Resource Type:
Gene
Organism:
Name:
DCAR_023089
Identifier:
DCAR_023089.gene
Locus Tag:
DCAR_023089
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_023089, is a part of gene, DCAR_023089. |
| The genetic_marker, MK002185 ESSR-080, is adjacent to gene, DCAR_023089. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_023089 | DCAR_023089.mRNA | mRNA | DCARv2_Chr6:1916922..1929472 |
Sequence:
ATGGAGGATTGGTCAGTGTATGCGAATAGTCCTGCTCATCTGGCTGTTGC
GAGGGCTGATTACGCTGCGCTCAAGAGGCTAATCTCTGCTCTTCCTAGGC
TTGCGAAAGCCGGGGAGGTTAATACGGAGACTGAGAGTTTGGTGGCTGAG
GCTGAGGCAGATGCTGTTTCCGCTGTCATTGATCGCCGTGATGTTCCTGG
TAGAGAGACCCCGTTGCATTTGGCAGTTCGCCTTCGGGATCCTATTTCTG
CCGAGATTTTGATGGCGGCTGGGGCAGATTGGAGTCTGCAGAATGAGAAT
GGATGGAGTGCTTTACAAGAAGCCGTTTGTAACCGAGAGGAGAATATTGC
GATGATCATTGCTCGCCATTATCAGCCTTTTGCGTGGGCTAAATGGTGCC
GGCGTCTGCCTCGAATTGTTGCCTCAGCTGCTCGAATTCGAGACTTTTAT
ATGGAGATTACGTTTCATTTTGAAAGTTCAGTGATTCCGTTTATTGGTAG
AATTGCTCCATCCGACACCTACCGCATATGGAAGCGTGGTTCAAACCTCC
GTGCTGATATGACCCTTGCTGGTTTTGATGGCTTCCGTATTCAGAGGTCT
GATCAAACTTTTCTTTTTCTCGGGAATGGATATTCGTCAGATGATAATAA
TGTTTCACTACCTCCTGGTTCTTTAATTGTCCTATCTCACAAGGAGAAGG
AAATTACAAATGCTTTAGAGGGAGCTGGTGCCCAGCCATCAGAAGCAGAA
GTTGCTCATGAAGTAGCCTTGATGTCTCAAACTAACATGTATAGGCCTGG
AATTGACGTTACTCAGGCTGAGCTTGTTCCCCATCTGAATTGGCGGAGAC
AGGAGAGGACCGAGATGGTAGGAAACTGGAAGGGAAAAGTCTATGATATG
CTTCACGTGATGGTGAGCGTGAAATCAAGGCGAGTACCTGGTGCTATGAC
AGATGAGGAGCTTTTTGCAGTGAATGAGGATGAAAGGTTAGTAAATGGAG
CTGATCAGGATGAGTATGACGATGTTTTAACAGCTGAAGAAAGAATGCAG
TTAGATTCTGCACTTCGCATGGGTAATGCTGAAGGCCCCTGTGATGATGA
AGAGTCGGATGTTCAGGGTGGCCATGAAAATGGCTGCGGAACTTCATTTG
AAAGTTGTGAATCAAATGGTTCTAAGGAGAAAAAAAACTGGTTTGGGTGG
AACAAGAAAGGTTCAAAAGCCGTCGGTGATAACCAGGATGACTCAAAGAG
CTTAAAAAAGTATTCCAAGTTGGCCCCTGAAGGTAGCAATCAGAAGCTTA
CTGAGAGTCAAAGATCTTCATCTGACCTTCACAAGGAGGATGCAGGGGAC
CATAAGAAGAATAAGGGTAACAAGAAAAAAAAGAAAAAAGGGGTAAATGG
CGAGCCTAAAAGTGAGAGTGAGTATAAAAAAGGTTTAAGACCAGTCTTGT
GGTTGACACCTGATTTTCCCTTACAAACAGAGGAACTAATACCGTTACTG
GATATCTTAGCCAACAAAGTGAAAGCTGTTAGAAGACTAAGGGAGCTTTT
AACTACAAAATTACCACATGGTACCTTTCCCGTCAAGGTAATTCTTTCTT
TATTATTCTGCATCTCTAAATATCACAAGGAAGTGTACCAGCATACTTTG
CTCCTTCATATAGGTTTGTGTCTACCATTTTAGTTCTGGTTTGTGCTTAA
TCTTGCAGTCATCATCATTCATATGCAATGTAATCTAAAAACAAGTGTAC
CTGATGAATTAAAACGATTAAGCATGAGCAAAGGTGGAATATCTCCTCAC
TAAATAAACAAAGAAAATGATCCAGTTCCCAAATAAATGCTTCTACTTTT
ACCGCTACACTCCTTTAACATGGTTTGTATGTAGTGAGCTGTGAGCAAAC
ATAAGTTCTTATATATTTGCATGTCCATAATTAATATTACTATTTATGGG
AAGAAAGAAGTATTCTATTATGATGTCTTCATGGTATCGCTTGTATCTAC
AGTCTTAAGGTCATTGCTTGTTTACCTGGTCTTCAAATTACTAGTAGGCA
ATACCAGGTGCCGGAATAAAATTTGGGGACAATACGTCAGTGAACTCAGA
AACAGCAAATGCTGGTTTTGTAAATTGTAACTGAACGGCAAATAGCCGAA
TCCGGTGAACCCATTGCATAGTAGTTTACTGGCTTCCTTCTCAAATCTCA
GAAGTATTTATGCAAGTAATTAAGTATTATGGAATTCTATATTCACCCCA
AAATTGAGCCAAAAACGTTAATTGAAGCCTTCCTCCCTTTGGCATAAGAA
TTTTGAACCTTGGGACTGGCTGGGGCCTTATTTTCTTATTGTCTCAAGTG
CTTTGCAATAATAGGTTGGGGNTGCCTTATTTTCTTATTGTCTCAAGTGC
TTTGCAATAATAGGTTGGGGGGTGCATTTTTTGGAATTAGACGAGCATTA
GTTAAAATAATCATAGTACATTAGTAACTCTCTTTATTGTATCATTTCAA
GGTGCTTACACATCAGTATAGTCTCAGCTATATTAGGGTGAGCAAGTATA
CTGGATAATGTGGAAGCCTTTCTGACTTTCAACTATGTTTTGGGGTTCAA
ACACAATAAGAGGGTGGGGGTACGGGCACCTACTGATAATTTATATGGTT
GATCTAGTCACAGCATGGTCATGTTTGGCAATCAATTGATTGATTATTTA
GTGTCTGCAACTCACGCCACTAGGGTCCTCATCTCAACTTCTTTACCATT
CTTTTAGTTCATATGTTGATGGCATAATGAATTACACTAATCAGTATGCT
GATAAATGCCATTTTACCTAATTAAATTGGTTACATATGCTTTTTTTTTT
TTCCTGTTGAAGATATCGAACAGATGCATCTTCTTGTTTGCATTGCATAT
AATATACCACTTTTTAAATATTACACGTAAATGTGTGAAAGTAAAATGTA
TACAAGAGACTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATGTATACAAGAGATTGCTAAAAAGGCCGATAAAATTAGT
AGCAAAGCCAAATATGTAATCAAGAGATTGCAAAATTGGTAGCAACACCA
TTAGAATGCACAAAGTTATAAGGCCAAGCTCTCTCACCTATTTCAGAATT
TATTATAATCATTGTAAAGATGATTAGGCAACTTATATTGCATGATACCC
ATGTTAGCTGACCAACACTCTTAAAACCTCAGGTCTTCTGGAAAATCCTC
CAGATTATTTTTTATCATTTCTCTTCCCTTGAAAGCCTATCTTGGGATTC
CTGAGTGCATTACTAGGAGGCTAGGAGCTCTCAGCATAGCCTTCATTATG
GCATTATTGAAACAGGTTCTTGCATATATAAGATTTATGTACCAACATTC
TGGAAGTTGCTCAAGAAAGCATGCTTGATCCTGTGTGAGCCAGAGATTTG
ATTAGACATGATCAAAGAATGAGCTTATCTACTCAGATCACCATCTCGAG
AACAATAGTTTTTGGCTCTTTGTATTATTGAGTTTTATATGATTGACAGA
CGGAATGTTTGCTGTTAAAATTTGAGAATAGATTTAGACATCTATAATGT
GCAAATATACCTATTGCTGTAACAATGATCTATCATTTACGCCTCTCTTC
TCTTCTTTTGGTTTCTGTATTATTGTTGTCCTTATCCTGTATTTGTGCAA
GCAAAATATAGTTCACTGTGGTCAATTAAATCTGACATACCTGCATACTG
GCTAACAATGTGGGACTTGACTATTGTTTGTAACTGTAGATTGCCATCCC
CATTGTGCCCACCATCCGAGTCTTGGTCACATTTACAAAGTTTGAAGAGC
TTCAACCAGTTGAGGAATTCTCAACTCCTCTCTCCAGCCCAACACACTTT
CAAGATGCCAAGTCGAAAGAAGCAGAAGGGTCGCAATCATGGATATCATG
GATGAAGGGGAGCCGTTTACCATCAAGTGACAGTGAGGGTCGCAGCTTCA
AGGATGAAGTTGACCCATTTCACATACCATCAGATTATACATGGGTCGAT
GCCAATGAGAAAAAGCGACGCATGAAAGCCAAGAAGGCCAAGAACAAGAA
AAACAGAAAACAAGTAGGTGCTAAAAATCCAGAGAGTGTACGCCATGTGG
GAGAGAATATGGAATAATCATACACAGTTTCTTTCTGGTAAGGTTTCTGT
TTCAGAGTCTTTAGCCGCAAGAGAAGACAACACTTCCTGTAGAGGCTTTA
TTTCTTCCTTATTGGTGATGGCAAGAATTACATGAAGTATGTTGGGACGG
CCTCTTAGGTTATGCTGCTCTTGTTGTATTTGTTATAATTCCCTTGGAAA
TTTCGAGGAACTCTATTTCCTTGCATCATTACAAGTTTACTGCTTCGCCA
ATATTGGAGACTGCGTGGTGTATCTGTATGTATGATTATTTAATTATGTA
TTTTCTGCTTCAGTTTCTTATATTGTCAAATCGTATGATGCAAATTTTGT
GAATGAAGTTGGTTAGTGTTGGTGGACGTGGACACCATGAGAAATGAAAT
GAGGACACACTATAGAAAGAGCAGTAAGACCTGCATTTGTAGCTTGGTGA
TCGGTTAATGGTGTCTGAGAGACTGTTTGTTGGTGTGGAGGAAGGCATCA
TAAGGAATATGGTGACCGATAGACCGGATTGATAATTATTAGAGTTTAAA
TTCAATGTTCGGGCCTTTGTTTACAGGTTACTATCCCTTTTATTCCACCA
CCAACTCAAATTTCCGGATGGCGTTGATTGAGAAAAGTTGTACAAGACAG
ATTATTAGATAGTTCTGTCTCTATTGCAGTAAGTCGATTCTGGTTTAATG
TTATATTGTTAAAATTAGATGTTCATATTAAAATGATTGAGTTTATTAAA
AAAATATATAAAAATAAATGACATGTCCCGCAAGTAAAATGCATCATATC
ATCAGAACAATTATATGTAAAAATATTATATTGAAAACATCATACAAGAA
AGTATTAAAAAAATATAAACTCTAAGATATTACAATATAAAAACTAATAA
TTTGTATATATACGATATACGCTCAGTCATCTATAAAAATTTTAAATCTA
AATTATTCTAGAAGTAATAAATCTATTTTTTTTGGAAATAAAAATTATGA
TTAATAAAAATGAAATAGATGTATTAATAAAAAATTAACACGACCCGTTT
TAAAATTTATGTTAGGTTATATTAAAGTTACTTCAACGGCTGACTGTGTT
AAAATTTTCCTCTCGAACCTTTCACAATTTAAATAAAATTTGTCCAATGA
AAGTTTTTTTTAGACTTGTTACAATTTCAATATTAAAAAAGGAAATGAGA
GGAACCCAATGGGACTGCCCATATTTCGGTGTAACCATACAATGGTATGA
CTGTCTCATTTCAATCTAAAGATCAATTTCATACATCAACTAGTAAATAA
AAAATGATTACAAATTTTGTACTCCCAAAAACAAATTACACGATTGTGAA
AATAACAAAGCAGTTGAATTTTCTCTATTTAAAAGGCGGTTCCATTTCAT
GAGCAAATTCTCCGTGGCTCGTTTTGCTATGACCGAATAGGTAGTGCTAA
TCAATGACATGTTGCAAGAAATGTTTTTATCTGTTTTTGTGTCCAATCAA
TTAGGTTTCAAATGTCGGATACAGGGATGAACAATCCACGTTACTTAGAC
TGTATTGAATACAATTCTTCAACTTCCAACCGGCAATTTTGAAGATGTTC
CTGAGAATATTGAACTATAATTTCTTTCAAGGGATTCATTTTATGAGAGA
ATACGATGGTACATTGCCAAAGAAAATATATGTGAAGCATCTACTTAAAG
AATGAAACTTCTTATTTGTTTCTTCTTACGTCTTTGCTCCAAAACTAGAG
GCTTTTTTGGATTGACTCAATTCAATCAAAGAGTCGGAGTTTCTCTTGCC
AACAAAACTCAGATCACTACGGGCACCTAATCATGCAAGAATTCCAAAGG
TGCATTGATACAAAGAAGAGTGTTTGGTAGTCCTTACTGATGCTCTGGAA
GAATATTTGCAATCTTTACAAGATGAGCAACCACCACAGCTAGAACAACC
TGATCCTGAAATTCCCAAAGAACCGGTTATTGTTATTGATACTATCCATT
AACAAATTCCTGAAGAACCTATTGTTGAAGATCAATCTCTAGTAGAAGAA
GCTATTCTTGAACTTGAACCTGAAGTTGATGCTGACCATCAAGACTCGGG
GGATGAAGTTATAAAAACTGAGGCTGACGACTTTCTTCAGGATAATACCA
ATGTACTGATGATGGCTCTGAAGGAGCTAGCATGCCAATCAGTCAAAAGG
GGACAAGTACACCGGCTGGAGTCCACACTTCAGAACTAGCTCGCATATCG
GCTATTGTGTGATACTTTCACTTTGGATACTTCCACTTTGATTCAATATG
GGGATTTGCTTTTAGAGCTGCCATAGGTACTTTTGATAGCCATCAACTCT
TCAACTCGAACCAAGTAACCATCCATCCATCCCTTCTCACTCTTCCATTT
TATATCAACAACTACTTCTTGAAGGGTTTCAATAAGAGCACGATCCTCCT
CATCACTCTAATTCCTCTTATTCTTTAATCTTCCAATGTTCATACTATAC
ATGAAAAATCATGAAAAGACATAATTAGTATTTAAAAAGTTTGTCATGCA
CAATTCGACAAGTATAATTTGTGTAATGTGTCATTGAACAATAGTGATTC
AACTTGACCCACATAAGAAAGTGATATTTTAATCAATGAAACACATTATG
AAATGGTTCAACTCAAACTAAAATATCGACGAATATAACTTATTCAATTC
AACTATAATGTTCACCGGAAAGAGTAAAGGATGTCACTAGGTATACTTCA
AGGATGTTAGGACATGCAAAGAACATGACACATCTCCTCTAGTTAATAAT
ACCTAGCCAGCACAAAGATAACCGTTCAAGAAGAATGTAAAAGCGTAAGC
ATGTAGAATTTAAAAGCAGTGGAAGGGAGTTTCATGTTGATCATTGGATC
TTTAAATGAATAGCTAAAAATACTCTGGCCGATCTCCTATAACATATTTT
ATATATTTAATTTCATCATATTTTATTTTTAATGTCATGTAGTCCTTGTT
GAGCATGCATGAGTTAATTGTTTGGTGAAGCTTGTAATTATAGTCACATA
AAGCTTTAAATTATCGTTTGTATTTTTAGGTTTCACAAACTTTTCTTAAT
TTGTATATCTCAAAAATACAGCTTCCCCACAATCCTGTGTAATATAATAA
TATTACTTGTTTAGGTGCCTGATGGAATTTTGAAATAAAATTGGCGATAT
TGGTTGGGAAATATAAATGATAGAAAAGAAGACAAAGTAGTTTTACTTTT
AATCTTTATCACTCACTTAGTAATATTAAGTTGATCGTGTGCATCCTTCT
CTGAGTGGTAAACTTATGTTCCCGTAACAATGTATAAATGGTGATGTTTT
CTTGCATACTGTGTTGAACATTTGCTGTATTTGACTTCCTTGACTAGCTA
AGAGATCAGAAGAGGAAAGGCAAGTGGGCGGGTAATGTGTCTGAACTACC
ACTGGAGAAAGCACATGCACAATTGGAGCGATATCAGAACCTTGATGATG
AAGAGACGGATTCTGATAAGAAACTTGGTGGTAATGGAAACACATATTTT
GTTGTGCCCATACTAATGGCACATTCGAGTAATTTATCCAAAAATTATAA
CCCATATAGAATAGAGTACGTTGTGTGTATGTCAACGTTCAGTGTACAAA
ATTGTCTCAGGCATCTTACATAATGTTGTTTAACACATGAGAGAATATGT
TATATTGCTTCTACAAATGTGTAGACATGCATGCACCCACACCTACACAT
TTTTCATATTTACATGCGGTTTAGAATATAAATTTACACACACACATATA
CACCACATACACAATGATACAAATTTACCAGACAAATTTAAATGTAAATA
GGGAAAGGAGAAAGTGACACATGTGCTTGTAATCTCGTTTCTTTTCTAAT
TATTTTTGCATTTAAATCTTTAAGAAAGATTTTAGACTGTTGCTGATTGA
CTATATTAACTGCCATACAACCCATGTCAACTATCACTATAAATTACTTA
TTCAGTTCTATTACCCATGTCCACTTCTTATCAGTGAAAAATCATATATC
ATTTCATACTCATTAGTCTTCAAATAGAAAAGAAATTCATTTATGGAAAT
TTCTCTAATTGTGAAAAAAATCTGGTAAATTTTTCTTTGATGGTATTTTT
TTCTTTTTATTTGTCTTCCTATTGTTTGTAAAACTCTTTAGGTTCAGTAA
GAGTTTCCTCAACTGCACACTGTTCCAGTAATGTTTACGAGGATCTCAGT
GATGATTGTTTATCAAAAAGTCAACTTGCTGTGGAAAAAATTTCAATTTC
ATCTATTCACCCTCTGGTGACCTGAAAATTACATCAAATTGTAATCGTGC
TACTATGCAACCTTTTGTTTTTTGCAAAGACATGCGGACGATTTTAAAAG
CTGCGGAAAGTAAATTTTTAAGGTCAAATGCAGGTGTTTGATCATAGAAT
TCAGTAGTTAACTTGGTAAAAGAATTGTTTTGCAATTATCTAGAACAGAC
AGATGGTTCTGCAGAAGATTATCTAGATTCCAATTGCAGCAGAGGGAGGT
ACTCGGGAACTGATGACATAAGTAATGGAACAGAAAAAGTAAGAATTCCG
CTTGTTGATGATTTTGGCAATGAGGATGTTCTTGATTTTACGTATATTTC
CCAAATACAATTTATCAGAATGCATATGTGCATGTGTCCCTAGCTCGCAT
TGCTGACGATGACTGATGTTCAATATGTGCTGGAAATTGTCTTTTATCAC
AAGTCCCTTGTGTATGTGCTCGTGATACTGGAGGAGAGTATGCATACAAA
AAACAAGGCCTTCTGAAAGAAGAGTTTCTGAGGTTATATATTTCTATGAA
CTTGGAGCCTCACAAACACTATTTGTTTAAATGTCAAGATTGTCCTTTAG
AGAGGGCTAAAAATTCTTGCAAACCTGAACCATGCAAGGGGCATTTAGTC
AGGAAATTCATCAAAGAATGCTGGAGGAAATGTGGCTGCAGTATGCTCTG
TGGGAATAGAGTTGTACAGAGTGGTGTTACCAGAAATCTGCATGTGAGCA
AATTCAGCCTAGTCTTGTTTCTTCACCTTCTGTTTGCAAACTTTGCATTA
CATATGAAAATGTGGCATTAAGCAACCGTTATTAATTATATTTTGGAATA
TTAGAACTATGATTCATATTCGACTGTGAGTACTTCAGCATATTATGTGA
TTGTGTACATGTATTATGTCTTGAGAAGTGTTATTTTACAACTTTTATCA
ATTCGGTGCCTATTAAAATTTGCTCAGTAAATTTTGATTATCAATCAAAA
TTTGCTCAATAAACCTTGATGCGGATTTGGGTTCTAGAAAGAGTTTTGAG
GGATGAGGATGATCTTTGCTTGGATGAAACATTATATGGAAATATTGCAC
GGTTTATCAATCACAGGTAATAATCGTTATTGTATCCGTCTCTAAGTGTG
TCCAGATTCTTTCATACTTGATATTGTCTCGGAATGTAATTGACAAATGA
TTCATTTTCACTGAGGAATTGGCAATCAAATACCTCATTAGAAAGATTTA
ATCTCTGGAACTTTTTTCTGAGCAGTGAATTCCGGAATTCTTTGTTCCGG
AATTTACTGCTCAGAAGAAAGTTCCAGATTCTATATTAATTTCCTCGGAT
TAATTCAAATGACAACTATCCACCTATTATGCCTGAAATATGTGGCATAT
AACTGAGTTTAGAGTTGGTGGCTTTGCATTCTCCTCTAATCTTGAGAATA
TGTTTTTCTTATGAAGGCCATGTAATTTGTTGTTTAATATTGGAACTAAT
TAAACTTGGCATCTCCTGAATTTATGCTATTTACAATTATAATTGTACAC
TCCAAACTGACAGTCTGCTTACCATTGCCTATGATGGAGTTACATCTTTT
GAGTCATTTGCATCCATATTCAAGCATCTCAATCATACATATTATTTTGT
TTTCTCATTTTCTTATATTCATAATTTTTTTGGTCAATTCTTACAAAAGA
CTTAGACTGAAGCTGTATTAGTGTTGTTGCTGAATAATCTGTCCTCTGGT
TCCATTTATATACATTTTCAATTTATATGCAGTGTTTCAATACATTAATT
TTCTTTAGTATGGATATGTTGTAATATTTTAGTAGAGGTCGGGCTGGCAA
AAATATTTAAGGCTAAATTATGTTTTGTTTATATGCGGTAAATGCTGAAA
GTATTATATATCTGATTTAAATTCGACAACAAATTCAAAGACAGATATAA
AATAATGTAGTATATCAAGTAGGTCACCTGGAGAGGGATTATACATTAGT
AAGCTCCTTGCTTCTACTATTGAAGCATTCTGCTATACAACAGCAATAAG
AGACAGATAGTAATGCTAGCTACCTTACCACCAATGTTGTGAAAAGCGCA
AATCGGTCCTAAGCGATGGAGTGACCTTCTAGCGCTAAAGCAGACGCTTA
AGCGGAATTTTAAGCGGGTCAATAAGCGGATTAATAAAATATAAATAAAT
ATTTAGTTATAATATTAATGTAGTTAAAAATAATATTATGTTGGGTAAGA
ATTTATATTTTTAATATTTTTAATAAAATACATATTTTTGATTTTTTAAT
ATAGTTATAATTATATTTAAAAAAATAAATATTTTAGAATTTAAAAATTA
GCAAGTCAACATCATTTTGACCGCCAAATTACCGCTTAATGACCGCTTCA
TAGTCCGCTTAATTTCCAAAAACGCTTAATCACACGCTTAATATAAAATC
GAAGCGTCTTAGGGCCGATTCCGCTTAGGCGGCCGCTTAATGCGCTTTTC
ACAACACTGCCTGCCACAGATATAGATGGACTAGTGTAACATTTTTACCT
CAACTGCCATGGCTTTAGGTTTTATAGCTCTAATGTTTATGTCAAAACTG
AGAATAATGTTCAATCTGGCGATACAATTTAATTATCATCTGGAGTTAAC
CTTCAGCTATTGTACCAGTGATTATTTAATTATTTTTCCTCCAGAATTTG
AATAAACCGAATACATAGTCCTCTTCATAGATGACTATGCTTTAAGCACA
CTATTGTGTATTAGACTCTTTCTAATTTCATACAAATAAATTAACAAAAA
AATAAAAAACATTAGTGAAGGCCAACTTGTTGGTTGGCTACATGATTATC
AGTTTGCTATTTTATTCTCAAAAAGCAATAGTATTGCTAAAACACATGCT
CAGGTATGATGTCATAGTTTCTTATATTTCCATCAATGGTTAACTAGAGG
GCCATCTTCCCTTGCATCATGTAATATACATCGTAGATGAGTCATAGTTT
TTGCCACTGCAGGTATAGGATTACATGAGTACTTTTTCTCGAGCGTTTTT
ATCAGTTAACTCTTTACAATGTTCACTGCATCACTTAGAGAAATATTGCA
TTACTTTGATTTTAGAAAAGTTTGCGTGGTGTTTATCCCCATTTTAAGAT
ATTCAGGTTATAATTCAAGGTTATCAATCTTAGGTGCCATGATGGAAACT
TTCTTGCAATACCTGTTGAAATAGAGTCTTCTGATCATCATTACTACCAT
GTAAGAAGCCAAATATTTCAGGTATTTTCTAAGAAGTTATTTTTTTTTAA
CGTTATTACTAACATCTTTCAGCAGAAACTTGTTGATGTATTTGTTTAAT
TTTAAATTTTTGCAGATTGATTTTTTTACCAAGGAAAAAGTGAGTGCATT
GGAAGAGCTAACTTGGGTAAATAGTGTATATGTGTTCAGTGGGGAATTAT
ATTAAATTTTACGTTGTTGAAGCTGTTGAATATGTGGGAGTTTCATATGT
ACATGGACTGCAGAAAGAGTGGGTTAAACTCTACATTGGGAAGGTATTCC
AGAATTAAATTTGCTTGTTCAGGCAAACTAATGTAATTATTGGTAAATCT
TAAAGTAGATTAACATATTTATTTGGGTTTAAGTTTAGAAGGCACGTGTT
TGACTCATTTGACCAAACCCCTGCAGACTATACCTTGTTGCGTTGTTGTA
TAAATTATTACTACCTTTTTGCTTGATATTAGATTTATACTCATAACCCA
GGTTTTTCTTTTCTCGGTCATTTTGGCAAGTGAGGAAACATGTGATTTAA
AGTTATATATTGGTGTTGTTGACTCAGGCGACTGGCTATCCTGGATGTTT
TATTGATTACTTTGTTTTTATTCCAAGCCAAGCTGTGTTGTGGTATATTT
AGAAGCTTTTAATTTCCATTCTGTCGTGTTTTACTAACCATGCAAGAATG
GTCTATATGTGGTATATAGGATGAGATTGATTGTTAACATGCTTTATCAT
ATTGATTAATTGTCTTCTACAGGACTATGGAATAGATTTTGATGATCGAA
GTCACCCTATTGATGTATTTTGTCGAGGCATGAGAAGAGAAGGTGAGTAA
Sequence Length:
12550
Sequence Checksum:
3020aa28541f2694be98688ba1238097
View location in JBrowse:
Cds:
>DCAR_023089cds ATGGAGGATTGGTCAGTGTATGCGAATAGTCCTGCTCATCTGGCTGTTGC GAGGGCTGATTACGCTGCGCTCAAGAGGCTAATCTCTGCTCTTCCTAGGC TTGCGAAAGCCGGGGAGGTTAATACGGAGACTGAGAGTTTGGTGGCTGAG GCTGAGGCAGATGCTGTTTCCGCTGTCATTGATCGCCGTGATGTTCCTGG TAGAGAGACCCCGTTGCATTTGGCAGTTCGCCTTCGGGATCCTATTTCTG CCGAGATTTTGATGGCGGCTGGGGCAGATTGGAGTCTGCAGAATGAGAAT GGATGGAGTGCTTTACAAGAAGCCGTTTGTAACCGAGAGGAGAATATTGC GATGATCATTGCTCGCCATTATCAGCCTTTTGCGTGGGCTAAATGGTGCC GGCGTCTGCCTCGAATTGTTGCCTCAGCTGCTCGAATTCGAGACTTTTAT ATGGAGATTACGTTTCATTTTGAAAGTTCAGTGATTCCGTTTATTGGTAG AATTGCTCCATCCGACACCTACCGCATATGGAAGCGTGGTTCAAACCTCC GTGCTGATATGACCCTTGCTGGTTTTGATGGCTTCCGTATTCAGAGGTCT GATCAAACTTTTCTTTTTCTCGGGAATGGATATTCGTCAGATGATAATAA TGTTTCACTACCTCCTGGTTCTTTAATTGTCCTATCTCACAAGGAGAAGG AAATTACAAATGCTTTAGAGGGAGCTGGTGCCCAGCCATCAGAAGCAGAA GTTGCTCATGAAGTAGCCTTGATGTCTCAAACTAACATGTATAGGCCTGG AATTGACGTTACTCAGGCTGAGCTTGTTCCCCATCTGAATTGGCGGAGAC AGGAGAGGACCGAGATGGTAGGAAACTGGAAGGGAAAAGTCTATGATATG CTTCACGTGATGGTGAGCGTGAAATCAAGGCGAGTACCTGGTGCTATGAC AGATGAGGAGCTTTTTGCAGTGAATGAGGATGAAAGGTTAGTAAATGGAG CTGATCAGGATGAGTATGACGATGTTTTAACAGCTGAAGAAAGAATGCAG TTAGATTCTGCACTTCGCATGGGTAATGCTGAAGGCCCCTGTGATGATGA AGAGTCGGATGTTCAGGGTGGCCATGAAAATGGCTGCGGAACTTCATTTG AAAGTTGTGAATCAAATGGTTCTAAGGAGAAAAAAAACTGGTTTGGGTGG AACAAGAAAGGTTCAAAAGCCGTCGGTGATAACCAGGATGACTCAAAGAG CTTAAAAAAGTATTCCAAGTTGGCCCCTGAAGGTAGCAATCAGAAGCTTA CTGAGAGTCAAAGATCTTCATCTGACCTTCACAAGGAGGATGCAGGGGAC CATAAGAAGAATAAGGGTAACAAGAAAAAAAAGAAAAAAGGGGTAAATGG CGAGCCTAAAAGTGAGAGTGAGTATAAAAAAGGTTTAAGACCAGTCTTGT GGTTGACACCTGATTTTCCCTTACAAACAGAGGAACTAATACCGTTACTG GATATCTTAGCCAACAAAGTGAAAGCTGTTAGAAGACTAAGGGAGCTTTT AACTACAAAATTACCACATGGTACCTTTCCCGTCAAGATTGCCATCCCCA TTGTGCCCACCATCCGAGTCTTGGTCACATTTACAAAGTTTGAAGAGCTT CAACCAGTTGAGGAATTCTCAACTCCTCTCTCCAGCCCAACACACTTTCA AGATGCCAAGTCGAAAGAAGCAGAAGGGTCGCAATCATGGATATCATGGA TGAAGGGGAGCCGTTTACCATCAAGTGACAGTGAGGGTCGCAGCTTCAAG GATGAAGTTGACCCATTTCACATACCATCAGATTATACATGGGTCGATGC CAATGAGAAAAAGCGACGCATGAAAGCCAAGAAGGCCAAGAACAAGAAAA ACAGAAAACAAGTAGATCAATCTCTAGTAGAAGAAGCTATTCTTGAACTT GAACCTGAAGTTGATGCTGACCATCAAGACTCGGGGGATGAAGTTATAAA AACTGAGGCTGACGACTTTCTTCAGGATAATACCAATGTACTGATGATGG CTCTGAAGGAGCTAGCATGCCAATCAGTCAAAAGGGGACAACTAAGAGAT CAGAAGAGGAAAGGCAAGTGGGCGGGTAATGTGTCTGAACTACCACTGGA GAAAGCACATGCACAATTGGAGCGATATCAGAACCTTGATGATGAAGAGA CGGATTCTGATAAGAAACTTGGTGAAAGAGTTTTGAGGGATGAGGATGAT CTTTGCTTGGATGAAACATTATATGGAAATATTGCACGGTTTATCAATCA CAGGTGCCATGATGGAAACTTTCTTGCAATACCTGTTGAAATAGAGTCTT CTGATCATCATTACTACCATATTGATTTTTTTACCAAGGAAAAAGTGAGT GCATTGGAAGAGCTAACTTGGGACTATGGAATAGATTTTGATGATCGAAG TCACCCTATTGATGTATTTTGTCGAGGCATGAGAAGAGAAGGTGAGTAA
Pep:
>DCAR_023089pep MEDWSVYANSPAHLAVARADYAALKRLISALPRLAKAGEVNTETESLVAE AEADAVSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNEN GWSALQEAVCNREENIAMIIARHYQPFAWAKWCRRLPRIVASAARIRDFY MEITFHFESSVIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFRIQRS DQTFLFLGNGYSSDDNNVSLPPGSLIVLSHKEKEITNALEGAGAQPSEAE VAHEVALMSQTNMYRPGIDVTQAELVPHLNWRRQERTEMVGNWKGKVYDM LHVMVSVKSRRVPGAMTDEELFAVNEDERLVNGADQDEYDDVLTAEERMQ LDSALRMGNAEGPCDDEESDVQGGHENGCGTSFESCESNGSKEKKNWFGW NKKGSKAVGDNQDDSKSLKKYSKLAPEGSNQKLTESQRSSSDLHKEDAGD HKKNKGNKKKKKKGVNGEPKSESEYKKGLRPVLWLTPDFPLQTEELIPLL DILANKVKAVRRLRELLTTKLPHGTFPVKIAIPIVPTIRVLVTFTKFEEL QPVEEFSTPLSSPTHFQDAKSKEAEGSQSWISWMKGSRLPSSDSEGRSFK DEVDPFHIPSDYTWVDANEKKRRMKAKKAKNKKNRKQVDQSLVEEAILEL EPEVDADHQDSGDEVIKTEADDFLQDNTNVLMMALKELACQSVKRGQLRD QKRKGKWAGNVSELPLEKAHAQLERYQNLDDEETDSDKKLGERVLRDEDD LCLDETLYGNIARFINHRCHDGNFLAIPVEIESSDHHYYHIDFFTKEKVS ALEELTWDYGIDFDDRSHPIDVFCRGMRREGE*