DCAR_022385 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_022385

Identifier:

DCAR_022385.gene

Locus Tag:

DCAR_022385

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_022385, is a part of gene, DCAR_022385.
The genetic_marker, MK000051 CCD1, is located in gene, DCAR_022385.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_022385	DCAR_022385.mRNA	mRNA	DCARv2_Chr6:13130560..13138883

Sequence:

ATGGGGGTGACAGAGCACGAGAAAAGCGAGCAAGTTGAGAGAATCAAAGA
TGTTGTGATTGTTAATCCCAAGCCAAGCAAAGGATTCACGTCCAAGGCTA
TTGATTGGATTGAGAGCTTGATTGTCAAGTTGATGTATGACGCTTCTGTG
CCTCATCATTGGCTGGCTGGGAACTTTGCGCCTGTGGATGAGACGCCTCC
TGCTCGTGATCTTCCAGTTATTGGCTCTATTCCGGTAATTTAAGCTCGAT
ATTCGACTTGATTAGCTTAAAGTATGTGGATAGTATGTGTGCTTTTAGTG
GCTTGTTCATTTTGTGCTTCAAACTCGGATGAAATGTGTGTGTTTTTGGT
GAATTGTGGAATTGTGTTTGGTATGGCTTGAGTTTGTTTTCTGATGTTGA
GTTTGATCACTATACAGAGAGAGAGAGAGAGAGAGAGTACATATACTCCT
ACTGAATTACGATCAATTGATATTTGGGGGGGGGGGGGGGGGTATGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCTGGTAGTGATAATGATCAATGGTAAATAATAGATGTTTGAGGG
AGGGACTCACTCTAGCGCCATATATGTGCTAGTTATTGAATTCAAATGAC
TGCAAAGCTGCAACAGGCGAATAATATACACACTTTTATTGAATTATGGT
CGAATTTGGATTTATGTATAAGATGAAAATTATTTCTTTATTTAGTGAAT
AATGTGTAATAAATTAGTGCATAGTTGTTCGAATTATTTTTTTTATTCAT
CAGCTTGTCTTATCTACCATCATCAATTTAGGCTCGCAAGTTTCCCAAGT
CGAATTGTTTGGTACTCGAGCTGGGGTTTAGCCCGATTTTATATTGGCAA
GTCAACCTGTTCTTATATTGTTGGTAAAATTATTTGTACCTCCAGTGAAT
TGTTTAAATTGTCTATTTTCAACTATATCTTATATCCTGATTCTGATTAC
GAATCTTATGTGTATTCAGAGTATTATAGTGAATCGCATAGGTTTGTGCA
GTTTACATCATTGCAGACTTTGTAGTTGGTGAAAGTAAAGTTAACTGTTG
GTCACTTCTATTATCATCAATATATTTGTTTCGGTTTAGGAAACTAAGTT
TCAGTAATTTCATTTTTTATTTATAGGAAATTCAAGAGTCTTGAATTTTT
GAATAATGATAACGTTTTTGGTCATTTATGGGAATCTTAATCTTTACTAA
CTAACGTTCATAATTTTAGATGTCTACACTGGTTTTACTTTTCTTAACTC
ACAGTTCTTTGAAATTAATTTTTTAGATGGAAGTCCTTTATTGTGCGACT
ATTAACTATATTTTGAATCTTGAAAGTGTCTACAGATATGAACATTTATT
AACTATATATGGTTTTATAGTGCAATATTATCTGTTTTCCAGTTAAATAT
GGTTATATGTGAATTCTTGACCTGTGTCTGCAGTATAGTATCCGTATTAA
TCTAGGCTAAATTTCATTAGCAAAAAATTATATTTTGGCAATATGTATTT
TGTGGGTTGTCAATGGAGCTTGACTTAATTTTGCACTAGTAATAGATATT
TCATTATGTTTCTTGAAGTGATAGTTAAGAAATTGGAAATTTATTGGTTG
CATCCTTTTTCTTAGCTAGAGAGATGAACCAAAATTTATAGTTTAAGGGA
GTTTAATCTGGTTTTTGATATTTATTTCTATGTTGCAGGAGTGTCTGAAT
GGTGAGTTTGTCAGGGTTGGTCCAAATCCAAAATTCTCCCCTGTTGCTGG
CTATCACTGGTACGTCCTTGCTCTCCGGAGGTGATTGGTATAAAAAGTGC
AAAGCTCACCCGTGTAGTATCCTATATTAACATAGTATAAGTAGTTCTGC
TCATATAGTCTTCTACGTATACATACCAGTGATGCCGGTCTTGTACTATG
ATTCTCTTTTCTACAATATGAGTTGTGTTTAAGTAACTGTTTTTCCTTAG
AATAATTCAGGATGATACTTATCCTCATTGCTTCAATTGTGCAGGTTTGA
TGGAGATGGGTGTGTTTTCATCTCCAAATGGAATTTCTTATTCCTCGAAT
GTTAATGAAAGGATTTTTTGAGTGTTACAATCCATTATCCTATCTGAATT
ACTCTAATCTTGATTACGATCTTTGAAGTCATTTTGTTAGTGCAATCACA
TATTGTGGCAGCATACTAAATAATTCGCTCAACAATACTTTGAAAAGGCT
TCCCCATCCTAATCACAATAAGTAAAAACACAAATGAAGAGAAAAAATTG
TTGTCACATCCTTATTGATTTTAAAATTAACAAAGTCAGGATAAGTAGCT
GATTTCTTGCTGTTCTGATCTGAGCTGCTTTCAAATTACAATGTAATTTT
GTAAATTTGTTCTTTCAACTGTATGCTGTAATTAAATGAAGCATACATTT
CATGACATTATATCAAGTGAACTACTTGGCATCCAAAATTACTAGGGCTA
TCTCTGTTCAGAAGATTGTAATTGGCAGATCATTTACTATTTGTCCTTAT
TTTACCATATTTAATCCTCTAAAATATTCAGATGGACTAGTTTATTTTAT
CAGTTTTAGTTCAATTTTAATGGGACTCTTAAATTCCACCCTCTCTGTGC
TATTGAATATTTTTTATCAAAAGAACTACAAGGTGCTTATTCTGTGAAAC
TGTAACAACACGGTGTTCCCGAATACTGAAAAGAAAAGAAAAGAATGGAA
AGTGGGTTATTTCCTTCTCTCCTAATCTTCTCAGATGTGGGAAGATAGTT
TTGGACACAATTCTCTAGCTTTCTTTTCCTTTCTTTCTAAATTTTTTTTT
CAGGAACAAGCTGAAGACATCATATCTTTTACTTTATTTTCTATTCTTTC
CACTAAATGTTTCGGGAACACAGTGTAAAGGATTGAGTATGATAATTAGA
GCATTGTTAATAGTCCATGGATTATTATCATTGTAAACAAACGTAGTCTA
GATGTCTTGTGGCAAGACTTAAGTTTGTTGACTACATTTTGGTGCAGTTT
TCAAGTGAGTTCCTTTTGCAGGAAATACTTTACTAAGATTTATTGTATCT
ATCTTCTATTTTAATGATTAGAATTTAATAAAACAGTCGCTTTTCAAGTA
AGAATAGTTATTATCCCCTCTTGGTAACCCAAGCACAGTTCTATGTTGTT
CATATTCACTTGACTGTATAGTACTCCCTCCGTCCCTTTTTAGTTGTCCA
GTTTTGACTTTCAACAGTCAAATTGACCAAACTTTGACTAAATTTCATAT
ATATTATATAATTGATAAAATATTTAAAAATTATATCATTGTAAAGTATA
TACAATCTATTTTAAAATGTAATTTTCAGTTTTTTAAAATCATGGAAGAC
TTGTCCGTAATCTTTGGTCAAAAAATGGTCAATTTGACCATTGATAGTCA
ATAGTGGACAACTAAAAAGGGACTGAGGGAGTATACAAGTTGTTGTGACT
TGAATGTAAATTATATTTTACTAGTTTTAATGAAATATTGATGAGGTTAA
ATATCTCATAGAAGACAAGTTAAGGGTACTGTTTAAAGCATTAGCTCATT
GGTGGATTGTCATTTATGGTTTACAGCATGATTCATGGATTACGCATCAA
AGATGGGAAAGCTACCTATGTCTCCCGCTATGTGAGGACATCTCGTCTAA
AGCAAGAAGAGACTTTTGGTGGAGCTAAGTTCATGAAGGTAACATCTAAG
CAATGGGAGCCCAGACCCTATACTTCTATTCTTACTAAATACCCTATACT
TTCTCCTCACCTGTTTTTAAATGGTAGTTTTTTGGTTAATATTCTTTAGA
TTCAGTTGTAGAATAAATTGCTAAGCGAGTTGATCGGTGATAGATGTGTG
CAAAACAAAATATCGATGTGTTAAAAAGTTATATGATCCCAAAAGCGGCT
CTTCCTACAACCTTAAGGTTGGGAGGGTTGGTCACTGTATACTGAGTGGT
TGTGTGGTCTCATGTTCGGGTTCTGGATCCACCAATCCCTCACTTTGTAC
ACTAAAGTTGTGCTCATGGGCTACTAGTAATCAACTCTGTAATGTGAAAG
ATGGGTCTTAATTCCTGAGATTGGTCTTTGAGAATAATTTAAAAAATGGA
TATAAGATTACATTCAACACCTCAAGCTTTGGGAAAGTTAGTTTTAACAT
ATTATGTTGGATATCTGGTCACTATTGTATTAAGATCTCTGTATGATTCT
CATCTTGATGTGCATAAACATGCCTTTGCTACATTAATTTCAGATTGGAG
ATCTCAAGGGACTATTTGGATTACTTATGGTCAATATGCAAATGCTCAGA
GGAAAGTTGAATGTACTAGATATGTCATATGGAAATGGAACAGGTAAGGT
GGTCAATTTTCTGATCCAAAGGCCATTTTGTTGGGAAGGTCAACTATAAT
TAGGATGACTATTAAACAAAATTTTATTAAAAGTTCTTTATTATGTCATA
TTGTTTGGAGAAACAAATGGAAGGAGCTGAAACAACTGTCTACTTCACTG
TCTTGCAGCTAACACTGCCATGATATATCATCATGGAAGACTCTTGGCTC
TTTCAGAAGCCGATAAACCATGTAAGCTATCCGCCCTTTTATGCTTAATA
CTTGTACAAGGGAAGAATATGTAATTTTTTCTTAATAATTGTATAGTTTT
ATGAGTTTCTGATCTTCATTATGAAGTTTGTGTGCAATTTTTATCTTCAC
TTCCATTGTTCATAATGACATCGATTCTGTCTGGTGTCATTATGATCTGG
TAGACTTGTACAAATTTGCCTCCCCCTCCATTTTTTTGTATATATTTACT
CCGATTTTATGAAGAAAATATTTCTTATAAAGCTAAAGGGATTTGAATGT
AGTAATAGACCTGAAATAGTTATGATTTGATCAATTAATTTTGAAGGTCA
CATTTTGCCAGGTAAGCTCAAGATCACAATAAAGAATGCCTCGTCTTTTT
TTCTTTTCTTTTTTTCCTTCAATATACTTGAAAATGTAATAGTACTATAT
TTACCTCCCAAGCCCCAGATTCCTGCTATATAAACAAGAACCCTCCCTCA
GCTCTTCAAGTTTAGTTTCATGTTTTCCCTTGTAAGAAGAAGTATGCGGT
ATTGTGTAAAAATATGAATCAGATTATTTTGTCATTTTAGGAATAAATTT
GTTTGGTAAGATTTCAGCGTATTAATATACCTTGTTATACTTTAATCCCA
CTTTGCAGTATTTTACATGAACAATTCATTGCATTTATATTGGAATGCAA
AACAAGAATAACCCACTATATTTTATCTCCAGATGCCATTAAAGTTTTGG
AAGATGGAGATCTACAAACTCTTGGATTGTTGGATTATGACAAAAGGCTG
ACACATTCTTTCACTGCCCATCCAAAGGTCGACCCATTTACCGGTAAAAG
CCATTCCCCATATATCCTGATAAGTTCTTTTTTAGAAAAAAATATATTTG
TTTGATAAGAATGTAATTGCTTGCAGGTGAAATGTTTACCTTTGGCTATT
CACACACACCTCCATATATAACATACAGAGTGATTTCCAAGGATGGTGTT
ATGAATGATCCAGTGCCAATAACATTAGCAGACCCAATAATGATGCACGA
CTTTGCCATCACTGAAAATTATGCAATTATAATGGACCTGCCGTTATACT
TTAAACCCAAGGTAAATGACTCTTTTTGGTCTATTATCTGCACTTGGTGT
GCGATACTAATGGATTATGCCTAAAGTTCTTCACTAATTTGTTTATTGAG
CAAATGAGGTTGACTTATCAAGGATTATAATATTTAGGAAATGGTCAAGG
AAAAGAAGCTGATTTTCACATTTGATGCAACTAAAAAGGCCCGTTTTGGT
GTCCTTCCACGATATGCAAAGAATGAGCTGCTGATTAAATGGTTTGAGCT
CCCAAATTGCTTTATATTTCACAATGGTGAGACACTAAGTTCTTGGTTCA
TTCTGAAGTAAATATGTAACTGTCTTTTAGGGGTTGTAGTTCACAGCACA
CTTCATTTCCTGTCTAATATCACACTCACATATATGTTTGCATGTTGTTT
ATAACGGGATAGTATACCTGTACTCCTGGGATGGTTGGTAAAATGCTTTT
GAAAGTATTCTGATGGACATCATATTCGAGTAACTGATATTCTGTAATAT
AAAAGATGAACTCAAAATTTTATTTCTTGTTCATGCTAGTTTATTTGGAA
TTTTTTTAATTTACTAGAAAAAGATATATGCAATTAATATGTTTTACGAT
ATCTTTTTTAATAAATTAGCATGAAATCACCTCATAAATGGATTTTTCAT
GGCGACGAAGAAAATATTGTAGTTCTGAGGGCGATGATTGTTTGTGTTCA
GTGATATTTTTTATTGTTAAGGTAAACTTTAGTTTGGATACTTTCTCTTA
CCAGCCAACGCTTGGGAAGAAGGAGACGAAGTTGTTCTGATCACTTGCCG
CCTTGAGAATCCAGACTTAGATATGGTTAATGGGAGTATGAAAGAGAAGC
TCGAGAATTTCAACAATGAACTGTAAGGCTCTCTTCTGCATATCTGTATC
TAGATGTATATTGGTAGTATGAATATTAGTTTGTGTTTAGGATAGCTGCT
AGTCTGATACTGACTATATAAATAACTCTCAGGTATGAGATGAGATTCAA
CATGAAGAGTGGTCTAGCTTCACAGAAAAAGCTCTCAGCATCTGCTGTTG
ATTTTCCTCGGATAAATGAGAGCTATACTGGGAGGTATGAAGTGACATTA
GTTATGTTTCATGAAAAATTAATAAATATCAAAGATGATATATAGTTCTA
TATTTCTGATTTCAGTGAATAGTTGGTATAATGTTCAACAAATTACTGCA
GCCTGTTAACATATTTTTTTTTTTAGTTATGATAACATATCGGAGATGCT
TATATGCATCCCCCAGCCAATTGGCCCTGTTTAGAATCTGATTTCCTTAA
ATTGTTTTATTTTAATTCTATTATATTTTTTAAAAGTTTGACACTATCAT
TTGAATTATTTTTGATCAATTTAGGAAACAACGTTATGTTTATGCCACTT
CACTGGACAGCATTGCGAAGGTCACTGGGATTGTCAAATTCGATTTGCAC
ATGGAACCAGAGATCGGGAAAAAGAAGCTGGAAGTTGGAGGAAACATACA
AGGTATCTTTGATCTTGGAGTTGGTAGATTTGGTTCAGAGGCCATTTTTG
TACCTCGCCAGCCAGGCACTACATCTGAAGAAGATGATGGCTACTTGATT
CATTTTTTACATGATGAGAGCACCGGGTAATTGATTGTCCCTCTTATCAA
CATTGTAAATATATCTTCTTTTCTTTCTTTCTTTAAACTGATGTACTGAC
AGATGTTAGGTAGTCTTTGTTTCTCTTGTTGGTAATTTCTATCATAATAA
ATTTACTTCGAGCTCGGCTCGTTTCATGAATGAGCTTACAGTTCACGAAC
CAGATTTGATTACAAATGATTTCGGATGGAAAGCTTGCAACGGCCAAGTG
ATTGTGTAAATCAGATATACGAATCTAGCAATTACTTTAGTTGTTAATTG
AACCATATATATTGCACTATAAAATATATAGTTATTACAACGTTAGAATT
CAAACTTATGTTAATTTTATTTACTTTTCGAATATATTTTTTTATTATGC
TCATAAACAAAGTAAATGAGTAAGCTTGTGAGCAATGTTCATGACTCGTG
AGCAGAAGTTAATGATCAAACTTGTAAGACATGTTCACTAACAGTTTGTG
GACAGTTTTCCTTATGAGTGAATCTCAAGTTTGAAATTTTTTTAAGTAAC
CGAACATGAGCACCCTAGAATTCGGGCTGGTTCTCTTGCAGCCTACCCCT
TTTATAATATCTGATGACAAAGATTTAATGAATTCCTCACATGTCATAGT
ATGCTTATCCTTTCTTTGGCTACATCTGCAGAAAATCTGCCGCAAATATA
ATTGATGCAAAAACAATGTCACCTGATCCTGTTGCAGTTGTTGAATTACC
ACACAGAGTTCCGTATGGGTTCCATGCCTTTTTTGTGACTGAGGTCAGTA
GTTTCATATTTTTCTCATTGAATGATTATTTTGTGGATATAATAATTATA
TATGAATGCTTATAACAAAGTCTCATAATTCAATTTGAAGACATCTAATG
AGATATTGATCCAACCAGCCTGA

Sequence Length:

8323

Sequence Checksum:

3d440a7cae5d8e9277ea667b2fa2c380

View location in JBrowse:

DCARv2_Chr6:13130561..13138883-

Cds:

>DCAR_022385cds ATGGGGGTGACAGAGCACGAGAAAAGCGAGCAAGTTGAGAGAATCAAAGA TGTTGTGATTGTTAATCCCAAGCCAAGCAAAGGATTCACGTCCAAGGCTA TTGATTGGATTGAGAGCTTGATTGTCAAGTTGATGTATGACGCTTCTGTG CCTCATCATTGGCTGGCTGGGAACTTTGCGCCTGTGGATGAGACGCCTCC TGCTCGTGATCTTCCAGTTATTGGCTCTATTCCGGAGTGTCTGAATGGTG AGTTTGTCAGGGTTGGTCCAAATCCAAAATTCTCCCCTGTTGCTGGCTAT CACTGGTACGTCCTTGCTCTCCGGAGCATGATTCATGGATTACGCATCAA AGATGGGAAAGCTACCTATGTCTCCCGCTATGTGAGGACATCTCGTCTAA AGCAAGAAGAGACTTTTGGTGGAGCTAAGTTCATGAAGATTGGAGATCTC AAGGGACTATTTGGATTACTTATGGTCAATATGCAAATGCTCAGAGGAAA GTTGAATGTACTAGATATGTCATATGGAAATGGAACAGCTAACACTGCCA TGATATATCATCATGGAAGACTCTTGGCTCTTTCAGAAGCCGATAAACCA TATGCCATTAAAGTTTTGGAAGATGGAGATCTACAAACTCTTGGATTGTT GGATTATGACAAAAGGCTGACACATTCTTTCACTGCCCATCCAAAGGTCG ACCCATTTACCGGTGAAATGTTTACCTTTGGCTATTCACACACACCTCCA TATATAACATACAGAGTGATTTCCAAGGATGGTGTTATGAATGATCCAGT GCCAATAACATTAGCAGACCCAATAATGATGCACGACTTTGCCATCACTG AAAATTATGCAATTATAATGGACCTGCCGTTATACTTTAAACCCAAGGAA ATGGTCAAGGAAAAGAAGCTGATTTTCACATTTGATGCAACTAAAAAGGC CCGTTTTGGTGTCCTTCCACGATATGCAAAGAATGAGCTGCTGATTAAAT GGTTTGAGCTCCCAAATTGCTTTATATTTCACAATGCCAACGCTTGGGAA GAAGGAGACGAAGTTGTTCTGATCACTTGCCGCCTTGAGAATCCAGACTT AGATATGGTTAATGGGAGTATGAAAGAGAAGCTCGAGAATTTCAACAATG AACTGTATGAGATGAGATTCAACATGAAGAGTGGTCTAGCTTCACAGAAA AAGCTCTCAGCATCTGCTGTTGATTTTCCTCGGATAAATGAGAGCTATAC TGGGAGAAAATCTGCCGCAAATATAATTGATGCAAAAACAATGTCACCTG ATCCTGTTGCAGTTGTTGAATTACCACACAGAGTTCCGTATGGGTTCCAT GCCTTTTTTGTGACTGAGACATCTAATGAGATATTGATCCAACCAGCCTG A

Pep:

>DCAR_022385pep MGVTEHEKSEQVERIKDVVIVNPKPSKGFTSKAIDWIESLIVKLMYDASV PHHWLAGNFAPVDETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGY HWYVLALRSMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDL KGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKP YAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPP YITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKE MVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWE EGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQK KLSASAVDFPRINESYTGRKSAANIIDAKTMSPDPVAVVELPHRVPYGFH AFFVTETSNEILIQPA*

Gene:

CCD1-2