Resource Type:
Genetic Marker
Name:
MK000051 CCD1
Identifier:
MK000051_CCD1
Organism:
Marker Type:
STS-Sanger
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000051 CCD1, is adjacent to primer, NCEDnew117(exon)-F. |
| The genetic_marker, MK000051 CCD1, is adjacent to primer, NCED117(in?)-R2. |
| The genetic_marker, MK000051 CCD1, is located in gene, DCAR_022385. |
| The genetic_marker, MK000051 CCD1, is located in gene, LOC108227427. |
| The marker_locus, CCD1, is an instance of genetic_marker, MK000051 CCD1. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2002 B493×QAL Ver2 QAL | LG03 | 29 | CCD1 | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG03 | 32.8 | CCD1 | MapViewer |
| 2011 B493×QAL QAL | LG06 | 29.9 | CCD1 | MapViewer |
| 2002 B493×QAL Ver2 B493 | LG03 | 20.6 | CCD1 | MapViewer |
| 2011 B493×QAL B493 | LG06 | 20.7 | CCD1 | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG03 | 23.3 | CCD1 | MapViewer |
| 2016 70349 NG full map | Chr6 | 41.401 | CCD1 | MapViewer |
| 2016 Integ NG full map | CH6 | 51.214 | CCD1 | MapViewer |
| 2016 70349 NG bin map | Chr6 | 41.401 | CCD1 | MapViewer |
| 2016 Integ NG bin map | CH6 | 48.114 | CCD1 | MapViewer |
Synonyms:
- MK000051
Sequence Coordinates:
DCARv2_Chr6:13131873..13132888-
View location in JBrowse: