Resource Type:
Genetic Marker
Name:
MK001000 GSSR-001
Identifier:
MK001000_GSSR_001
Organism:
Marker Type:
SSR
Publication:
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001000 GSSR-001, is adjacent to primer, GSSR-1-F. |
| The genetic_marker, MK001000 GSSR-001, is adjacent to primer, GSSR-1-R. |
| The genetic_marker, MK001000 GSSR-001, is adjacent to gene, DCAR_023843. |
| The genetic_marker, MK001000 GSSR-001, is located in gene, LOC108193554. |
| The marker_locus, GSSR-001, is an instance of genetic_marker, MK001000 GSSR-001. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Fig_3.5 | Chr7 | 20.929 | GSSR-001 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1F3 | Chr7 | 0 | GSSR-001 | MapViewer |
| 2015 MB Merged | Chr7 | 20.929 | GSSR-001 | MapViewer |
| 2015 SFF×HM2 | Chr7 | 0 | GSSR-001 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr7 | 20.929 | GSSR-001 | MapViewer |
| 2011 B493×QAL QAL | LG07 | 32.7 | GSSR-001 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr7 | 0 | GSSR-001 | MapViewer |
Synonyms:
- MK001000
Sequence Coordinates:
DCARv2_Chr7:6071839..6072131-
View location in JBrowse:
Sequence:
ACCCAGCCAACGTCTCCAAATGATAGCCAATAAAACCAAACATAAAGAAG
AGAATCTTGGACGGTTGAGGTTTCGCAGATTCCAAACTGTCTGCTAGCCT
CTCTCTATCCTTCTCTCCTATGTTGCATGTTACTTACAACATATACACTG
TGTCTGTGTTTTAAAATTCATTTTCTTCTCAAACAAAACACACACACACA
CACACAATGGCCACCACTCTCAATCTTCATCGTTTTCCAGCCCAACAATT
CCTCCAATCCAAGATTCAACCCAATAGAAGAAACCCCACTTCCACTTTCA
CCAAATTAAGTGGTTTGTAAATACTACTTACTTAAAGCTTAATGTTTATA
TGTGCATATTGTTCTCCCCCCCGTTTTTTTTTTCTTTCAATCAGGGTCCT
ACAGATTTTCTGGAATTAAATGCTCTGTGTCAAATGGGAAGCTGCCTAAC
TCAACTGAGGAAGATGAGGAGGAGGAGAAGAAGAAGAGGATCCGGGCTGA
ATTGTCTGCTCGAATT
Sequences:
>MK001000_GSSR_001 ID=MK001000_GSSR_001; Name=MK001000 GSSR-001; organism=Daucus carota; type=genetic_marker
ACCCAGCCAACGTCTCCAAATGATAGCCAATAAAACCAAACATAAAGAAG
AGAATCTTGGACGGTTGAGGTTTCGCAGATTCCAAACTGTCTGCTAGCCT
CTCTCTATCCTTCTCTCCTATGTTGCATGTTACTTACAACATATACACTG
TGTCTGTGTTTTAAAATTCATTTTCTTCTCAAACAAAACACACACACACA
CACACAATGGCCACCACTCTCAATCTTCATCGTTTTCCAGCCCAACAATT
CCTCCAATCCAAGATTCAACCCAATAGAAGAAACCCCACTTCCACTTTCA
CCAAATTAAGTGGTTTGTAAATACTACTTACTTAAAGCTTAATGTTTATA
TGTGCATATTGTTCTCCCCCCCGTTTTTTTTTTCTTTCAATCAGGGTCCT
ACAGATTTTCTGGAATTAAATGCTCTGTGTCAAATGGGAAGCTGCCTAAC
TCAACTGAGGAAGATGAGGAGGAGGAGAAGAAGAAGAGGATCCGGGCTGA
ATTGTCTGCTCGAATT
This is the primary representative sequence for this feature.
Sequence Length:
516