Resource Type:
Gene
Organism:
Name:
DCAR_028247
Identifier:
DCAR_028247.gene
Locus Tag:
DCAR_028247
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_028247, is a part of gene, DCAR_028247. |
| The genetic_marker, MK001129 GSSR-130, is located in gene, DCAR_028247. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_028247 | DCAR_028247.mRNA | mRNA | DCARv2_Chr8:10235189..10251098 |
Sequence:
ATGGAAGCTGTGGACCTTTCTTTGCATGTGCTCGATAACAGCGTCGCAGA
GGATCCTGTCCCAGTGGACTCTGTTTTGGGCTCCAATTGTGATGTAATTG
AGGCTAGCAAGGATGGTGATGAGGGGAATGAGGGGCTGGTGGATCCTGGT
TGTAGCCCGGCCGGAATTGCAATGCAGGTTCCGGGATCTCCGCGGCTGAG
TCCGCTGCTTCATTCGTGTGATTCTGATTCTGATTTGTCGAGGAAGCGGA
AGGCGGATGAGGGGGAAATGTGTGTGGGGATTGAATTTGAATTGGATCAG
TTGGAGGGAATTGCGGTTGAGAGAGAAAGTGAGGGGATTGTTTCGGGTGG
GGTTTCGGGTTGTGTTTCGAGTGGAAGGGTTTTGAGATCGAGGAAAGTGG
AAATGTCTCCTGCATTGACTCAGTCTAGGGAGAGGAGAACACAGGGGAGG
AAGGGAATTGAGGATGGATTGGTTTCGAGTAGTGGCAAGGTTTTGAGATC
AGGGAAAGTGGCGGTGTCCACGGTGGGTTTGAAGAGAGATGATGAAGATG
AGAGTGGTTTGATTGAATTTGGTGATGATCAAGAGGGGAGACAGACACCG
GTGAAGGTGAATAATAGGCCCAAGGCAGGGAACGGTAAGGGGTCTGATTC
GTCGAGTAGCAAGGCGCACAAGCAGAAGTCTGTTGCGTTTTTTGTTGGGG
AGCCTGTTCCGGATGTGGAAGCAAGGGAGAAGTGGAATTGGCGATATCAA
CTCAAGGTGATTCATTTATTTTGTGATGGGGTTTGTCCTGTTTAGAATTG
CATGTGTGCATCTTGATGTGTTCCATTGGTGACTTTAATGAATCTAACAT
CATGTTTAATCGTTGAAACAAATATTTTCCAAATTATTGAATCTTGAATT
TTTTAAGAGAATCATGCTATATAATACTTCCATCGTATTGTCATTGAAAA
TACTCAAGTGTATAATCTCTGGTTTGTGGGTGGTAATAAACCAAACAAAT
GTTCTAAACTCACAGAAAACCCGTAATGTCTTCCGAACACTTGTAACTTA
AGATTGGGATTAGGGATCACAGTCTGCACACTACCTGTGGATTCTGAACC
TAACTTAGTTGACCAGATAACGGTATGCAGCGGGTACTAGATATAAAAAA
TGTGCATGTGGGTCGGTTAAGGATTATTTTGTCTCGCACCCTTTTCCTGG
ATCAAAGGGTTGGCTTATACAAAAACTTGGTTCAAGGGTTTTTGTTTACT
TTCCATACTAGTTTAAGGGTCATATTGTATATATTGTCCCAATTTTGCTA
TATAAAGGTGACCAGGTAAGAACTTCATAAATTAAAAATCTCTTCTTTTC
CAAAAAATTGGCAGCCCAATCTTGATAGGCTCTTGTATAGTCAATGATTT
TTTAACTGACCTGTTGAAAAATACTCATATTTCACTAGTAAACTTACTTG
CAGCTTGTAATTGATGTGTGCACCAATAACCTGAGAGTACACCTACGTAT
TACGTTAAGGGACCCTTTTGTATTTTATGTAACGTTGGTAATCGGCAGTT
TAATCTTTTGATGCCATATAAAATGTTATTTCTAGAATGTTATTCTTTAT
TTATTTATTTAGCCAAAGCGATTAGATTGTGACTGTGTGAATGTAACGTA
ATTTACAGGATCAAAGACGCAAGGGCCAAGGCTGGATTTTAAAGTGTGTG
ATACTCTACAGGCTTGCATCCTGTCTTAATTTTTTTTAAAGATTTCTTAC
ATTCCCAGTGCTCCAGCTGCTGCTAAACTTGAGCCTTTTTTCACTTATGC
AGCGCTAATGAGGAGGACGAAATAATTTTGAATGTGGAGTGCCACTACAG
TCGAGCCAAAGTTGGTAGCTGTGTTTTTAATATTGGAGATTGCGCTTTTA
TAAAGGTAGCAGTACCTTTTAGATTGACCATTAACTACAGGGTCTTAACA
TATAATTGTTAAACATGGAACCACAGAAGGTCCTCTCACCAACTCCTCTA
CTCCTCTCTTAAACCATTGGAGAGCTGATGCAGGAGAAGAATAAAAAAAA
AATATAGAATAAAACGTGTCCTCCATCAAGAGCCCTACTTTATCTATATT
TAAAGGTTCTTATACCTATATACCGTCAAGTTACTTGTTACACATTATAT
TAAATGAGATAAGCTGAACTTGCCACCAGTGAAATTTGCAGTACCTTGTC
AGTGATATTCTCTCGTAACTGTTCCATTCTTAATCTTCTCTTGAGCACGG
CAATGACAATATACATATTTATGCATGGCCATGTATATAGCCACAATACT
ATCATTAGGCAATTTTACCAGAGACTTTTATGCATATAACACCTTAGAAA
GCTGTTTAAGCCAAAGTGAAGAAGCTAGCATGTTGTAGGACTATAATGCA
GTTCTATGACTTTTAAATGTGTCATTTCTAACTTTCCGGTAGTTCAAATT
TTAACTTACAAGCACATAATAGTTGGTATTGGATCGTAGATCAGAAGGCA
AATCTGCCCGATCATTATCTATACAATGTCTTGGCTAATCAAACATGGGG
TATGCGAACTAACCATACAGATTACATAATGTTGCTAAACTTGCTGCTCC
TCCGTTGACATGTTTTAGTCACTAGGTCAACAGTTTAGTCCCTTGTTTTT
ACATCTTTGCAAATAAATGAACAATTTTTTATTGGTCTCCCTTTTGCACA
CGATTAGATCCGAAGTCTTCACTTACCAAACAGGTGCCCATATAAGTCTA
TGTCGCACGGTGTCAAATTACACAAACTAGCTTTTGCATATTAAATTTTC
TTAGTCCTAATGTCTTATCTCACTTCATCTCAATTTTCATGTGACCGGAC
ATCAGTTGAAGTATGCACACCTCTTCTGTATAGGAGCCCAACATTCCATC
CCATAAAGTAGCATCTACCTAATAATAGTTCTATAGAAGCTTACTTTCTA
AGCCTAGAACTGTGGTGTCACTTCGCCATTTCACCCAGATGCCTGAACTC
TGTGGTCAACATCACTGTGTATCTCTCTGTTGTTTTAAAGAATGGATCCT
CTGTAAAATAATTGGTTGTTCATTGTGATTTCTTCTCCCTCAAGTGTCAC
ATTATTGAATTTGTATTCCACGTACTCTTTTTGGTTCATCTGCGTCGTAA
CCCCTCTTGTGATCTTGTCCAAGGGTTTGTCACCATTATTCCAATTTGGC
GTCAACTCTTGTTCTTTATTTATTTATAGAAATAAAGCAGTCATGAAATA
ATTTAGTACTTAAGGAAATAATTATCCATGGATCATAAAAGCTTTGGTGG
CACCTGAGAAACAGCTGTCATCAACAAGTTCTACGTTCTTGCGCAAACTT
TACAATTCCATTTTCATATAATCTACCTAAACTTTATGATTCCGTTTTCA
TATGATTTACCTAATTCTTATTCTGGACAGAATTATTATTAAGTACCATT
TATTTTTTAATTGTTATAAAAATTGATACACAAATCACAAGATTAGGCAA
TCTCTTCAGGGTGACGGAAAGGAAAAGCATGTTGGCAGGATATTAGAGTT
CTTCAGGACAACAGAGAATGATGATTATTTTAGAGTTCAGTGGTTTTATA
AAGCTGGGGATACTGTGAGTATCTGCATTTTGTATCCCTTCATCACTATC
TACACTTTTCGAGATAATCAGCATTTAATCAAAATTATTGATTCCTTCAT
ATTTCTTTTCCCAGGTTATGAAGGATATGGCTTCTTTCCATGACAAAAAA
CGTTTATTTTATTCAACTTTAGAGAATGACAATCCATTAGACTGCTTAAT
TTCCAAAGTCAATGTTATAGAAATAACAAGAGAGGTAGGGTTCGCTGTTT
CTTTCTATTCACATGTACCCTTTCCCCCCCTCCATTACATTCTGTAGATG
TTCTTAAAGCTTTAAAGTAGGTTTCCTCTTGTCCTTTTGCTTGAGTTTGT
GTATTATGAATATTAACTACTTTATTCTTTGACTGTTGCAGCCAGGTTTT
CAATTAAACGCTAACCAGTCAACGTGCTTCTATTATGACATGGAGTACTG
TATTGAATATTCAACTTTCAGAAATTTATTGACCGGTAATAGTGTACACC
AATATACGTTATTAAGCATTTTCCTAGGATAATGGTCAAATTTTAAATGG
AACTTCATCTTAGAGATACTGTGAAGAACTTTTAGTATGGAAGTTGTATC
AATTCAAACATCTATGTACAGGAGCAGTGTGTCATTCAAAAGAGTAAGAT
ACAATTGTAAAAATCATACAGGTTAAAACCCTAATTATTGAAGTTGGGGT
AGATTACTCAACAAGAGCATGCAGTATGTAAGAATTTGGATACATAGATA
AATCAGTAATCTAATGGACTAATCTGCTAAAACTTGTAGTTAATTTCTTT
GTAAACTGTTTGCTAGGCGACCATTTGCGCTTGTATAGGTATAATGTTGA
ATTTGGTCACGACCCTTTAGTCGCTTGCGGAATTGTAATATTTTCCTCGC
CAACAGTATCATATTTAACTCCATAGTCCTCCAATGCAATTTTATATTCA
AGTACAATTATAGCACTGTTCATGTTAGTGTATTACTCGTATATATTATC
ATATAACTTGTCAATGCCAAAATAATTCGATACCTTTTAGTTCAGAAAGG
GAACAAGTAGGTTGACAAAGTTGCAGCGATGTCGAGAAAGATACTACTTG
CAACCATATATATATATTTTTAAATTTCTTTGTTATTAAAGCTAGAATTG
AGTGCAACTCTGAAAAACCGAAGCTTTGACTATTTTTTGAGCTTTAGTCC
TTGACTTTACGTGTCTGTGCATTTTCTTCAGATAATTCTGTCATGAGACA
TGCTATATCCTCACTAAATAACACTGATACTTTCCGTACAAACGCCAGTG
CAAGTACGCCCTCCTTAGAGGAGGACCTATCAAATTGTAGATCGCAAAAT
CCCGACTTTGCACTACTAGATCTCTATGCTGGTTGTGGTGGAATGTCGAC
TGGATTGTGCCTTGGTGCTGAACTTTCTGGCATTAAACTTGTTACAGTAA
GACATGTGCTTGATGTGTTTAATTTCCTATAAACCATGCTGTTTAACTAT
TCTTACTCTTCTTCTTTCCAAGAAATGGGCAGTTGATTATCAGAAATCTG
CATGTGATAGCTTGATACTAAATCACCCTGAAACACAAGTGAGTTCACAA
ATTTTGCAGCGAAACCAGTGGCACCTTAGTGGAATTTGAGATGATACAAG
TGACTTGTATGTTCTTTAATTATAGGTAAGGAATATGCCTGCTGAGGATT
TTCTGGGACTATTGAAAGAATGGGAAAAGCTATGCAATTTGTATGCACTG
GCCTTTGATGACTCGGACACAATAGAATCCAAAATCAGTACAGATGGTCT
AGAAGATGTTGAGGTGCCTCGCGGAGAGTATGAGGTCTCATCTTTTGTTG
ATATTACGTATGGTACTATCAGTAAATCAGGAAAGCAAGGACTTAAGTTC
AAGGTACTGCCAAATAGCTGTTTCTATACCTGCATAGTGCATACAATACA
AAGACACCAAAAAGAGAACTAATTTTTTTTACGAGTATATAATAAATGGG
AAAATGTCAGACCATCTCCACCAGCACAGCTATTAATTTGTTATATTCCA
AGTTTATGAATTTGCTATAATCATACTGTATCCCAAGAATCCGATACATT
TAATTGGCATCACAGGTTTCTGGAAGTTTGCAATTAAGTTTCCACGAATC
CAGTCATTTGCACACCATAGCCTACTTGTCATTAGAAATGACCAACATCT
GAGATATTCATTTTTGGATTTGAATATGGATTTGTCTTTTGTACCGAAAG
AGATTTAGATTTGAATTTGGATTTAAGGCATATAGAAACGAAAATGAAAT
CGATCCAGAACCCGGAACCTCTCCCGTACTCAAACCGATCTGTCAACCGT
TTTAAAACCCAATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCATA
TGAATTTTGTATAATGTATTATAGTTTAGGGCCAGATTCAAATGAGAACA
TCTGTGTTGAGAACAATCAAATATTTGAATTGTTTTTGAATTCATGTAAT
TAGGTTGTTAGCTACCCCTACTAGTTTTGAAAAATTAGTAGATAATGTAC
TTGCAAAATTTTAGCTTTGTGGTTGCTTACGTTTAGGAGTTCATAGAGCC
TATATAATATGCATCTCTCTTGTTATTCAAAGTGAATAAGAATGAAGTAG
CTTGCAGTGCATATATCTTAGCTTTCTTATTCCTACAAACTGTTTCTTAT
TCTTACAAACTGTTCTGCACTTGAACAGAAAGTGCATAACAATACATAGC
TTCATAGAAAATGTTGCAGAAAATTTAGTTCTCCTGTTCTCATTCAAACC
GGACCCATTTATATATGTCTAAATCTCTCCTATGACATCCTCAAAAGTCA
GTTCTGATACCTTTTGCTATCACTATTCTCCAGTCTTTATTAGCTTCTGA
TGTATGAATATGCTGTTATTAGGAAATGCCTCAATTGGTGCTATATGTTG
TATCTGACTGCTAATTTGATCAAATATTATATCTTTGGCTATAGTTATTT
GTATAAAGTATGATATATGCTGTTAAAACCTTCTATTAAATGGTAATATG
CTGCCTATTGGTGACTTGAACTCGTTTACAAAGTCTTTTGTGGATATCTG
ATTTAAACCTGATCCAATAGTAGGTGGATTAGGTTTCGATCTGGATTTTT
TTACCTGAGAGAAATTGATTTTGGTTTTTGTGAAATCCAAACCATACTGA
CTTGTTGTCATCCCTCGTAATAATGATGAATTACAAGTGTACTAACGTCA
CAACATTATAATTACTTATTATTGGCTTCAAGTAGACTGGGATTCCTGCG
ATTTAAATGTGAAATTACTTTAAAGGCTTTCGAGGCTTTTGGATCATCCG
TGGAAATGGGTGGTATGGGAATGGGAATAATAAGTAATTCCAAGGTGTAG
TTAGAGAATGATTTACCCTTCTAACGGGAATCGGGTTCCCATTTCAAGCA
ACAAAATTCACTTTAACCAGGCTCATTAACCATGAACCAAACACCCCTTT
TCTTTAGGGAAAATGGATTTAGAGATGCAATTATGATGAAAGATTTTCGA
TTAAATTGCAATGCAACCACAATTAGCCTATAAATGCAAGGGCAATTGGG
CCTAAGCCTAGTAATGCAATATAAATGCAGCTCTTTATATTATATAAATG
TGTTGGAAATGTGTCTTTGTACGTCTCTTTGCAGAACATGGTTAAAAAGA
ACTATTAAAAACTCATTGCCTTGTGCATGTTTATATATCTGTAGTGTCTC
CGTGCGTCTGTGTATGCATATGTCCTGACCTGTGGCGCTGCACACACACA
TTACAATATCCTACAGCTCTGAAGATGTGGCTCAACCGGCAAGGATCACT
AGAAGTTTACATCGTTCTTACACCTCATAAAATAACAAATTTTCATCGCG
AGTTTTTTAAAAGATTATATTAATCCGAGTTGAGTATACTTTATACCAAA
AACCAAAATACACCTTTTAATTGCACATGTAAGTAATTGGAGGCTCCTTT
TAATAGGTGCGCTGGAAGGGCTATGATTCGGATGAAGATACTTGGGAGCC
TATTGAAGGATTGAGGTTTGTACTGTGTATTAAGAAAAAGTAGCAGCGCT
AGTATGTGTTTCATAACTTTACTTTTTGGTTCTTATTCGTATATCACCTG
CTCAGTAATTGTCAAGACCATTTGAAGGATTTCGTAAGAAGTGGATCAAA
ATCTAAAATTCTGCCTGTTCCAGTAAGTATATTTCATCCTTTTATTTCCT
AAATACAAATAATGCAATCTGGAGAAATTTTCTCTTTATTTATAATATAG
ATATTTATTGTATCTTGCTTGCAAACTTATTGTATCTACATATTCAGGGT
GACGTTGATGTAATCTGTGGCGGTCCTCCGTGCCAAGGAATTAGTGGTTA
TAACCGCTTCAGAAATGTTGATGCCCCACTAACTGATGAAAGAAATCATC
AAATCGTTGTCTTTATGGACATTGTAAAATTCTTGAAGCCTAAGTATGTA
TTGATGGAAAATGTAACTGACATCTTAAAATTTGATAAAGGTTCTCTAGG
AAGATATGCCCTAAGTCGCATGGTTGATATGAAATACCAAGCACGACTTG
GAATCATGCCGGCCGGTTGTTATGGTCTACCACAATTTCGGTTGCGTGTG
TTCTTATGGGGTGCTCTTCCTAGTGAAGTAAGTAGTTTCTTCACCTTGAG
CTTGAAACTGTACAGTTCACTTTCTTTTCTTTAGTCGTTACTTGCTTCCA
CAAATATCTCAGGAAATTTCAAGTGCTACTATTATACATTACCATAACTT
TATTCTAATTTTTTCATGAATATTTTTCAACTTGGGTGGAAATGACATCT
ACAATCGCGCGCACAAACACAAGATATATAGTATCACATTTTACCACAAA
CCATGTTAGCCTACAAACTCCACGTACTGTACTAATCACCAATCACAAAT
GTACAAATGACCTGATAACGTAATACAAATACCCCAACAGATATAGTAGA
AGTCCCCAGAATTAATCAGTATAAGATCACTAATTTACTTGGAAGTACTA
TAGTCGTTGGATTAAACATAATGAAGGGTTGCAATGAGTTTGTAATTGTT
GATCTGCATATTTTGTAGTACTGTTTGGTTTGCATTATATAACAAGCCTA
TGTATATTTTTATATGAAATAAACAATACTGGGATTACATATAAGCAGTA
CAGAACAGTTTATTTGCAAGCTCTGTTTATATATTAAGTTCATGCAAACC
CTTTCACGTGCAGAAACTTCCTCAATTTCCACTTCCCACACATGATGTTG
TGGTCAAATTTTGGCCCCCTCCTGAATTTGAGGTACTATCAGCTTACATC
AAATTTGTAATTCTAATTTCTGAATCAGTCATAGTAAATGAAATTCTTCA
TGCAGCAAAACACTGTTGCTTACAATGAAGGCCAACCCCGTGACCTTGAA
GAAGCTGCTATTCTTCGTGATGCCATCTCCGATCTTCCAGCTGTAATCTT
ATCATTTTAGTTGCTTATTTCTAAATGTGTTAAATGCTCTATCGAATGTG
TTGAATTATCTTATAATATCTCATACTCAGGTAACAAGTCAGGAAACACG
GGAGGAGATGTCATATGAAATGCATCCAGAAACAGAGTTTCAGAAGTATA
TAAGGTTATCTAAATATGGTAATGACATTTAAACACCATAATTTGAAGCT
GGTTCTTAGTTTTGTAGTTTCCATAGAATATTCAAATTATATAGTGCTGA
CTTTTAACTTTTCAATTAACATATCTAGCTTTCTTATTTTGCAAGATGCG
AGTAATTCTTTATGTTATTGCAGATAATACCATTTCTAGAGTGGAGTTAG
ATAAACTACAAATATAAAGTTGAGTGTAAAATTGAAGTAGATTTGGCCAG
AATATTTATTTGACAACGTCATCATTTTGCATAAATTTAAGAGATGCTCT
AATCTCTTAGTTTCTGTGATTCATTGATATATGTTTAGTCATGTTAATTT
TCATCACGCTTTTTCTTCAAGTTCATGTCAGAACCTCAATGGACAACATA
TGATATTTTCCCTGAAAGTAGGGTTACACATTAAATTAGTATCACTGTAA
TATGGCATTATCTAATCGTAATATGCTAAAGTACATTTTATCTATTATCT
TGTGCTTTTAGATACAGTGCGTTGTGGGTGTTATGTTTGGTGTGTTTATG
TTGCATACTAGTCTATATCCTTTTCTGAAATATACTTTTATCCTACCACA
TAGACTTTGTTTTTCTTTTGGCCATTGATACCTTTAATCTCAGTAGACTT
TATCATTTGCACAAGGTTTGTCCATGTCTCGCCCTACCAAACTCTCCTTT
TAAGTGAGAGATATTGGATATGTATTCTCTGTTGGTTTAATTCATGGTTA
AATATGATATTGCAAAGTGAACAACTCTATCATTATTGTATTTTGGACAC
CAAAAGGTATGTTTTAGATTGCAAATACTCTACTCTTTGACAATTATTCT
TTGAATGCCAAAACGTGTAGTCATATTTTTGCAATTGGCAAGATATAGTA
CACATTTGCAGTGTACTGGTTACTGTTCACAAAAAAAAGTGTCTGTGGCT
TTGTTTTATTTGGTTTTTACTCTGTCGGTAAGCTTTTTATGTTTTATAAT
ACAGCTGCATCGTTCTGTATGTTATAAGTTGTAACAAATATGTAAGTACA
TCTTTGCTGAAAAATGTACAAGTTGTCTGTCTTCTTTTTTGTGGGCCGGT
CATTTACATAAATTTTTTTAATATAGTTAACTTTCTATTTTGACAGAGAT
TACAGGCTATAGGTCCAATATTCCAGAATCAGAAACTCCAGTACTTTATG
ACCATCGGTCCTATCAACTGAGCGAAGATGATTACTTGCGAATTTGTTTA
ATTCCGCGAAGAAAGGTTCGTCAAATGTGATATTTAAGTTTTTTATATGC
GTCTAGCCATCTTGAGGTTCCTGAGATACATACTTTGTAGGGAGCGAATT
TTAGGGACTTACCTGGTGTCGTAGTTGATCAAGATAATAAGGTTTGCCGA
GATCCAACCAAAGAGCTGGAGATGCTACCATCTGGAAAGCCACTGGTAGC
AACTTGCCTTCTTAATCTCAAATTTCAGAAACTTATGATCATGCAAAACA
AATGTGAAATCTCTTGACCTGCTTTCTTATGCGTCCTAACATATAAATGC
ATAACGCTGCATAAGTGCAGAGATATTGCAGCATACACCCCATTTCTGGT
GAACTTTTTAACCGAAGCTTGAGCTGCAATTGAATCATTTGTTCATAATA
TTACTGGCTTGTTCTTCACATAATAAAACATGTAGTTGTGAACCTGACAC
AATGAGTTTTCTAGTTCTTTAGGCAAGGCACTCATGAAATCGAGATTTAA
AGAATAAAATTTAGCTAAAGAACAAAGGCAATATATGTTAAAATGGTTAG
AGAAATCAGAGTACTAGTGTTTCTCCACTTATATGACATCTTCTGAGTGT
TGGTTGTATTCACTTATATATTTCTTTGTAAATGGGTTTCAGACTTCATA
AGAATAAATTAAGGGCAATATAAGCAGAGTATACTTCAAGTGTATAATTT
GGCAGTTTTCTATTGAACAGAACAAAGTAGAGTAGTCACAATGCTCCACA
AGCATTAATATCTTTGTAATTTTAGTAGTGTGCAAATTACAATTTTTGAT
TATGGTTTATAGTAATAGAATAAAATTATTAGAATATTTTACTTTATATC
TGATTCCAGGATGCCATGGTAATTCTTGTTTATACTAGCATATTTTTAGT
TATGTGGACGTAAGTTTCTGAGTTCCAACCTCATATATACATACATGCAT
ACATACGTATATACATACATATAATTCCGTTTCTGATTCTTGGATAATTA
ATCTTAAGATTATATCTTTAACCATAATTGCGATGCCCTAAGCCTAAAAT
TTTGTTGGCTGATTGCATATCAGATTGTTCGGTAACTAACCCTGGCCGAC
CTAAATGTGTGAACTTTTTTATACAAATTTACAGCAGCTTTAGGCTTATA
AAAGTTTATTCAGTTGCCCTACTATATAGAAGTGGGATCTTGAGCAACTC
CAATACTTGACACAGAATAGCTATAGCCATTGCTATAATATATATGGCAT
CAAAAAGTAATTTTTTAGTGCCAAAATAAAACTTGCACTCCAATACTAGA
TGCATGAACTAGTTCCAAATTTAACTACTTTTTTAATTTTTAGTTAACTT
TTTAACTTTCACTCACATGCTAAATTCTAGATGCATTAATTGTTCCCTCC
AATTCTAGTTAAATGGTGAGGTGGCAAAGATGCATAAATGCATCCTTGGA
TTATGCATACTTACATTCAAATTTGCAACTCCTTTGGAGTTGATTATTTT
TGCATTTGGTGCCAAATTATGGCAATGGCACCACTTTTGGCATTGCATTG
GACTTGCTCTTATATCACTCCTTCTAATACTTGGAGTCCCTGTCATGTCC
AGCCAATCTACAAATCAACCATTGGCTAATGTAGGATTCTAGAGCTGGCA
AAATTTTGGTATATAATTTTGTTCCACACTTCTAATTCCAGTTATCCACT
TTTTTCTTTCTTTTTCCTCTTTTTTTGATATTTTTCTTCGCAGTACCAAA
CAATAATTAAACTGCAGCAATGCACCTTAATAGTAATTGAACATTATTCC
CTGTTTTGATCTATACAAAATGTTACTTTCTATCATTACTTTGCTTAGAA
TCGTATGTTTGAGCAAGGAACTGTAACATTTTGAGCTACGTATCAACTTG
AAAGCTTATTGATCATTTGTTTGTTCATAGGTACCAGATTATGTCTTCAC
TTTTGAAAAAGGAAAGTCAAAAAGGCACGTGATCTTTAATTCTCTACAAA
CCTTACTTCATGCACTTCTTTTAAAAAGATGTATATTGTCATTCTGTCTT
TTGTGCAAACATATAATAACAGTTTTTGATTAAATGACAGGCCTTTCGCA
AGGTTGTGGTGGGATGAGACTGTTGGAACTGTAGTGACATTTCCTTCATG
TCACAATATGGTATGTCTTACATCCTGCTGAGCGTTTGTCAACCAAGAAT
CTCATACAACATGAAATTCTGATATCTTTCTACAACAATAATTGGCAGGC
ATCATTACACCCAGAGCAGGATCGAGTCCTTACTCTACGTGAATTCGCCA
GGTTGCAAGGTTTTCCTGATTATTACAGATTCTGTGGTACTGTCAAAGAA
AGGTTTGAAACACTACTCACAGCATTAAAAGAAACTTTATGTTTAAAGTG
ACAGCCATATATGTAAATAATATAGCAAAGGTGCAAATGGGAACCAGTTA
GTAGTTGGGCAACCCGGGCAACTTAGTCTTGGATCCTCCATTTTCCCTGA
TCTGACCCGCCCCAGCCCAGCCCAGTTACTAAGGTTCAATCATTTAGGTT
ATTTGTTTGATGAAGGATCAATACATGTTAGTTATGATTCAGGAATAATT
CCTGTCAGCTTCTGAATAATTGTACACCCTAGTCCCTACGTCCCACCCAA
TTCTTTACATTAGGCTTGGGCACGGAGACTAAGAAAAATGAATAAAGTAG
TGCGAAATAGTAAGAGACGCATGTAAAGTGGCGGGATCCATTAATATTAC
ATTGATAGATCGGATAAGGGGATGAAGGTAATTGGTGAAATTAGTTTTTA
TATTAATAAAGAACATAATAAAGAATATATTCCATAACACACGTTGTTCG
ATAGTTAACTGGTTACCCAAGTTCCCCATTTATATGAGTTCCCCATAGAA
CCTTTATCTCCATATATACAGATTAATAATGTTATCACTTGTATTCACAA
GAAGAAAGAGACCTAATATACATGACAGAATAGTGCACACTTTGCTAGAG
TTACAACGCCTATCTGCATGTCGTGCAGGTACTGCCAGGTCGGGAATGCT
GTGGCTGTAACGGTATCCCGAGCCCTCGGATATGCTCTTGGCATGGCTTT
CCAAAAGTCTGGTGATGACGGGCCTCTCTTGAAATTACCACCCAAATTTC
CTTACCTTGTACCTGAAAGAACTGAAAAGTTGGAATCAGAACACTGATAA
TTATCAGTTGATGTAACAATGTCAAATAACTAACCTTGTAATTTAGAGCT
TCATTCTTTACAAGGTAAACATTGTTACCTACCTAGTACCTCAGATTGTA
ATTTGTAATTTTGTCTTAGGTGTAGCAAAACCTTTTGTTGTGTCCTAATA
AGTAGCTAGACTAATGTATCTGTAGCAATATACATTTTCTTTATTTTGTA
AAAAAATTTATTCTAATTTATTGAATTGATAGAAAAAGGAGTTCGTCTAT
CATATGCAAGACTCTTCCATAACAATTTTCCTTGAAGTAGTTAAACAGTT
TCCCATCATTTTGTTTCGGTATCTAGTTTTTGAGTTTACAAGTCAATTTG
GTTAGTTCTTTTATTGTTAGGTTACTAGTTTTGTTGTATTTATTTATTTT
GATGATAAATATTTTCAAAAATTATACACAGAATCACATGTTATAATTAT
TGAAACCAGAAAACAAGATGAAATTATAGTTCTAAAAATCATTGATTTGA
TCGATTAATTGCTACAAGATATTCTGTTGATTAGATTTTTCTAAAATTCG
ATTAATCATAATATATATTTTTAAATTAGTATAATAAATTTAATAAATTA
AATATTGTTATATTATTTTTAAATATTCGATTAATATCCTTACTAATCAA
TCTAATAAATACCTGGTTATGATGATGACTTCATCGATTAATTCGGATTT
GTACCATTTACTGCTGTCATGAAATTAGTAACAGTTTCCGAAATATGTTG
TTACATAATACGAGCAGCATAAAATGTGGAAAGTATGTCGAGGACGCAAG
GACATCGGGGCCGTTTGGGCAAACTTAAAAGAAGTGACTTCTTGCTTAAA
ATAGAGAAGTGGAGCAGAAGTGAGAAGTAAACAAATAACATTTTGAGCTA
CGTATCAACTTGAAAGCTTATTGATCATTTGTTTGTTCATAGGTACCAGA
TTATGTCTTCACTTTTGAAAAAGGAAAGTCAAAAAGGCACGTGATCTTTA
ATTCTCTACAAACCTTACTTCATGCACTTCTTTTAAAAAGATGTATATTG
TCATTCTGTCTTTTGTGCAAACATATAATAACAGTTTTTGATTAAATGAC
AGGCCTTTCGCAAGGTTGTGGTGGGATGAGACTGTTGGAACTGTAGTGAC
ATTTCCTTCATGTCACAATATGGTATGTCTTACATCCTGCTGAGCGTTTG
TCAACCAAGAATCTCATACAACATGAAATTCTGATATCTTTCTACAACAA
TAATTGGCAGGCATCATTACACCCAGAGCAGGATCGAGTCCTTACTCTAC
GTGAATTCGCCAGGTTGCAAGGTTTTCCTGATTATTACAGATTCTGTGGT
ACTGTCAAAGAAAGGTTTGAAACACTACTCACAGCATTAAAAGAAACTTT
ATGTTTAAAGTGACAGCCATATATGTAAATAATATAGCAAAGGTGCAAAT
GGGAACCAGTTAGTAGTTGGGCAACCCGGGCAACTTAGTCTTGGATCCTC
CATTTTCCCTGATCTGACCCGCCCCAGCCCAGCCCAGTTACTAAGGTTCA
ATCATTTAGGTTATTTGTTTGATGAAGGATCAATACATGTTAGTTATGAT
TCAGGAATAATTCCTGTCAGCTTCTGAATAATTGTACACCCTAGTCCCTA
CGTCCCACCCAATTCTTTACATTAGGCTTGGGCACGGAGACTAAGAAAAA
TGAATAAAGTAGTGCGAAATAGTAAGAGACGCATGTAAAGTGGCGGGATC
CATTAATATTACATTGATAGATCGGATAAGGGGATGAAGGTAATTGGTGA
AATTAGTTTTTATATTAATAAAGAACATAATAAAGAATATATTCCATAAC
ACACGTTGTTCGATAGTTAACTGGTTACCCAAGTTCCCCATTTATATGAG
TTCCCCATAGAACCTTTATCTCCATATATACAGATTAATAATGTTATCAC
TTGTATTCACAAGAAGAAAGAGACCTAATATACATGACAGAATAGTGCAC
ACTTTGCTAGAGTTACAACGCCTATCTGCATGTCGTGCAGGTACTGCCAG
GTCGGGAATGCTGTGGCTGTAACGGTATCCCGAGCCCTCGGATATGCTCT
TGGCATGGCTTTCCAAAAGTCTGGTGATGACGGGCCTCTCTTGAAATTAC
CACCCAAATTTCCTTACCTTGTACCTGAAAGAACTGAAAAGTTGGAATCA
GAACACTGA
Sequence Length:
15909
Sequence Checksum:
d868ad6f4dcfee51a7a037c35d39583e
View location in JBrowse:
Cds:
>DCAR_028247cds ATGGAAGCTGTGGACCTTTCTTTGCATGTGCTCGATAACAGCGTCGCAGA GGATCCTGTCCCAGTGGACTCTGTTTTGGGCTCCAATTGTGATGTAATTG AGGCTAGCAAGGATGGTGATGAGGGGAATGAGGGGCTGGTGGATCCTGGT TGTAGCCCGGCCGGAATTGCAATGCAGGTTCCGGGATCTCCGCGGCTGAG TCCGCTGCTTCATTCGTGTGATTCTGATTCTGATTTGTCGAGGAAGCGGA AGGCGGATGAGGGGGAAATGTGTGTGGGGATTGAATTTGAATTGGATCAG TTGGAGGGAATTGCGGTTGAGAGAGAAAGTGAGGGGATTGTTTCGGGTGG GGTTTCGGGTTGTGTTTCGAGTGGAAGGGTTTTGAGATCGAGGAAAGTGG AAATGTCTCCTGCATTGACTCAGTCTAGGGAGAGGAGAACACAGGGGAGG AAGGGAATTGAGGATGGATTGGTTTCGAGTAGTGGCAAGGTTTTGAGATC AGGGAAAGTGGCGGTGTCCACGGTGGGTTTGAAGAGAGATGATGAAGATG AGAGTGGTTTGATTGAATTTGGTGATGATCAAGAGGGGAGACAGACACCG GTGAAGGTGAATAATAGGCCCAAGGCAGGGAACGGTAAGGGGTCTGATTC GTCGAGTAGCAAGGCGCACAAGCAGAAGTCTGTTGCGTTTTTTGTTGGGG AGCCTGTTCCGGATGTGGAAGCAAGGGAGAAGTGGAATTGGCGATATCAA CTCAAGGTTATGAAGGATATGGCTTCTTTCCATGACAAAAAACGTTTATT TTATTCAACTTTAGAGAATGACAATCCATTAGACTGCTTAATTTCCAAAG TCAATGTTATAGAAATAACAAGAGAGCCAGGTTTTCAATTAAACGCTAAC CAGTCAACGTGCTTCTATTATGACATGGAGTACTGTATTGAATATTCAAC TTTCAGAAATTTATTGACCGATAATTCTGTCATGAGACATGCTATATCCT CACTAAATAACACTGATACTTTCCGTACAAACGCCAGTGCAAGTACGCCC TCCTTAGAGGAGGACCTATCAAATTGTAGATCGCAAAATCCCGACTTTGC ACTACTAGATCTCTATGCTGGTTGTGGTGGAATGTCGACTGGATTGTGCC TTGGTGCTGAACTTTCTGGCATTAAACTTGTTACAAAATGGGCAGTTGAT TATCAGAAATCTGCATGTGATAGCTTGATACTAAATCACCCTGAAACACA AGTAAGGAATATGCCTGCTGAGGATTTTCTGGGACTATTGAAAGAATGGG AAAAGCTATGCAATTTGTATGCACTGGCCTTTGATGACTCGGACACAATA GAATCCAAAATCAGTACAGATGGTCTAGAAGATGTTGAGGTGCCTCGCGG AGAGTATGAGGTCTCATCTTTTGTTGATATTACGTATGGTACTATCAGTA AATCAGGAAAGCAAGGACTTAAGTTCAAGGATTTCGTAAGAAGTGGATCA AAATCTAAAATTCTGCCTGTTCCAGGTGACGTTGATGTAATCTGTGGCGG TCCTCCGTGCCAAGGAATTAGTGGTTATAACCGCTTCAGAAATGTTGATG CCCCACTAACTGATGAAAGAAATCATCAAATCGTTGTCTTTATGGACATT GTAAAATTCTTGAAGCCTAAGTATGTATTGATGGAAAATGTAACTGACAT CTTAAAATTTGATAAAGGTTCTCTAGGAAGATATGCCCTAAGTCGCATGG TTGATATGAAATACCAAGCACGACTTGGAATCATGCCGGCCGGTTGTTAT GGTCTACCACAATTTCGGTTGCGTGTGTTCTTATGGGGTGCTCTTCCTAG TGAAAAACTTCCTCAATTTCCACTTCCCACACATGATGTTGTGGTCAAAT TTTGGCCCCCTCCTGAATTTGAGCAAAACACTGTTGCTTACAATGAAGGC CAACCCCGTGACCTTGAAGAAGCTGCTATTCTTCGTGATGCCATCTCCGA TCTTCCAGCTGTAACAAGTCAGGAAACACGGGAGGAGATGTCATATGAAA TGCATCCAGAAACAGAGTTTCAGAAGTATATAAGGTTATCTAAATATGAG ATTACAGGCTATAGGTCCAATATTCCAGAATCAGAAACTCCAGTACTTTA TGACCATCGGTCCTATCAACTGAGCGAAGATGATTACTTGCGAATTTGTT TAATTCCGCGAAGAAAGGGAGCGAATTTTAGGGACTTACCTGGTGTCGTA GTTGATCAAGATAATAAGGTTTGCCGAGATCCAACCAAAGAGCTGGAGAT GCTACCATCTGGAAAGCCACTGGTACCAGATTATGTCTTCACTTTTGAAA AAGGAAAGCCTTTCGCAAGGTTGTGGTGGGATGAGACTGTTGGAACTGTA GTGACATTTCCTTCATGTCACAATATGGCATCATTACACCCAGAGCAGGA TCGAGTCCTTACTCTACGTGAATTCGCCAGGTTGCAAGGTTTTCCTGATT ATTACAGATTCTGTGGTACTGTCAAAGAAAGGTACTGCCAGGTCGGGAAT GCTGTGGCTGTAACGGTATCCCGAGCCCTCGGATATGCTCTTGGCATGGC TTTCCAAAAGTCTGGTGATGACGGGCCTCTCTTGAAATTACCACCCAAAT TTCCTTACCTTGTACCTGAAAGAACTGAAAAGCCTTTCGCAAGGTTGTGG TGGGATGAGACTGTTGGAACTGTAGTGACATTTCCTTCATGTCACAATAT GGCATCATTACACCCAGAGCAGGATCGAGTCCTTACTCTACGTGAATTCG CCAGGTTGCAAGGTTTTCCTGATTATTACAGATTCTGTGGTACTGTCAAA GAAAGGTACTGCCAGGTCGGGAATGCTGTGGCTGTAACGGTATCCCGAGC CCTCGGATATGCTCTTGGCATGGCTTTCCAAAAGTCTGGTGATGACGGGC CTCTCTTGAAATTACCACCCAAATTTCCTTACCTTGTACCTGAAAGAACT GAAAAGTTGGAATCAGAACACTGA
Pep:
>DCAR_028247pep MEAVDLSLHVLDNSVAEDPVPVDSVLGSNCDVIEASKDGDEGNEGLVDPG CSPAGIAMQVPGSPRLSPLLHSCDSDSDLSRKRKADEGEMCVGIEFELDQ LEGIAVERESEGIVSGGVSGCVSSGRVLRSRKVEMSPALTQSRERRTQGR KGIEDGLVSSSGKVLRSGKVAVSTVGLKRDDEDESGLIEFGDDQEGRQTP VKVNNRPKAGNGKGSDSSSSKAHKQKSVAFFVGEPVPDVEAREKWNWRYQ LKVMKDMASFHDKKRLFYSTLENDNPLDCLISKVNVIEITREPGFQLNAN QSTCFYYDMEYCIEYSTFRNLLTDNSVMRHAISSLNNTDTFRTNASASTP SLEEDLSNCRSQNPDFALLDLYAGCGGMSTGLCLGAELSGIKLVTKWAVD YQKSACDSLILNHPETQVRNMPAEDFLGLLKEWEKLCNLYALAFDDSDTI ESKISTDGLEDVEVPRGEYEVSSFVDITYGTISKSGKQGLKFKDFVRSGS KSKILPVPGDVDVICGGPPCQGISGYNRFRNVDAPLTDERNHQIVVFMDI VKFLKPKYVLMENVTDILKFDKGSLGRYALSRMVDMKYQARLGIMPAGCY GLPQFRLRVFLWGALPSEKLPQFPLPTHDVVVKFWPPPEFEQNTVAYNEG QPRDLEEAAILRDAISDLPAVTSQETREEMSYEMHPETEFQKYIRLSKYE ITGYRSNIPESETPVLYDHRSYQLSEDDYLRICLIPRRKGANFRDLPGVV VDQDNKVCRDPTKELEMLPSGKPLVPDYVFTFEKGKPFARLWWDETVGTV VTFPSCHNMASLHPEQDRVLTLREFARLQGFPDYYRFCGTVKERYCQVGN AVAVTVSRALGYALGMAFQKSGDDGPLLKLPPKFPYLVPERTEKPFARLW WDETVGTVVTFPSCHNMASLHPEQDRVLTLREFARLQGFPDYYRFCGTVK ERYCQVGNAVAVTVSRALGYALGMAFQKSGDDGPLLKLPPKFPYLVPERT EKLESEH*