Resource Type:
Genetic Marker
Name:
MK002185 ESSR-080
Identifier:
MK002185_ESSR_080
Organism:
Marker Type:
SSR
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK002185 ESSR-080, is adjacent to primer, ESSR-080-F. |
| The genetic_marker, MK002185 ESSR-080, is adjacent to primer, ESSR-080-R. |
| The genetic_marker, MK002185 ESSR-080, is adjacent to gene, DCAR_023089. |
| The genetic_marker, MK002185 ESSR-080, is located in gene, LOC108227668. |
| The marker_locus, ESSR-080, is an instance of genetic_marker, MK002185 ESSR-080. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2015 Br1091×HM1 | Chr6 | 58.16 | ESSR-080 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr6 | 8.403 | ESSR-080 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr6 | 7.771 | ESSR-080 | MapViewer |
| 2016 Integ NG bin map | CH6 | 9.255 | ESSR-080 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr6 | 58.16 | ESSR-080 | MapViewer |
| 2016 70349 NG bin map | Chr6 | 2.192 | ESSR-080 | MapViewer |
| 2016 Integ NG full map | CH6 | 10.355 | ESSR-080 | MapViewer |
| 2015 MB Merged | Chr6 | 7.771 | ESSR-080 | MapViewer |
| 2015 SFF×HM2 | Chr6 | 8.403 | ESSR-080 | MapViewer |
| 2014 70349 | Chromosome_6 | 2.192 | ESSR-080 | MapViewer |
| 2011 SS1061QTL | 1061QTL-3 | 0 | ESSR-080 | MapViewer |
| 2011 SS1061 | 1061-6 | 57.599 | ESSR-080 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr6 | 7.771 | ESSR-080 | MapViewer |
| 2016 70349 NG full map | Chr6 | 2.192 | ESSR-080 | MapViewer |
Synonyms:
- MK002185
Sequence Coordinates:
DCARv2_Chr6:1916796..1916969-
View location in JBrowse:
Sequence:
ACAGCCAGATGAGCAGGACTATTCGCATACACTGACCAATCCTCCATCAA
ATCTCACCCTTTCCCCCTTTCCTCTAATCAAATTCAGAGCCTCTGTTCCC
AAATTCACACACACACACACACAGGTTTGGAAACCACCTATCTAAATCAC
ATCCCACATTGCCAAATCTC
Sequences:
>MK002185_ESSR_080 ID=MK002185_ESSR_080; Name=MK002185 ESSR-080; organism=Daucus carota; type=genetic_marker
ACAGCCAGATGAGCAGGACTATTCGCATACACTGACCAATCCTCCATCAA
ATCTCACCCTTTCCCCCTTTCCTCTAATCAAATTCAGAGCCTCTGTTCCC
AAATTCACACACACACACACACAGGTTTGGAAACCACCTATCTAAATCAC
ATCCCACATTGCCAAATCTC
This is the primary representative sequence for this feature.
Sequence Length:
170