be segregating for root color (yellow, orange, or dark orange) associated with the Y2 locus. Genotyping by sequencing was used to find single nucleotide polymorphisms (SNPs) within individuals of this population. |
| Name | Description | Type |
|---|---|---|
| USDA ARS | United States Department of Agriculture - Agricultural Research Service | Research Group |