Resource Type:
Gene
Organism:
Name:
DCAR_026720
Identifier:
DCAR_026720.gene
Locus Tag:
DCAR_026720
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_026720, is a part of gene, DCAR_026720. |
| The genetic_marker, MK002114 ESSR-009, is located in gene, DCAR_026720. |
| The genetic_marker, MK002738 K0182, is located in gene, DCAR_026720. |
| The genetic_marker, MK008527 8_29366422, is located in gene, DCAR_026720. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_026720 | DCAR_026720.mRNA | mRNA | DCARv2_Chr8:29359334..29373095 |
Sequence:
ATGGCGGAGAAGCAGCTGATCGTCGTTGTTGAAGGCACTGCTGCTATGGG
GCCCCACTGGCAAACGATCTTAACTGAATATCTCGATAAAGTCATCAAGT
AAATGATTTCATTCTTCTAATTTTAAATTATTTACTATAAATTTTATGTA
TGTTTTTTTTTTGTTTTAGTTGTGTAATTTAGGGCGAAATGATGTGAATT
TGAGGTTTTCTGTCGTAGTTAGTGTGTGTAGTCTGTGTGGAATGTTGATT
TTTGGTGTTTTTTGTGCGGAATTGTGTTTTTGGGCTCTGATTTCGTTGTT
TTCGAAATGTTTTTTAGGTCGTTTTGCGGATATGATTCGACAACGCAGGT
AAGTGTTGCTTTTATATCTAGAAGTTGTGGTTATTGTGTACGGTAGAATC
TCGAGAAGTGAATAGCGTTTTTGAATGAATGAAGTTAATCGGTGTCGAGG
AAATTGAGTAATTGTATTTCTGTTTGTTGTTAATTTCGTATAGATGAATT
TAGGGTTTAAGAATTGGAATGTTTGAGGAAGTTTTGTTGATATAGAAAGT
GTCTATCGACTAGTTGTTTAAAATGTCACATAACTTTTCTGTTGGACGAG
CGATTGCTGCCTCCTGCCTTTCCCGCCTTTCCTTTAGTTAGTTGGGTTTG
AGGCAATTGATTAGTTGCGCCTTTGTTGAAAAGGCAACTTATTTTGTCTA
ATGATTGCAAAAATATGGTAATAATGATGAATATTATCTATTATATAAAT
TGCCATAATATTCTGTTTTTAACTAAATATAAACGTTTAAGATTGGATAA
CAATATAATAAAAATGGCGTGGGACATTTACTGCATTTTTTGACAATTGT
TTACAATGTTCTCAGTAGAATCTTCGTGCTTAGGTGCAAGGTATCCCAGG
TATGTGAAGTCAAAAATGTGTGATTTAGTGCAATTTCATTACTGGCAAAT
GTGTGTTGCTGAAACACGCTCAAGCACATGTGCCTAGACAACTATTATGA
CCCTATATTAAACAAATAAATAAAACCACTGTGTCTTTGGTCTTTCAAAG
ACATGTGTATATGTATTTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTCATGGTTGTTACGTTGGTAAGTCGAGTCGAGTCGTGACTAGTCGAG
ACTAGTCAACACAAGTCAACAAGGTATAAAATTAATAATATATATTATAT
ATTGTATTGGAAGCTGCAATTGATGCATTGTGTGATGGAATATCACAAAT
CTCATCATCGTTAGTATTAACATCATCATCTATTATCATGGTTTTCTTGG
CATGTTTGTCAATATACTCTTTCATCTCCTTTTGAATCGCCGTTGTAGTT
TTGGGGCACATTGATACATCCACATATCCACCCGCAAGATGTTGCTTCAA
TCTTCTAACCCCCGAACACATATTTTTTTTTTACAAAGAATGCATTGTAC
CACATTCTTATTATTTAAATCCGGCCAAAATCCATATTTCCAGCCCAGAT
CAGTAGATTTGGCCTTCCTTTTGGGGTCATTAGACGGGTCATAAACAGCC
TCGTTCGATGCATCAGCCATTAAACAAGTACTATAATTGTGTGCGTGTAC
TGGCATTAATCAATGGCTACTACAACTAGTGACTACTGACTATTGAGTAG
TTTGTGTGTGTGTGTGTGTGTATACAAGTATGTGTGTGTATAACTGTGTT
TGTATAAGTGTGTATAACTGTGTTTGTGTGTATACATAAGTGTGTGTGTT
TGTGTGTGTGTGTATACAAGTGTGTGTGTGTGTATAAGAGGAGAGGATGA
AAAGTTTACCTGGAGAGAAGAAGAGATCAAAGGGAATCGGAGTTGGAATC
GATTCAATCGAAGTAACAGCGACTGAAACGGCTTGGAATCGACTTGAGGC
TGCCGGGCTTTCGGTTTTAGGTTTTAATACAACTGGGTGTTATGATTTAT
GCAATTGGGTCACTGGGCTTTTGTTTGTTTTTTGAAATTAAACTCTAGTC
GACCGACTGGGTGTTATAGTTGACCCGACTAGTCGACCCAGTCGATCATA
AGTCGGGCGAAATACTTACATTTTTCTAGTCGACCAGCCCAGTCGAGCCC
TGCACACCGACTGCTCGACTAGTCGAGCGACTCAACAACAATGATGTATG
TATGTGTGTTTGTGTATGTATATATAAATGACTTTTTCTTTATGTATTGT
TTTTGATTTTATGTGGTAAAAGTAGAACCGTAAATAATATCAATAAGACT
GGCCAAAACATACAAAGTCCATAAGACTATATCAATCAATTTGGTAGAAT
TCCTGGTACACATGCTTTTATTATATTAGATGTGTTATAATATATATATA
TTTATGTGTGCTGAATGCAAATTTTTAGTAAGATGACTTGGGACCACGTT
AACTCTTGCCTCTCAGTTAATAAATGTAAGACCCTTGTCGCCTCATCCTC
CTCTCCCCTAAAATAACGTTAGTGTTTGATATGTTACTGCATTATTGACC
AGCTTTATGATCTACTATCATGTAGCATGATAATCATCAGATTTATTACT
TTGCCTTGTAGAAGCCATCTGTTCCTGTTGAGTTCTCGCTTGTCGTGTTT
AATGCTCCTGGAAATTATAGTGGTACGTACTTCTTCAGTCTTATTTAATG
CCTGATGGTGTTTTTATTGAAATTGTAGTATTTTGTTATTACAATACTGT
TTCCACTTGGTAATACTTTTAACTATATGTAATTGGTCATCTGAATTTCT
TACATATCATGTTCCCACAGTGCCACACTGTTCTCGAAGTAGATTAATGG
AACACAGGCTGTCTGTCTGAACTCTGAACCCGATCTTTACAATTTAGATT
GATGATATTTTGCTCACATTTAATTAAGATTTGGAAAATATCCGTGGTCC
TCAACAATGAATCACAAATCAATAAACCTCGCAATATAGTATGTATGTAA
TCAGCATTAGTCACTATAATAAACTGATATGCATACAGGTATATGTATAA
TTATTAATAAGTATTACAAGTATACATAATGAATGTATTGCAATAGATCA
GATGAGTACAGGAAAGAGATCAGTATACAAGTGATATAAACCATACTGAT
ATAAACAAGAGGATATATTTGTATTGTACATGTAATTCAGTATACAAACA
AATCGGTCGTATAATTTAGTATACAAACAAATCGGTATATATATGCAAGA
ATCTGGTACATGTATGTGTATCATCGATATATATATGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAGAATCAGTAT
ACACAAGAATAAAGAAAGTATATGATTAGACCAGTTTTTTTAGGACCCAG
TCAGCACCCCCAACCACTATTTGATCAAAAAGCATGCTGCTTCTGCTTTT
TGCATCTCTAAAGCAATGAGCTTTGGGTGCGCATCACTTCTTGCATAAGC
ATGCTTCTAATAAAACTGTTTAAGACAATTAACTATGTACCTAAACTACC
ATAATAGTAAGTAGGGGCACATTCTACTACCAACCTGTAGACATTCATCA
ATATTAACACGGGATGTACGAAAAAGAACTGTAAAGTTTACTGAAAAATC
TGAAAATAAATTGTATAATATTTTTTTTTTGCTTAATAGAGTATAATAAA
TATTTCGTTTACAATACAAGCAATAAAATTGTATATACGATTTCATGCAG
TAAATTAACCATAAACATTGGTTGTTAATTTATGTAAAAATGCTTGGTGT
ACTATTTGTTGCATATCATGTCATTTTAAGGGCATTTTACGCTAACAAGT
TTTGTGGTTGAACACAATCCCATGGTAAGATATCATGAAGTTATTAGACC
ATTATCCAACATATTACTCTATGGAGTTATGACTAAAATGTAGCAAGTAT
ATATTGTATCACATATCCTATACTAGTTTCTGTATCAAGTTTCTTATGAC
AATCTCATTGGCATGCCTCCTTAGTATGGATTTCCATATTTGTGTGTGAT
ATTGAACAATCTCTGATGAATACATAAATATTTTTATTCTTGGCAAGTGA
GACTATTCTGGTGTAGGCCATTAATAGTTTGGAAGTTAAAGCTAGCTAAT
AAATTTTTAATGTTTCAAATATAGCATATTCATACATATGAACATCATCT
GCTTGACTTTGATTTTTTAATTCAAATGTCGATATATCAAGCTGACCCTG
TCAAGTTTTGTAAGTTATGAAAGTAGCAGAGCTAACACTTTCTGCTGATC
CTAGTATTTTGTAGATCTTCAGTTTGTTGACCTTGTTAACGATAATGGCT
AATCATTTCCAAACATCAGTATTGGAGTTACGTTGATATCTTCATGCTTT
ATCAACACCTATCTCATCTGATTCTTAATAATTGCAAATATATGTTGCTA
GTGGTAATTGCCAATTGGTTTATGAAAAGATTTCATTGCTTAAATTAATA
TTGTCGTGGTGCCAAGTTGGAAACTTAAATTTGAGGAAATCTACAGATTA
CATAAGGGCCCTGACTAGAAAGCTTTTTGATGGTTGATTTTTAATCGACT
CTTTTCAGGCTGAAATTATTTTATTGTGGGTATTGTTTTTAGCAAATCAT
AATTATAGAGCATCTCTTCATAAGCCTTGAAAGGGATAATTAGAGTCTTT
TAGTACTCTCTCTCCCCCCCGCCCTTCCCCCTCCCCCTCCCCCTCCCGAG
CCCTCTCCCTCTCGCGTGTTAAATTTTTGTTTCAGCATTATAATCTTCTT
GCTATTCTATTCTATGTGCAGCTTGCCTAGTTCAAAGGAGTGGGTGGACA
AGAGATGTTGATAATTTTTTCCAGTGGTTATCAGCTATATCATTTTCTGG
TGGTGGCTTCAGTGATGTTGCAATCTCGGAAGGGCTTGCGGAAGCTTTGA
TGGTGTGTGAGCGTTTATTATAGTTTTTTTATTCCTTAAATGGCTTGACA
TCTTATTTCCTATTTCACAGAGATTATTTATTACAATTACTTAGTGTCTT
ACATCTTTCCAAATTCTCTTGTCTTTTTTTTATATTGATTTTCCAGCACA
TTTCTTATCTCGATGTAAAATATTTTACTTTAGATGAATCCAATATTATG
GTGTGTCCACTGTGTGATGTATCTGAATCTAAAGTTTATTGTTCTAATCA
GCACCTGTGAGAAGAGTAGAGATAAAGTTCACATTTTCTAACATGATCTC
CGTAAATGAGAAGACTTTGATGAATACGAAACTCCTATATGTCCAATATT
ATAATAAGTGACCAAGCTTGATAGAATATCAAACCTAGTGTTTGTGTGCT
AGACTTATTCCTGCTGCCTTTTCAATTATAACGATGAACTTTAATGTCTT
TCTTTCTATCATGATTCATTAATCAGATGTGCACGCCTTTGAATGGGAAA
CAACCTCATCAAAATGTAGATAAGCAAAGGCATTGCATTCTCGTTGCTGC
AAGTAATCCTTTTCCCTTGCCTACACCAGTTTTTCGACCACAAATTCCTA
AGTTGGAGCAAAGTGAAAACACTGAGTCACAGAAAGAGAGCCGTATATCT
GATGCTGAGACACTTGCGAAATTCTTTCCCCAGGTGCTATTCATGTTTTA
TACTTTCCAAGTGTATCATAAGGCAATTCTATATAATGTTTTATAATTAG
CTGATCATTTCATTTTACTGCAGTTATCTGTTTCTCTTTCAGTTATATCT
CCTAAACAGTTACCAAAACTCAAAGCAATCTACAATGCGGTAATGCTACA
TTCTTCTGAACTTGTTGGTTTATTTTACTTCACTGTTGTCCTTGTCCAGA
GTTTGCCATTCATTCATGCATTACTCTATGTTCCTTTCCCTAGCTTCCGA
TATAAGCTCTTTGAATGAATCTCTTATGTAACAATTTCTTCTTTGTTGGC
AACTGATCACATTTTCAACAATCAATTTGAGAGAACTAGTGGCTTTTCTG
TAGATAGGCTACCTGAAGTTACCACTGTAGTTGTATTGAATTGATTTTAA
ATGGTATTGCTGGTGTGGCATGATAGGCATTAGCTAAGAAGCTACAGGTT
AGAAGGTAATACAAGATAAGAAGAGGAAAAAAGAAGCAATTCATGCACAA
TTTACTGTTGAATTTTGTCTTCTAAATTGTCTGGGGAATTCCTATAAACC
TTCATTTCTAGTTACTTCTTATAGAACATGAAATCGTTTGCATTGAGGAT
CAATTGCNTATAGAACATGAAATCGTTTGCATTGAGGATCAATTGCTTTT
TTTTTTTTTGAAATTTCAGATGGCTCACTTTTAATAAGATGATCTCTAGT
CCCCACATATTTTATGATAAAAGTATGTTTCTATGCGTATCATTTCATGG
GAAAACCTAAGTGAATGCCTTCAATGTCTCATTACCGTCTATAGTTTGTT
ACCTTCTGTTATCAGTGATTATTATTGCTTTGGTTGCCATATAATATTGG
TACAAATATTTTTATATTTAAGCTTCAGGTTTCTCTATTATTGAACATAC
TTTTGTGCACCTCTTCATATAGATCTTTGTCAATTTTACAGTTTTCTTTA
ATACCCGCCAGTTAGTCACCGGCAATAATAGTTAATTTGATTTGCCATTT
ACTATTATTTACAGGGAAAGCGCAATCCTCGAGCAGCAGACCCTCCTATT
GACAATGTCAAAAGCCCTTATCATCTTGTTTTAATATCTGAAAACTTCAT
TGAGGCTCGCGCTGCATTAAGTCGGAATGGAATTGCTCCCTTAGTATCAA
ATCACAGTCCTATGAAAGTTGATACAACTTCAGTTATGAAAGTAGATACC
TCTCCTGTTCTTCCGGTTTCAGTTTCGCCTCCAACTTCTGTTCCTTCAGG
TCTGACACCTAACATCTGAAGCAACTTTCCTACTAGTCCATCACCATGCT
GAATTGTCAGTTGCTATACCATAAGCTGTTAGAAGAAGTGCAAAATTATG
TAGATGTTTCCGAACAGTCTGCTAGGGTTGGTTAATATTAGAAGTTCAAT
ATTGAAACAAAGCTTTTATGATATTGGAAATGATTCTTTAGTTACTAAAA
CTGTTGAGTAGGTGTCTGCAAGATGTGAAATACCATTGAAATGGACTGCC
AACTAATATTATTTTGTTGTTGTTTCTACTTCGTAATCTTCTTTGAAGAT
TCTAATATTCTGTCTTCAATATTCAGCTAACGGATCTGTCATGAATCGGC
AACCAATTATCGTTGGAAATGTGACCCCGACTATTGTGAAGATTGTAAGG
CTCATTATTATCCTCTTGTCTCTCCCTTTCATCAAATTATTATTGACGCT
AAAAGTTTGGATGTTTGATTTGGTCATATTTTTTTTTTTTTTTAACTCAA
GTAGAACAATAGTGGAGACAATTAACCTGTATACCTTTGCAGGAGCCAAC
CACTGTGACGTCGATGGTTTCTGGACCTGCATATCCACATGTTTCATCAG
TCCCACGTGCTGCTTCACAAGGAGTTCCAACCTTGCAAACTTCTTCACCA
CTATCTGCTCCCCAGGAGATGATCCCAACTACTGAGACTGTGCCAGATTT
AAAACCTCCAGTTACTGGTCTGTCACAACCTTTACGTCCACTGGGTCCAG
CAGCAGCAAATGTAAGCATTCTAAACAACCTCTCTCAAGCACGACAAGTG
ATGAATTCTGCAGCCCTTGCTGGTGGTACTTCAATAGGCCTTCAGTCGAT
GGGTGGAACACATATGGCAATGCATATGTCAAATATGATATCTAGTGGAA
TGGTATCCTCTGTACCTCCTACACAGACTGTTTTGTCTTCGGGCCAATCA
GGCATGACGTCAATTGCTGCATCGGGACAACCAGGTATGACATCAATGGC
TGGGACCGGAGCATTAGCAGGAAATGCGCAGGTTGCACTTAATACCAATT
CGGGTTCATTTGCTTCTGCATCTTCCAATCTGTCTGGAAATTCAAATCTG
GGCATGTCACAGCCAATGGGTAATACTCAAGGAGGTGTTAATATGGGTCA
ATCAGTACCTGTAGTGAGTCAAGCAAATATTTCATCAACACAGATGGCTC
AAAATGGAATCGGAATGAATACAAATATGATTAGTGGTGTTAGTCAATCT
GGTATATCTTCTGCTAATGGCACAATGATGCCGACTCCTGGAATGGGTCC
ACAAGGACAACCTGGACCTCAGTCTCTTGGGATGGCTAATAATGCAGCAG
CAAATATGCCCATTCCTTCGCAAGCATCGAATGCCATGCAATCAGCACCA
TCACAATCTAAATATGTGCGAGTATGGGAGGTAAAATTTCTTTTTAGCAT
TCAACTTAATTTTAGTGTTCAAGACTTGCCATGGGTATAGACACTTTTTT
CTGAAATTGACTTAGATAATGGTAATGTAGTGCACTATATATGTAATAAG
GTACTGTTATTTGAATCAGGTCCATGCTATTAGTAATTTGTCCACCCGTC
TTGCTAATATGTGCTTGGGGTCCCTTGGTCTAATAGGTTAGAGTTGGACA
CAACATATGCAGTTGTTGCATACAAAGTACATAATATCTGCACTGGTTAA
AGTTTTATTTATTACACTTAAACTTCATCATTGCAAAGAAGATACTGATT
ATACTAGTGCATTCTCTTGTTGATATGTTTAAGAAGGGATATTTAACGAG
ATTTTACGAGAAGGGATATTTAAAGACCTTACGTCTCGTGTTCAAAAGAT
CTCGTTTCTGCTTGGTGCAATTAATCCCTTCTTAAACAGGGAGAGGAAAG
ATAGTAGTTTTCATCTTGCTACATTTTAGACAGATGTGAACCTAGATCTT
AGAAGTTGCTATTTATTTTTTTGCCTGCTTTTAAGTTTTATATGCAGGGT
CATGTTCCACATAGAAACATTAGGCATAGAACCCTTAGAACCCTTACCTT
ATTTCTAGTATTAGTTAGGGTTCTGCAGCAGAACTGCACATGAAAAAATG
TCCTATTTATGTATTATATTTTGAAATTACTTTTGAACACAGATAACGAT
GCAAAAAAAAAAAACATGTATTTAGATATAGATCCTGAAAATCAATGTAA
AATATAGGGTTCTGCAAAAGAACCTTAGTGGTTCTATGGTTCTATTTTAA
GCACCGGTTCTCTCTTAGCGCGACCCTTTATATGCAATATTAATGTATTA
AATGATTTGTGAGTATGTTATGAAACTTCTCATGGATAGCTCCTGAATCG
CAGTTCATAGTCTTCACAGTGCACTGTGGAATACTGGAATCTCAGTTTAG
AATCTTCCCAGTACCAGAAGAAATTCCGGAGTTGAGAAAGAATTAAATAC
CTTGAATTAAATTATAAAAACCTGAAAGTTCTAAAGTCTTTTTAGTCTGA
CTTGTATATGGTTTGGCCCGAGTCTTCCAAAATGAGATGAAAGGATCTTT
ATTTTTTTTCTTTTCTTTCCTCACATCCTCCCTTGTTGTCATTTATAATT
AAAAATTCTGTAGTAACTAATTGTATTAAGAACAGAATCTATACCTGGCT
CTTAGCCAAAAAAAATTTCAAAAATTTATACCTGGCTTATGTTTATGATT
AAAATAATTTCTACTTGAACTTTAAAATTTATGTTTATAATTGTACACAA
AATTATAATTTGGACGACTGTATCTTATATAATAATAAGTTTTCTGTATG
ATTGTATAACAATTGTAAGATAATTTGACCGTTGGAATTGATGTATTTTA
TATTTTACGATATAAGGTCTTAACTGTGGACTTTATAAAGAATTAAGCTA
TATGTAACTGTAAAGTGTAAGTTAAAGATAACATCTATGTATATTTGATA
ATATGCATGTGGTAATTACCAAATCGCTCTTTGGACACCCTAGCTACATG
GCATCCTCGCCACCTTTCCAGCGTTTAGGCATCAGTAAAAACAATTTAGG
GATATAACTATTTAGAAGGATAGTTATGCAAAATACATGTGAGATGTATA
AAAAAACATGGTGATTGTATATTTAGGAAGTTTTCACTATTTCATGATTC
ATCATAGCATATCAATAAGATCGAGTTGACCCATATGACTCCTCTTTATT
GGACTTATTATGTTTTGTGTAGGGATATTACCATTTATTCAGTAATGACA
GTAATGTGCGTACTGTGTAGTCATGTTGAACTTTTGAATTGTCCAGGGGA
TTATAAATTGTGTATGCTTATATTTTCTTCTGCTAATGTGTAAATTTGTT
AAGTGGTTAAAAATTACCGAATGATCTAAATTTTGCAGGGAAACTTATCT
GGGCAGCGACAAGGCCAACCTGTATTTATTACCAGATTAGAAGTAAGTTT
ACACAGAATTCATCTGTTAACATTTTTATTTGAAATGCCATTAAAATTGT
GATATATGACCAAAATGCTAGTTTCGTTTGCATTCCCACTTGTGTAACAT
AGACATGACTAAGCATGTGGAGTTTATAATACATCTATGTATACAATGGT
ATTATAAGTCCTTCATTTGGGTTCATTTTTCCATTTTACATGTTGCAGGG
GTACAGAAGTGCATCAGCTTCAGAAACGTAAGTACAGAGCTTATTACTTT
TATAAGAATTGTGTTTCAGGAATTTATGTATTATTGTTTGAATCTTCCAA
GGTGCACAATGTTAATGTCAGTTGTATTCTTTAGGTCTGAAAAATTTTCT
TCCAGAATTTTAGGGAACAAAGATAAATTTGTTTTAAGTGGTAATTGTAC
TGAGTCATTAATACTAGAACTGGATTTGCGAGTAGCTGCAGTTTTATGAT
CAATGGTGGATTTGTGAGTAGCTTCTGTTTTATGATCAATGGTGGATTTG
CTCTAGGTTTATTGTTTCCATAGGTAAATTTGGTGCAAGTTTGCCGTGCA
TATATCCCTCGAGAAGGGTAGATATGGCAAATGACTATAAGCTTCCATAA
GTCCTAATTATACTTCGATGTGTAGTGGATTTTTATCACCACGTACTCCT
TACATATTTTGTATTGTCAAGCTCTATTATTAAACTTAATAAGTATTTGT
ATATTGATAATGGACAATTTCTCACTTAATAGAATAAGGAAACCCACTTG
ATGAATATTTTATTTATTCTTGGGGGTTATTAACTTGTTGAGTAACTTTA
TTTTAATGACTATATGAGTATTGATGTGATTCGGACTTTGGAGTAAATTT
TGTGTAGATTATCGTGTTTAAATTTGTAAATTTGGATCATCTTTAAAATT
TTCTAAGATTGATTCCATATAACATCATAGAGCACGTAAGCAAAAGAATT
GTGCATTTTCTTAGTGAAGAGCACTTTACTGTTACTGAAGTTTAATAAAT
TTGGGCAAATTAGTCAAAACTAGCATTTTGACACAAAAAAACAATGAGAT
GGAATATGATTTAAAGATGAATGATAGCCTATTTTTATAGTTGAAGGCTT
GAAGCATGTCTTGCTAGTCCACTGATGATATTAAGTTTTCTTTTCTTGCT
CCAGGTTGGCAGCTAATTGGCCACCAACTATGCAAATTGTAAGGCTAATA
TCACAGGACCACATGAATAACAAGTAATTTCCTCAGTTCTCATTGTAGTT
CCATGCTTGCTATTTTGTTCACTGTAAATGCGCTTCTGGTTATTATGGTC
ATTATGTGAATCTTCTTTCTTTTCAATACCAGGCAATATGTTGGGAAAGC
GGACTTTCTTGTTTTTCGGGCAATGAACCAGCATGGTTTTCTTGGGCAGC
TGCAAGAAAAAAAGCTTGTAAGTCATGTGAAAAGCTTTCACTGTATGTTA
TATAATAAGAGCTTATTTACAATATAAATACCGTACTACAGTAGTTAAAA
CGAAAAGGATTTATGTTGATTGTGGAAGTACTATACAAAAACAATGAGAT
CACTATTTTTACTTCAACATTTGAGTACCATAAAGAATATCTTTAAAGAG
AATGTCAGACCTAATATCATAAAGATGTAGAAGGTCCCTCTCTACTAAAC
ATATTTGTGCATATTTTGAATCATCGCACTGGGGTAGAGATGTGGATGCT
GCAGGGGACATATCTTGAGAAACATCGTGGCAAGATGTGTTGTCTATGCT
TTACTCTTCTCATTGAGTTAGATGAGTTTGACAGTAAGTGGTTTCGAGTC
ACTTGTCACTAGCTTCTGTTTCGAGTTTGGCTGCAGAGTGCAGAAAAGTG
TGACCCCAATCCTTGTAAGTTTTTGTAAAATTAGAAATTCAGGCTACTGA
TCCAACATTTTCAAGCCACTTACCTAAATATACATTTTTATCGTATCCCG
AAATCCCATGCAGGAGCACAGTTGCTGATTTGATTCTGTAGCCCAAATGC
AAGTTTATGGACTCATGATGTGCTTATAATTCCATCACATGACCTTTTAA
TTATAATTTTATGATGTGCTGATTCGAATTCTATACCCAGACGAAAGAAT
GTTCCCATGAATCCATCACAGTACCCTTTACAGACTCTAGGAATAAGGTT
GAAAAATTATAATCTGTGGATGAAGAAGTTCTAGAAATAAACTCAGAGAG
CAGATTTAATGCTTTCCTATCAGAAGGTCGAAAACACTTGAAGCCCATAT
AATCATCAGAGTTGATAGAATGGGGCAGGCACCTTGTAGTTGTTGGATAA
TGTTTGGAATAGTGTTTTATATCTGAACTGTGAAATTGCGGGATTGATTT
AACACTACGAACATCCTGTGGCTGGTATCTGGTGAATCAGAAGCTACTGA
AGTTGTGTGACATACTCTGCTTAATCCGAGTATTTGTTAATCTGCTTTAA
GTGAAGAAAATTTTCATTAGGAACTAATAATGTTATCCCCTATCCAGATA
AGAGTGAAACCTATCTGATTACTGTTCAAACCTTAAATAGAAAGTTCCTG
TTTGTTACATTGTGTGTGACCCATTACTTAATTGTTTTTTCTTCTGTATT
GCATAATGCCACATCTATAATAATTATTGAGTAAAGTAGATATTGTGTAT
TTGTCTTGCATAATTTTTGGTTTCTAAATTATATGAAATCTTCTTTGTTA
TCCTCACACAAGCTCTATGCTGACATTTGCTGTAAACATCTAGTGTGCAG
TTATACAGTTGCCATCACAGACATTGCTGCTATCAGTTTCCGATAAAGCC
TGTCGTTTAATTGGAATGCTATTTCCTGGGGTAAGTGGAAGCTAACTGAT
TTTGAAAGTGACATTGGTAGATTTGCTTTTATTTGAGTCTGCTACTCTAC
TCGGTTTCACCACCACAATTTCAGGACATGGTCGTGTTCAAACCACAGAT
ATCCAATCAACAGCAACAACACCAGCAGCTTCAACCACAGCAGCAGCATC
AGCAGCAGCTACAACACCAGCAGCAGCTTCAACAGCTTCAGCAACAGCCT
CTGCCGCAGTTGCAACAGCAGCAACAGGTTCCACAGCTGCAGCAGCAAAT
TCCTCAGCTGCAGCAACAGCAGCAGATTCCGCAATTGCAGCAACAGCAGC
AGATTCCGCAATTGCAGCAACAGCAGCAGATTCCCCAGTTGCAGCAGCAG
CAGCAGCAACTTCCGCAATTGCAGCAACAGCAGCAAATTCCCCAGATGCA
ACCTCAGCAGCAAATGCAGCAGCAACAGCAAGTTCCCCAGATGCAACAAC
ATATCCCACAAATGCAACAACCATCACAGCAGCAACAAATGGCTGGGACG
GGTATGGGTCAATCTTATGTTCAAGGTCAGGGTCGACAGATGGCAAGTCA
AGGGCAAGTTACATCCCAAGGTCCACCGAGCATGCCTGGAGGAGGGAGCT
ATCTAAGTTGA
Sequence Length:
13761
Sequence Checksum:
d60dcfc04eee7aa8101f49a7681c4c9c
View location in JBrowse:
Cds:
>DCAR_026720cds ATGGCGGAGAAGCAGCTGATCGTCGTTGTTGAAGGCACTGCTGCTATGGG GCCCCACTGGCAAACGATCTTAACTGAATATCTCGATAAAGTCATCAAGT CGTTTTGCGGATATGATTCGACAACGCAGAAGCCATCTGTTCCTGTTGAG TTCTCGCTTGTCGTGTTTAATGCTCCTGGAAATTATAGTGCTTGCCTAGT TCAAAGGAGTGGGTGGACAAGAGATGTTGATAATTTTTTCCAGTGGTTAT CAGCTATATCATTTTCTGGTGGTGGCTTCAGTGATGTTGCAATCTCGGAA GGGCTTGCGGAAGCTTTGATGATGTGCACGCCTTTGAATGGGAAACAACC TCATCAAAATGTAGATAAGCAAAGGCATTGCATTCTCGTTGCTGCAAGTA ATCCTTTTCCCTTGCCTACACCAGTTTTTCGACCACAAATTCCTAAGTTG GAGCAAAGTGAAAACACTGAGTCACAGAAAGAGAGCCGTATATCTGATGC TGAGACACTTGCGAAATTCTTTCCCCAGTTATCTGTTTCTCTTTCAGTTA TATCTCCTAAACAGTTACCAAAACTCAAAGCAATCTACAATGCGGGAAAG CGCAATCCTCGAGCAGCAGACCCTCCTATTGACAATGTCAAAAGCCCTTA TCATCTTGTTTTAATATCTGAAAACTTCATTGAGGCTCGCGCTGCATTAA GTCGGAATGGAATTGCTCCCTTAGTATCAAATCACAGTCCTATGAAAGTT GATACAACTTCAGTTATGAAAGTAGATACCTCTCCTGTTCTTCCGGTTTC AGTTTCGCCTCCAACTTCTGTTCCTTCAGCTAACGGATCTGTCATGAATC GGCAACCAATTATCGTTGGAAATGTGACCCCGACTATTGTGAAGATTGAG CCAACCACTGTGACGTCGATGGTTTCTGGACCTGCATATCCACATGTTTC ATCAGTCCCACGTGCTGCTTCACAAGGAGTTCCAACCTTGCAAACTTCTT CACCACTATCTGCTCCCCAGGAGATGATCCCAACTACTGAGACTGTGCCA GATTTAAAACCTCCAGTTACTGGTCTGTCACAACCTTTACGTCCACTGGG TCCAGCAGCAGCAAATGTAAGCATTCTAAACAACCTCTCTCAAGCACGAC AAGTGATGAATTCTGCAGCCCTTGCTGGTGGTACTTCAATAGGCCTTCAG TCGATGGGTGGAACACATATGGCAATGCATATGTCAAATATGATATCTAG TGGAATGGTATCCTCTGTACCTCCTACACAGACTGTTTTGTCTTCGGGCC AATCAGGCATGACGTCAATTGCTGCATCGGGACAACCAGGTATGACATCA ATGGCTGGGACCGGAGCATTAGCAGGAAATGCGCAGGTTGCACTTAATAC CAATTCGGGTTCATTTGCTTCTGCATCTTCCAATCTGTCTGGAAATTCAA ATCTGGGCATGTCACAGCCAATGGGTAATACTCAAGGAGGTGTTAATATG GGTCAATCAGTACCTGTAGTGAGTCAAGCAAATATTTCATCAACACAGAT GGCTCAAAATGGAATCGGAATGAATACAAATATGATTAGTGGTGTTAGTC AATCTGGTATATCTTCTGCTAATGGCACAATGATGCCGACTCCTGGAATG GGTCCACAAGGACAACCTGGACCTCAGTCTCTTGGGATGGCTAATAATGC AGCAGCAAATATGCCCATTCCTTCGCAAGCATCGAATGCCATGCAATCAG CACCATCACAATCTAAATATGTGCGAGTATGGGAGGGAAACTTATCTGGG CAGCGACAAGGCCAACCTGTATTTATTACCAGATTAGAAGGGTACAGAAG TGCATCAGCTTCAGAAACGTTGGCAGCTAATTGGCCACCAACTATGCAAA TTGTAAGGCTAATATCACAGGACCACATGAATAACAAGCAATATGTTGGG AAAGCGGACTTTCTTGTTTTTCGGGCAATGAACCAGCATGGTTTTCTTGG GCAGCTGCAAGAAAAAAAGCTTTGTGCAGTTATACAGTTGCCATCACAGA CATTGCTGCTATCAGTTTCCGATAAAGCCTGTCGTTTAATTGGAATGCTA TTTCCTGGGGGTCGACAGATGGCAAGTCAAGGGCAAGTTACATCCCAAGG TCCACCGAGCATGCCTGGAGGAGGGAGCTATCTAAGTTGA
Pep:
>DCAR_026720pep MAEKQLIVVVEGTAAMGPHWQTILTEYLDKVIKSFCGYDSTTQKPSVPVE FSLVVFNAPGNYSACLVQRSGWTRDVDNFFQWLSAISFSGGGFSDVAISE GLAEALMMCTPLNGKQPHQNVDKQRHCILVAASNPFPLPTPVFRPQIPKL EQSENTESQKESRISDAETLAKFFPQLSVSLSVISPKQLPKLKAIYNAGK RNPRAADPPIDNVKSPYHLVLISENFIEARAALSRNGIAPLVSNHSPMKV DTTSVMKVDTSPVLPVSVSPPTSVPSANGSVMNRQPIIVGNVTPTIVKIE PTTVTSMVSGPAYPHVSSVPRAASQGVPTLQTSSPLSAPQEMIPTTETVP DLKPPVTGLSQPLRPLGPAAANVSILNNLSQARQVMNSAALAGGTSIGLQ SMGGTHMAMHMSNMISSGMVSSVPPTQTVLSSGQSGMTSIAASGQPGMTS MAGTGALAGNAQVALNTNSGSFASASSNLSGNSNLGMSQPMGNTQGGVNM GQSVPVVSQANISSTQMAQNGIGMNTNMISGVSQSGISSANGTMMPTPGM GPQGQPGPQSLGMANNAAANMPIPSQASNAMQSAPSQSKYVRVWEGNLSG QRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVG KADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGML FPGGRQMASQGQVTSQGPPSMPGGGSYLS*