DCAR_023843 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_023843

Identifier:

DCAR_023843.gene

Locus Tag:

DCAR_023843

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_023843, is a part of gene, DCAR_023843.
The genetic_marker, MK001000 GSSR-001, is adjacent to gene, DCAR_023843.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_023843	DCAR_023843.mRNA	mRNA	DCARv2_Chr7:6061641..6071929

Sequence:

ATGGCCACCACTCTCAATCTTCATCTTTTTCCAGCCCAACAATTCCTCCA
ATCCAAGATTCAACACAATAGAAGAAACCCCACTTCCACTTTCACCAAAT
TAAATGGTTTGTAAATACTAATTACTTAAAGCTTAATGTTTATATGTGCA
TATTGTTGTTCATGCTAGCTGTTTTTTTTTTTCAATCAGGGTCTTACAGA
TTTTCTGGAATTAAATGCTCTGTTTCAAATGGGAAGCTGCCTAATTCAAC
TGAGGAAGATGAGGAGGAGGAGAAGAAGAAGAGGATCCGGGCTGAATTGT
CTGCTCGAATTGCTTCTGGAGAATTTACAGTTGAGAAATCAGGGTATGAT
CACACTAATCTTTTTTCGACCGTTAACTGCTATGTTGAGCTACAATTAGT
ACACTTGCAATTAACTATATGATATAATTGTGTCATAGAGGTATGATTTT
AGTACTAAGCTTTTGGACCATTTTATTAGAATATCAAAGAATTGTAGCTC
CAAGTTAAAAGCAACCTATAAAATAGATCATAATTTATTTTGTTTAGCTT
ATTTTCCCTTCCGAGAATTGTATTGGGAGGCTAATTGGCAAAAGATAACT
TGGAGGCTAATTGGCAAAACAGAACTTTAAGTACTTAGTTTCCTCAATTC
ATTAGTATTACAATGCAATTCATATTTTTATCCTTGTATCTTTGTGCTGG
ACTTAGTTTCCAGTCACAGTTGTTGGACGGTTTGGCAAAATTGGGGGCTC
CCAGTGAGGTACTCGATGTCTTATCTAAGTGGATTGGTGCCAGTGAAGAC
TATCCAAAGATTCCAGAGGCAAAAGGAGCTATTAGTGCTATTAGAAGCGA
AGCCTTTTTCATCCCTCTGTATGAGCTTTACCTCACTTACGGTGGAGTTT
TTAGATTGACATTTGGTCCAAAGGTCTGAGTTTCTTAGCTATCTCGTATT
TCTTGGGTTTGCGTTCTAATTTTTTTGACACTTGAAACTTCAAATTGTGG
AGAGTTCTTCTTGCTAAAAATAGAGTTTTGTATATTATTTTGCAGTCCTT
TTTGATAGTTTCTGATCCTACTGTAGCCAAGCACATATTAAGGGATAACT
CTAAGGCTTATTCAAAAGTAAGGCACATTTACGATTTTTGATTTTTCCCT
CTTTAATGCATTAGTTTGTTTAAATTCAAAAGATAAGTATTCGAGAAAAT
TAATAAGTCATCCAAAAGGTTGCAACCAACATTGAACACCAAAGTCAATT
CTTGATAATCTATTTCTACAGGGTATCTTGGCAGAAATCTTAGAGTTTGT
AATGGGTAAAGGACTTATCCCAGCTGATGGGGAAATATGGCGTGTTAGAC
GACGTGCTATAGTCCCCGCATTGCATCAGAAAGTATGGTAGTGTTCTGTG
GTATACTCCACTTTTAAAAGATAAACTTTTGTTTATATCTTTACAATATG
TTGCCTTTACAGTATGTAACTGCAATGATAAGCATGTTTGGACAAGCAAC
AGATCGCTTGTGCGCAAAGCTGGATGCTGCTGCATCTGATGCAGAGGATG
TGGAGATGGAGTCACTTTTTTCCCGTCTAACTTTGGATATTATTGGAAAA
GCTGTCTTCAATTATGACTTTGACTCTTTAACAAATGATACTGGAATAGT
AGAGGTGCGTTTCTATTATCAGAAGATGTCTGTTAGTTTAGTGGTGTCGT
AACTTATCTGCTTAACAAAAAAAGGAGTAAGCTATCATATCTGAAAAAAC
AAAAATCTAACTTGATCAAAGTTTGGCTGACGGTGCTTTCGGATGTGTTA
ATGCATAAAATGTATGAAGTAGGCTGTATACACCGTCCTGCGGGAAGCGG
AAGATAGAAGTGTTTCCCCAATCCCATTCTGGGAAATTCCCATTTGGAAA
GACATTTCGCCAAAGCTTAAAAAGGTGAATTCAGCGCTCGAGTTGATAAA
TGGAACACTGGATGATCTTATTGCCATATGTAAGGTAAGGCGCCAGATTA
AAAAAATTTGATCAACTTTTGTCAGTTCTTTTTTTGTCTCTTCTACCATT
GCTGAGACAGAGATTAGGCAAACATGCCTAATATATGCTACAAATTAGGC
AGGTAACTGTCAGTTAGTTCGACCTGACTACTCATTATCTATGAGCCACA
AATCCTTGCAATACCACAACAGCCAAAAGCAGTTATAGGCAACCACATCC
CAGCATACAAACATAAGTTTTCCGTTCATGTATCCAGATACTATAAAATA
TGATATCAAAGTAATTATAACTGGCAAGTTTAGAACTTTGAAATACTAGG
CAAAAAATGAGATCATGTAATGCTGGGAATATGCCTGGAAACATATTGTT
AGGAGAAATATAAAGACAAAAATCAATAGTGGACTTGAATTACACACAGG
TAGGAGCATACTATATGTCGTTACAGTAGGCAAAAGTAGCATTAAAAATA
AAATGGTATATCAGTATATCTCAGCCGTTGTTATTTAAAATTTATAGCGC
CAATGTCAGTTTTGACCAGATTTTATAAGCAGATATACGTATAGAAAGTA
ATTGTGTAATTTACAAGCCACAACCAAATTTCATTTTCTTGCACTCCTTA
GAACACAGCTTGTCCTTTCTATTTCCTTTCTTTCATTCTACTTGGCCTTG
CGCGTGGCATTTCATGTTACCTTTTGCATTCCCTTGTAAGCATGTTTTAT
TAATTAGTTTATCAATTTAATCACTAAAAGTAGCTCTCACCTGCAATTAC
TTTTTAAGGAATTCTTTACATCATTATCTCGAATAATCTGGTAAGAGCAA
GGATTAAATTACAAATTTTGTCTACCCCACAGCCATAATTTTTGAATAAA
TTTTATCCAGTTCCTTTCCACGTTGCACATGCTTCTTTTTCTGTCATCAT
TTTAATATATATCTGTCATATGTATCTGCAGAGAATGGTAGATGAAGAAG
AGTTACAATTTCACGAAGAATACATGAATGAAACAGATCCTACTATCCTA
GTATTCTCCATTTTTTGTTGGCATCTGGAGATGACGTATGAGATAATTAT
TTATCTATTATTAGTGTTTTTAGTAATGCTATTACCGTAATATAATAAGT
TCAGCAATACTTTGCAGGTCTCAAGTAAGCAGCTCCGTGATGATCTGATG
ACAATGCTTATAGCTGGACATGAAACAACTGCTGCAGTGTTGACATGGAC
TTTTTATCTTCTTTCCAAGGTGTGGATTGGCCTGCTAAATATATGTTTAG
TTAGCAAAAGAAACAGAATTAATCTATGCTTTTTACTTGTATAGAAATTG
TAATTATGTAGTATTAGATAAAGTACATCATAAATGACTGATATTTATTT
CAGGAACATATACAGATTTTCTTTTTAAAAAATAGCTTGTCCTAGTCTCC
TAGTAAGCATATTAATGGATATGTTAACTCATAAGCTCAGATGCTTCTGT
CTTTATTTAGTAGAGTTTTTTACTTGAAGTTCTAGAGCTTGTCCTGTCTT
AGGTATTCAATTTACTCACTATTTTGGAATTTTGGTTGCAGGAACCTAGT
GTCATGTTGAAGCTTCAAAATGAGGTAAACTAAAAAATCTATAAGGATAA
TATCAGTGATAGAACAAAATATTTTGGAATTTACCTCAGGTAAAGAGATA
TAGGGACTCAGCAGTATTGGGCATTCTGAATCTGCAGTTGCACCTTAAGC
ATTAACAATTTATTTTTTGTTGCTGATTATTGTATAATAAAACTTAAACT
GGGGGGGGGGGGGGGGGGGCCCAAAATTATAAAAGAGAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACAATTGTA
AATGCAGGAATTCTGACATGCATCTTTTATGAGTTTGCTAATTTGCTCAG
ATACCATGGATCCTTTGACTATTTAATATATCTCACCTTTTAATTTAATA
ATTTCTGTTTATAGGTTGATTCAGTTTTAGGGGATAGAATTCCGACCATT
GAAGACATGAAGAAACTTAAGTATACAACTCGAGTGATCAATGAAGTAAG
AAGAGGCACACTGTTTCTTTGTGACTTTATATTAAGTATTACTTGTGTAG
TTATGTTATGTTTATCTTTACTTGTTTGTTTCTCAATTTGTTTCCAGTCA
TTGAGGCTCTACCCACAACCACCGGTTCTGATCCGACGCTCTCTTGAAGA
TGACAAACTTGGCGAGTACCCAATAAAAAGGTTGGATACACACACACACA
CACACAGGGTTGCACTCCACAAAGAACACCTTAAGAAAGGAACAATAAAT
AACACTATCATACTACTTTATTTTTTTATAAAAAATAATTTGTTAAGATT
ATAATTGTAGTTAAACACCAATTAAACTTAGTATAAGAAATCTAACATCT
AAGCTCATCTAAATTATTAATATGAAATATTATGAAATCCAGAATAAAAT
CATATGCATATATTTTACACGATGAATTTTACGTAGAATCATGTTATGTC
ATATCCATATTTATTGTTAAGCATGTTAGATGCTATTATTATTCAAGATG
AAAGGTAAATTAACTGAAAATTAGAATTTAATTCAAATTTCAGATGAGAT
TCTATATGAGATTTTATAGTGTTCTTTGTTCTTTTAAGGGTGTTCTTCTT
TGAGCAATGACACACACACAGACACACAGACACACACACACACACATATA
ATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATA
TATATATATATATATAATAGAGAAAAGTTGTATTAGTAATGCATAGTGCC
TAGAAATGTATAAGACGTTTATTAATTTAAAGACTCTAATACCATGTAAT
GTGAGAAGATCATTAGAATTAGAAAGATTAAATGATTAAAGTGCTAGACA
GGCAAAACCTTAAGTACACATAAATTGAATATTTTATTTCCTTGCTCTAC
ATTTGTGTCCATACTCCATATTTGGTGTTGAAGGTTGTAGTTGAATATTT
AAGTTGCAACAGAGCTTCCTTTCTTTTTTCAGTTATTTCTTGCCTTATAG
AATTTGTTTAAACCATTAACACAACATTACTTGTTGACAGGAATGAAGAT
ATATTCATTTCAATCTGGAACTTACATCGCTGTCCTCAAAGGTGGGAAGA
TGCAGATAAATTTAATCCTGAAAGGTGGCCTTTAGATGGACCCAACCCAA
ATGAGACCAACCAGGCTTTTAGGTTTGATATCTATTTTGTTTGGCTTAGA
TTGTTGAAGCTTATTTTAACATGGCATGCACTGTTTTATTTTATATTGGC
AAAGAGTATGCATCATCGCATTTAGTAAACCAACAAAAAATGCAACTCGT
AAAATAATACGCAGAATATTTCCATGTCAACACAATCAGATGTTTCTGTC
ATAATGTAGTGAAAGGCAATGTGCACCACTATTTGACACCACTTGATATT
CAATACTTTGTGTATTTGTATTTTGCAATATGTGCATGTGTTCAGAGAGA
CAAAATACCTTTGCAGTGTTATACTTATAGTGGACCCATACAAAATGCAT
CCCTATTAGAAATCCAGACATGGAAGTGTTAGAAATCAAACTTAGCATCT
AAAGTGCAGAAGGATTTAACTTATTTGTTCAAAAATGCATTTTACCTGTC
AGAATGTACTAGCTTATAGCCCGGGCGATTATGTATTTTTTTACAATGTG
TTGTAATATATAATTTTGTATTGATAATACATTTATGCTAGAATAATGTG
CGTCTTTTAATTAAAATAGGTTTTTTAAATGATTAATAGACATGTTTAAA
TTAATATATTTTTATTGGGCATATAAAATAATAATTAAGCCCGTCAAAAG
ATTTTTGAACAAATAATTCTGAGAGATGTGTTTTAATGAGGGTGTTCAAA
TTTGTTTTAGTCATAATAACGAGGATGTTCAAATATGTTCTAGATATAAT
AAAAGGACTCATTGAAACATGTTATATATAAAGAGGCCTGTAAACTGGCC
CAAGTTTCGACTGACTACCAAATTAATTAAGCCCGTCAAAATATTTTTAT
GTAAATAGGCGTGTTTTAATGAGGATGTTCATATATGTTTAACATGTTAT
AAAATGTCATTTAAATAAAAAGGCCCATATACCTGTCCAGGTACCAATCG
ACCAAAACTTTCAATCTTTCAACTTTAAAAGTGTAGTATAGATATTCCCC
GCATTAAAGCCTGAGTAAACATGCAGATTTTATGAGAGGCTCGCAAAAAG
TACTGATATTGAATACTTTGACATGAAATGTTTAGTGCCTTTAAGGCTCA
TATTGAATACACCTAGCCATCTGTTGTTAAATGACAATTTGCATATCATC
TTGATGTTTAACTCCCAGAAATATGTTCACTTATACATTTTAGGTCCCCA
TTAAGCTCTACATCTCTGATTCCCCATCAGGAATGACAAGGAACAGAAAC
CTATTATCTTGCACATCAGAAAGCAAAGATTATGAATCTCCAAGCCAAAA
TATCCTGTTTCATATATACATATATATGCATACCTGTGAAAACTTTTCCT
CTATATACTCAGAACCTACTTCCACTTATGAAGTTTGCATGTCAGCATTA
GGAGTTACACGCTGATTGCTGCATATCTTGGTTTGTCCGTGAAGAAATAC
TCAAATATGTACCTTAAAAGCACAAGTATTATAGTTTTCTCCTTTAAGGA
GCCAACCATAAGGGTTCCAGCACATTTTTTCTTTCTCAGATGATCTTTTA
ACCTGCTAAAAAAAGATAGCACACACTGAAGTTATCGTTGTTCTTGGTCC
AAAGCTGTACACAACAAAGCCTCCTATTATATTTTATGTGAGTCCTAGTC
TGTCCTTCAATTCACACATCTTCCAAATATGCTTCAAATTTCTGAAATAG
TGAAGATGACAAATCTAGTACAAATACTCTTGAGGTTACTTTTTGGTTCT
TGTTTGCTTGCTTCTTGTTTTTCCCTCCTTGTTTTAAGGTGTTCTTTACA
TATGTGTATTAAAAAATTAAGTTCGTTCATGGAGGGCACTGCTTGTTGAG
CTATAATGCCTTGTTTGTTCTTCCACTAAAAGTCTTTAACTTCTTGTACC
TTTTATTGAAAATTTAAAATAGAGATTATACACTTTGAAAGGAACTACCT
TTCATATACATATTTAAGTTGATGTAATCACTGCAGACTGCCAATCATTA
AATTCCATATGTTGCTTGTTTAACAGGTAGAGAACTTTGTTATCAGCCTG
AAACAAATGTCAATTAAAAAGTTTCCAGATTAAATTAATAACGTTCACGG
GGGCTAGTGTAGAAGTTAATATATATATATATATATATATATATATATAT
ATATATATATTATTGATATGGTTGTTGCATAATTTATGATGGTGTTTGCC
TTCTCAAGTTGATGACGGCATAGTAGTGGCCCTTAAAAATCTTGCTCTGC
TCTGTTCCTAATTCGTATACACAATAATGGTTGTCATGTTTATGCTGCCA
TATTTTTTAACATTTGGTTCAATGTTCCAGCTATTTACCCTTTGGTGGAG
GACCAAGGAAGTGTGTAGGGGACATGTTTGCATCATTTGAGGTGAATAAG
ACTACAGTCATTTGAGTAGTTCCATATGATTACTTGTTAAACTGATATAA
GTGTTTCATAGTTCCCACCATTTATTTTGCAAGATGTCATTTTTCGAGTA
TTATATTTCAGTTATCATAGACAATGCCATGACACTATATCATCTACAGG
CTATAGTAGCAGTTGCAATGCTTGTTCGTCGATTTAACTTCCAAATGGCA
CTTGGCGCTCCTCCTGTAAGTTCTATTACCAGCTGAAGTCATATGGATAT
TTTTTGTGTAAATCTGGAATTCTATATTATAATTATTGCTCAGCTGGTCT
GTTTTTTAGTAAATTTGAACTAGTACGAAGGGGCTTAATAGGTCAGTAAC
ATATAAGGCTATAACTGGTTCTTACTTACAGCTGAGTTTAGGTTATGAAT
GAACTCTCGACAATATAGTACAACTAGTTCTGGGATGTATTTTCATATAT
CTTTAGTGGTGAGATAAAGCTATACTACACCTATATTTCCATATGTATTA
TTTAGAAACTGATTATATCTACCCTAAAGAGAAAAACGAGGTTGCCGTTT
TGGGATATTTTCAATAATCCAATATTGCAAAGAAAGAAAAAAAATTCCTT
TCCATAATTCCACTCTGAAATGTCTCGCTCTCTGTAAGATGTCTCTTGGA
GCAAAGTATAAATATTACTTCTTCTAAACCTCACTCACCTTGTTTGCTAC
TCCCTCCGTCCCTCTGGGATGTATACGTTTGAAATGGACACGGAGACTAA
GAAAAATGTATAAAGTAGTGTAAATTAATGAGAAAGAGAAAGAAAAATAG
GTAAAGTGGCGGGACCCATGAATATTTAATTGATAGATTTGAAAAAGTAG
ATGGAAGTAGTGGGTGAGTGGAATTTTTATATTATAAAAGTTTACTATTT
TGGGAAAGTTTTGAAATGTATAGAATTAAATGGGACATCCCGAAAAGGAA
AGTGTATAGAAATCAGAGGGACGGAGGGAGTACTTCCATAGAGTATTTGC
TCTCTCCTTTATTCAGGTTTATCCTTTGAACTTCAATTCCCTCTCTCTAG
AACTCTTGACTTGTGTCTATACAGCCTGATTGTAATTTTACCATTTCGTC
ATGATTGTTTGAAGGATTTATAATCCTGGATTATTATCTTATTTATATCT
AACGTCAAGGATTATAATCCCACGGATTCATATTTCAATCATTGTTTTAG
TTAATTTTCATGGGATTATCATACCTTGTGAGAGAAGGTATTATAATCAA
TAAAAATGACTCAAAAAAGTGATTGTAATACAATTCGATGAGAATATAAT
CCTTTAAATTTGGAGAAAATAATGTAGTTATCCGGGGAATATAATCCCTT
CAAACAAACATGGCCTTTGTGTATTTATAGTATACTCATATCTGAAATGA
GAAGAGCTAAACTTTCTTATTTAAAAAGGTATCTGTTCCTGATTTTGTAG
TGATATATTAGTCCAGAAAATAAATACAAAGCTACAAACATAGTGGTGAT
TGATAGAAAAAATTAGTCTAATTATCAGTCACAAGTCTGAAACAAATGTA
CTCCTATTTCTATGCAACTATCTTATAGAATGACATAAAATTCGGTGCAT
ATTAGGTGAAAATGACTACAGGGGCAACCATACACACAACAGAAGGGTTG
AATATGACAGTTACAAAAAGAATAACACCTCCAGCAGTTACAGCAGAGAC
ATCGTCGTTGAAAGATGATTCCTCCGTAAACATGAGTAGAGAGGCTGTAG
CTGATCAGAAAGGTGAAGTTTCTGTAGCACGGACTTAG

Sequence Length:

10288

Sequence Checksum:

1dcd460818e83df54a43d2f1eddde0b0

View location in JBrowse:

DCARv2_Chr7:6061642..6071929-

Cds:

>DCAR_023843cds ATGGCCACCACTCTCAATCTTCATCTTTTTCCAGCCCAACAATTCCTCCA ATCCAAGATTCAACACAATAGAAGAAACCCCACTTCCACTTTCACCAAAT TAAATGGGTCTTACAGATTTTCTGGAATTAAATGCTCTGTTTCAAATGGG AAGCTGCCTAATTCAACTGAGGAAGATGAGGAGGAGGAGAAGAAGAAGAG GATCCGGGCTGAATTGTCTGCTCGAATTGCTTCTGGAGAATTTACAGTTG AGAAATCAGGTTTCCAGTCACAGTTGTTGGACGGTTTGGCAAAATTGGGG GCTCCCAGTGAGGTACTCGATGTCTTATCTAAGTGGATTGGTGCCAGTGA AGACTATCCAAAGATTCCAGAGGCAAAAGGAGCTATTAGTGCTATTAGAA GCGAAGCCTTTTTCATCCCTCTGTATGAGCTTTACCTCACTTACGGTGGA GTTTTTAGATTGACATTTGGTCCAAAGTCCTTTTTGATAGTTTCTGATCC TACTGTAGCCAAGCACATATTAAGGGATAACTCTAAGGCTTATTCAAAAG GTATCTTGGCAGAAATCTTAGAGTTTGTAATGGGTAAAGGACTTATCCCA GCTGATGGGGAAATATGGCGTGTTAGACGACGTGCTATAGTCCCCGCATT GCATCAGAAATATGTAACTGCAATGATAAGCATGTTTGGACAAGCAACAG ATCGCTTGTGCGCAAAGCTGGATGCTGCTGCATCTGATGCAGAGGATGTG GAGATGGAGTCACTTTTTTCCCGTCTAACTTTGGATATTATTGGAAAAGC TGTCTTCAATTATGACTTTGACTCTTTAACAAATGATACTGGAATAGTAG AGGCTGTATACACCGTCCTGCGGGAAGCGGAAGATAGAAGTGTTTCCCCA ATCCCATTCTGGGAAATTCCCATTTGGAAAGACATTTCGCCAAAGCTTAA AAAGGTGAATTCAGCGCTCGAGTTGATAAATGGAACACTGGATGATCTTA TTGCCATATGTAAGAGAATGGTAGATGAAGAAGAGTTACAATTTCACGAA GAATACATGAATGAAACAGATCCTACTATCCTAGTCTCAAGTAAGCAGCT CCGTGATGATCTGATGACAATGCTTATAGCTGGACATGAAACAACTGCTG CAGTGTTGACATGGACTTTTTATCTTCTTTCCAAGGAACCTAGTGTCATG TTGAAGCTTCAAAATGAGGTTGATTCAGTTTTAGGGGATAGAATTCCGAC CATTGAAGACATGAAGAAACTTAAGTATACAACTCGAGTGATCAATGAAT CATTGAGGCTCTACCCACAACCACCGGTTCTGATCCGACGCTCTCTTGAA GATGACAAACTTGGCGAGTACCCAATAAAAAGGAATGAAGATATATTCAT TTCAATCTGGAACTTACATCGCTGTCCTCAAAGGTGGGAAGATGCAGATA AATTTAATCCTGAAAGGTGGCCTTTAGATGGACCCAACCCAAATGAGACC AACCAGGCTTTTAGCTATTTACCCTTTGGTGGAGGACCAAGGAAGTGTGT AGGGGACATGTTTGCATCATTTGAGGCTATAGTAGCAGTTGCAATGCTTG TTCGTCGATTTAACTTCCAAATGGCACTTGGCGCTCCTCCTGTGAAAATG ACTACAGGGGCAACCATACACACAACAGAAGGGTTGAATATGACAGTTAC AAAAAGAATAACACCTCCAGCAGTTACAGCAGAGACATCGTCGTTGAAAG ATGATTCCTCCGTAAACATGAGTAGAGAGGCTGTAGCTGATCAGAAAGGT GAAGTTTCTGTAGCACGGACTTAG

Pep:

>DCAR_023843pep MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNG KLPNSTEEDEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLG APSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGG VFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIP ADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDV EMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSP IPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHE EYMNETDPTILVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVM LKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLE DDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNET NQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKM TTGATIHTTEGLNMTVTKRITPPAVTAETSSLKDDSSVNMSREAVADQKG EVSVART*