Resource Type:
Genetic Marker
Name:
MK002114 ESSR-009
Identifier:
MK002114_ESSR_009
Organism:
Marker Type:
SSR
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK002114 ESSR-009, is adjacent to primer, ESSR-009-F. |
| The genetic_marker, MK002114 ESSR-009, is adjacent to primer, ESSR-009-R. |
| The genetic_marker, MK002114 ESSR-009, is located in gene, DCAR_026720. |
| The genetic_marker, MK002114 ESSR-009, is located in gene, LOC108199593. |
| The marker_locus, ESSR-009, is an instance of genetic_marker, MK002114 ESSR-009. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Br1091×HM1 | Chr8 | 8.586 | ESSR-009 | MapViewer |
| 2015 Br1091×HM1 | Chr8 | 8.586 | ESSR-009 | MapViewer |
| 2016 Integ NG bin map | CH8 | 55.023 | ESSR-009 | MapViewer |
| 2013 10117 B | LG08 | 0 | ESSR-009 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr8 | 49.545 | ESSR-009 | MapViewer |
| 2013 10117 A | LG08 | 8.8 | ESSR-009 | MapViewer |
| 2016 Integ NG full map | CH8 | 59.828 | ESSR-009 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1F3 | Chr8 | 54.242 | ESSR-009 | MapViewer |
| 2016 70349 NG full map | Chr8 | 4.239 | ESSR-009 | MapViewer |
| 2014 70349 | Chromosome_8 | 4.239 | ESSR-009 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr8 | 49.545 | ESSR-009 | MapViewer |
| 2015 MB Merged | Chr8 | 49.545 | ESSR-009 | MapViewer |
| 2016 70349 NG bin map | Chr8 | 4.239 | ESSR-009 | MapViewer |
Synonyms:
- MK002114
Sequence Coordinates:
DCARv2_Chr8:29359504..29359801+
View location in JBrowse:
Sequence:
ATCTGGGGAACTTGCTGTTGCTGCTGCATTTGCTGCTGAGGTTGCATCTG
GGGAATTTGCTGCTGTTGCTGCAATTGCGGAAGTTGCTGCTGCTGCTGCT
GCAACTGGGGAATCTGCTGCTGTTGCTGCAATTGCGGAATCTGCTGCTGT
TGCTGCAGCTGAGGAATTTGCTGCTGCAGCTGTGGAACCTGTTGCTGCTG
TTGCAACTGCGGCAGAGGCTGTTGCTGAAGCTGTTGAAGCTGCTGCTGGT
GTTGT
Sequences:
>MK002114_ESSR_009 ID=MK002114_ESSR_009; Name=MK002114 ESSR-009; organism=Daucus carota; type=genetic_marker
ATCTGGGGAACTTGCTGTTGCTGCTGCATTTGCTGCTGAGGTTGCATCTG
GGGAATTTGCTGCTGTTGCTGCAATTGCGGAAGTTGCTGCTGCTGCTGCT
GCAACTGGGGAATCTGCTGCTGTTGCTGCAATTGCGGAATCTGCTGCTGT
TGCTGCAGCTGAGGAATTTGCTGCTGCAGCTGTGGAACCTGTTGCTGCTG
TTGCAACTGCGGCAGAGGCTGTTGCTGAAGCTGTTGAAGCTGCTGCTGGT
GTTGT
This is the primary representative sequence for this feature.
Sequence Length:
255
Repeat Motif:
(TGC)6