DCAR_008644 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_008644

Identifier:

DCAR_008644.gene

Locus Tag:

DCAR_008644

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_008644, is a part of gene, DCAR_008644.
The genetic_marker, MK002241 ESSR-136, is located in gene, DCAR_008644.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_008644	DCAR_008644.mRNA	mRNA	DCARv2_Chr2:43706611..43717156

Sequence:

ATGTATCCTGGCTGTAGATTCTTGGATTTTCACCCCCGGCAGATGGAACA
AATGTCTTATGCTCCCCATCACTGCCCTGGTCTTGGATATGTGAAGATGG
ATACTGCGAGGCCCCCTGTCGCCTTTCCTTGTTATGCTTGTCCATATCCA
TTGCCGTACTACGGCTGCTATCACAACCACAACCAAGTTCCGGAATATCC
TGCTCATCATCCTCATTATGCACCACCCCCGCCAGTTTATTGTCATGGAA
ACTACCCTCCGCTTCCAGGAAACTACCCCTTTCAATATCTTCCTACTCAG
CATTATTCTGTGGTGGATCCACGTTATGAGTATGACAAGAAGGGTCCGGT
AGATCATCATTGTTGTGGATGTCCAAACTACCTGTGCCAGCAGAAGGAGA
ACAAAAATGTCAAGATCGAGGAACAAACTTTCGATAATGACAAGGACAGA
GTTGTCTCTTGGGTTCCTCCTGAGGTGAAAGATCAATCATATCCACTTCT
ATGGATTCCACCAGGCTACAAAAGAAGTGAACAAGGTGAACAAACTATTA
AACCAGAATCTAATAGCGAGACCAGTCTTGACAAGGAAGCCAAGGAATGC
TTGAAGCCTCGTGGGCAGGAGCCAGGTGTTTGGAGCGGGTGGTTACCCAT
AGATCTAAACAACCTTAAATCTCTAGGACAGGTGAAAGGCGATGAAGGGA
CTGAACCTCAACAAAACGAGGAATGTAAAAGTTCATATCCAGTGGGTTTC
ATGCCTTGCAATCCCAAACAGGACAAAGTGGAGCATAAAGATGGAGATCA
AAAGTCTATTTGGGATCCTTCACAGTATGGAATATTTCCTCTAAAGTTTA
TTGAAAATCAGGATAAGAAGACTATGCCTGAGGGAGATACAGAACACCCT
GAAAAGTTTAGATCAGAGGATGGTCCAAGGCCCGGAGATAAAAATGTCGT
AAAGAAGATTATTCCGGTTAAACAGATGGATCAATCTGAGGAGAAAGGAT
TTTTAAAAGATGGTCAAACCGAGGAAAATCGGGCACCAAAAGTTGAGAAG
AACCACAGTGAAATGCATTTGAAGCATACAGATAAGAAAGGTGAGAAGAA
ACATTTGGAAAACAATAGCAATGGGCAGTCTTCCCATTCGAAAACATCAA
AGTTGCCCCCTGTTTGTCTACGTGTTGATCCACTGCCAAGTCGAAGAACC
AAAAGTGGAAGCTCGAGGTCTCCAAGTTCTCCAGCAAACCAAAAAAATCC
AGATATGTTGTCACGCGACAACAAGTCTTCTTCCTCATCAACTGTGCAAG
CAAACAATCAGCAAGATGTGCAGTCCTCTGCAGACTCAGATCTAGGCAGA
CTTCAGAACGAAAAAAAGGTAAAAAATATTGAAGTACTTGACAGTACGGA
GAGTAACATTAAGAAAGAAGCCTGCAAAGAGGATTTATCTCAGTCTTTCG
CTGATGCTTCAGCCTCTGACTTGCAAGAGAAGGTTTCAAGCGGTTCTGAA
GAAGGAAAGGGTGAAAATAGTGATCAGGAAAATTATGTAGGAGTTAAAGG
AGTTAAGGATGTGGATAACTTATCTGAAGATCTAAAAAAGGATGAAGAGC
TAACAGTTGAGGGTCAATCTGGTGATGTTAAAGGTGAAACAGGAGCTACT
GGAGGGCCTTTAGATACGAGGGAATCTGAACTGGGAAGTACCAATGGAGC
ACCATGCCAGAAGTTCTCAGATGCTGAAGCAGCTGCAATCATTCAATCAG
CATATCGGGGATTTGGAGTTAGGAGATGGGAACCTTTGAAGAAATTGAAG
GAAATTGCTAGAATCAAAGGAGAACTGATCAAGGTCAGGCAAGATGTTCA
AAATCTTGTTTCCTCGGGTAGCGGGAATGTTGACAAACAGAGGATATTGA
TTGGAGAAGCTATAATGAACCTTTTGCTACAGTTGGACACAATGCAGGTA
AGCATTCTTTTAATCCTGAGTTTATGTTCAAAAGAATTCTAAGTAAAATT
ACTGAAGATGATGGTGATAGTTAAGAAAAACTCACAACCAATATTAGCAA
GCACCAGCAACTTATAGAGAAGAAAGAAGGAAACATTACATCAAAACTCT
GATTCTGGTAGGATTATGAAATTGTTAAGAATACCTGGAGTACATAATTA
TTTTCAGAAGCGGAAATGTTTATATTATTCAAAAAAATTTAACTTATTAA
CTTGTAGCTGATTTTCTATGAGTACTCGGTGCAGCTAAGTGGAGTATGTA
GCGTTTGAGTGGCAATCCTTAGATTCAAAGTTTCTTCTTGTTCTTTTAGC
TACTTGACCATTATGCAACTTGTTTATTGATTTTTTAGAATGCTAACATA
GTCCACTCTTAATTGTACACCAGGGTTTGCATCCAAGTATTAGGAACATA
AGGAAAGCTGTAGCAAAAGAACTTGTTAGTCTGCAGGAGAAACTTGATTC
CATTACTTTTCAGCATTCTGATGAACTAAAGGAATCTGATAAATCCGAAC
ACGTTGAAGAAATTTCCGAGAGAACCGGTGAGGAGGACTTGGTAAAACCA
GGGGAAGACAGACATGAGCAAGAAACACCCTCTCCTAGTTATGTGAAGTC
TGGTGCAATAGAACTATGTCAAGACAAACCTCACACAGTGATGGACATGA
ACATTAGCTCAGTTAATACGGGAAAATCAGAACTGTTGTTGGGCACAGAT
GAAATGGGCAGGGCTTTGGAAGAGAGAGTGCAAGATTCTTCAGGTTATGT
GGACCTGAAAGATCGGCAACTGGAGCCACTCGTTGAAGTAAGAGAACCAA
GTGAAGCGCATGATGTTGGTGCGAAAGAGCTTCCTCCTCTGATAGCTGTT
GAAGAGAAGATTAACCCTCCTGTTCAGTTACATGATCCATCTTCTCTGGT
CGACTCCAATTGGTCAAGTAAAGAAGACGAAGAAGATACTAAGGTATATA
CAGAAGTGTCATCTCGTGTGTCTCAGCAGAATTCTGAAGCTCAGAATTTT
GATGAGGGCTTGCAAATCGATGGCGGTAGATGTATAGTCAAACCAGGTGA
ACTAAAGGATCATGACTCTTTTCAGGTCGAGTCGAAAGAGCTTCCTCCTT
CCATAATTGTAGAAGAGAAACCTAACCATGTTGTTGAGTTACAGAATGCA
TCTCCTCTGTTTGACTCTGGTTGGTCTAGTAAAGAAGATGAAATTACCCA
AGTATATGGAGAGGTGCCTCTTCCAGTGCGATGTCGACTTGAACTTGTTG
AGGAGTCTGGTCTGATTTCACTGGACAATGAAGCCAAAGAAACTAGTGCA
GAGGGGGAGCCACACAAAAAATTGCTTGCTGAATCTCCAAATTTGTCAGA
TCTGGAAGGCAATATTGCAACAGCAGTATGTTCAGAAGGCTCTCCTAAGC
CAAACAATAATTTAAGCGCCGTAGGAGATTTAGAGAGAGGCAAGGAACTT
AGTGGGGATGACATGCTTGGAGCAGATTTTCTGGACTCAATTGCGTTAAA
GGAGAAACATGTCAGTAATAGAGAAGCAGTAGAAAATGTATGTGTTGTTG
AAGGGGATGAGAAGTCAGTCAATAACACGCTGACAGCAACTGGCATGGTT
GACACATGGGAAATATCTGACGTAAAAGAAGTAGCGAATGCTTGTCAGTT
TGGAAGGGAAGGGGATGATAAGCCAGTGCATGACAGGCAGACAGCAGATA
ATGTCAGGGATGAGGCCAAGGAAATGCCTGGTATAAAAGAAGCAGTAAAT
GTTTGTGAGGTTGAAGGGAATGATAAGCCAGTTGATGACGTGCAGGCAGC
AGACATTGTTGGGATTGAGCATTGGGGAACAGGAGAAGATAATGAGTTTG
AAAAGGATGTTGGATCAGTTAAAAACATGGAACTTATTGGAACTTGTGGG
ACTGAAGATGCAGTATCTGGCGAGGTGGTCCATCCAGAAGAGACCGGAAT
CTGTAACATTAAACAGGAAATGGAAGAGGATGAAAATCAGGATATGTGGG
AAGATAAGTTTGATAACAAGGAAATCTGTCAAAAACACAGTGATGGTAAC
ATATTTGAGATCCCGAGAGACGAGCAATTGCTGGTGAAAGAGCTTGACAC
TGAGAAAGTCAACAAGCAACCTCACAGAGAATGTGCAGCTGGAGAAGAGG
ATTTGGCAGGGGAAGAGCTTGTTGCCGAGCTACCACAGAAAGAAGTTCCA
GCATCATTGCCGATCTTGGGCCAAATCTCCAGTGTTACTGAAACAGAAAG
TGACAAAAAGTTGGCCATAGAGAACGAGGAGCTGAAGGAAGCGGTGGAGA
AGCTAATTGCAGCAGGGAAAGAACAGCTGACTGCCATATCTAGTCTGTCG
GAAAGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGAAAGAGTGAAGGACTTGGAGAAGAAATTATCAAGAAAAAAGAAGCTGA
AAATGAGAAGACAGAAATCTCCGGGTCAGTATCTTCTTCAAGTGTAATGC
CTTGAATGTACGTGTAAAATAAGGTGCAGTGTGATCTATAATGAAAACCA
GTATGTTTTATGTAAATGTTTTGTTGTAAGAGTCTATCAGAAGGTCTGTA
ACTTGGAGTTGTTGGATTTTGAATAAATTTACTAGCTTTTGCTTGTTCAC
CTGCAATGTACAATGTGTATAGCACTTTGAGAGTCTCAACTGTACCAGTT
TATGTTATGCATACACATGTTTTGAAACCGATGAATCAATTTATTCATAC
GAGCAAATCAGTAAGAGCGTGTCTGAATCTTATTTATTAACGAGTCAGGT
TCAATCTTTTGGGCGTGTAATTTTTAAGCTAATGATATACCCTTATTTAG
TAACTAAATTACTATATAATCTCTAAACTAGTAATAACAAACCGTTTTTT
GTTTTAATTCTTATAAACCTCTGCCTCGGTATTGCACACTCGTATACCCG
CCTTTGTCTGCGTTTACATGGACATCTCAAGAGACTACAGGAAGCAAGTG
CCAGGAAATTTCCATCAGTGAGAAATTTCATTTGAGGTTTATGACTCTGG
AACCCTGTTGTGGACTAACCCTTATGGCAGAAATCGTGACCGGTTGGAGT
GGTGGTGATGAAAGTGTGATATGCAGCGGGGTTTTGTACTTGTTGATTTA
CTCAACTGGGGGTGGCATTCTAGAGAATCGTCATAGACTGTTAGCATATA
GTCTCCCGTTGATTGTTGCATGGTTTGTTGATGAGAAATTTTATCACTAT
GCCATGTCCTCTCACTTGTGGTCGTTTGATGAAACTAAAGGAAAAGTTGG
TAATGGTTGGAGGATAGGGAAACATGATCGACCTGGCAAATTAAGGGCAT
TAGGATCTGGGTCCTGATTGGGTGCCCCACAAGTTATATCAGGGGATTTG
GAGGGTTTGATGATGTTTTTGCTAGCAGTGGTGCAGATGACCTGATATAC
AGTCAAAGCTACGGCTGTCCTGCTCTTCTTGTCTCTGATTTTAACCAGAA
GCAATGGAAATGGTCTCAGAAATGCCAGTAACCAAGAAGTTCCCCCTTGA
GCTCTTTACTGGATTTTGCTTTGAGCCAAGACTTGATATTGCTCCCTGAT
TTGCATTTTGTTGCAATGCTTTACATGGTACTGGCAAACTTGAGTTGTTA
GCTGTTTTGTTAACTTTGTCTTTGGCCTCAACTTTTACTTGCTATGAATT
CTCTTAAAGGCTTATAGAAAGGAAACCAGCCAACGAGGCTGTTCAATCTT
GTAACCAGAAAATTATACTTTTTGCTAATATGATGAGCGTATTAGACTTA
ATGAGAGTCTATTATGTTGTGACATTGCTACCCAAAGCTTTTTGTTTTCT
AGTTTCTAGGCTGCTGCATTGATAAGCTTGTTAGTGTTTTGCTCTTTAAA
TATAGGATGTGGTGTAATGAACCTACAATTCTATACGCGGTTTCGGATTA
CATATTCCCACCACGGAGTGCCCTGTTCAGAGGTTGAAGTTGCGATTTAT
GTGGTTCTGTAATGCTTATACATACCTGACTGGATAATTTGGAGAGTTTG
ATGCCCATGTGCTAGATGTCTCTCAACCATGAGGAATTATTGGTGATGGG
ATTTTTCCTAGTCATTTAATTTCTTGATGTTTGTAACATGAAACATATCT
AAAACTGGCTACAGCTCCTTGTATGTACAATGTGAGCCTTTTCTTTCTCA
TCAGCTGTTAGCTTCGTTGACTAAGTGGCCTTTAGTCCAACTAGTCACCA
CCAGGGTTGGTTTATGGGCTTTGTTGCCTGACACATCTCAAGTTATCACC
TTCTCTATAACATTGTTAGATTATCGCAGACTTTCATTGGTCTATGTCTC
GCGTGTTTGTTCAGATCACCCATTTTATTCTTGTCATGTTTGTTACGACC
CCCTCGATGTCCAGTCAGCTACTGCACCTCAGACACATTTCTGGGGAGTT
TCGTTTTGTATTACACATTACATTCGTAGCCGCGTCTGTAAAATGACCTA
TCGTAAAATGTTTATCGACTAAAAAATGTTACACAATATAACAAAGACAT
GTTCTGCAGGCTTTTATTTGATATTAGTACCATGCGATGATTTGAGTTGT
AGTTATCAGAACTAGTGTAATATATACAGTATATATTTGTCCTGATTGTT
GGGTGGGTGCATTCAACCTTGCCCAGATGGAGATGCTGCATTGCAGAGCA
GAGCAGGTATGACACTCTTAACTGCTTCATGTAGATTGTCCTGTCAATAC
CCTTGTTCTAAATCAAGGACCACAAATCTAACTCTATTCTCTTGTCCATT
CACTAATAATAATGCTTCTGGTCCACCCACAACATTTTTCCAAGGGGAAA
TTAAACATCTTTAAGTCCCAAAGAAAATAAGTCATGATTTTTAAATAAGT
GTGAGTGGTAGATGACAATTTATTGTTTTAACCTAGTGAATAGTATATGT
GTTAAAAGACTATTATTCCGAGACAGAGAGAGTAGTAACGTATTAACAGG
AGGAGGCGATGCTGTGAAAAGAAAGTAAAGCAGGGGAGAGTCAAGAGACA
TATAGTCATGAGTGATGGTGAACAAAGCTTGAAGGGTAACATGGAAAACC
AATGGACCACAACATCACTTGACCTCTCCTTCTGACACATTTTTCGTTGG
TCCATCTGTATCTGTTGCATGCAATGCAAATCTAGGTCTGGACCTCATGT
AATCATCAATACCGGTAAAACGGGTGCTCATTTTTCATTTTTTTTCCTTT
CTGAATTTGTCGGCCTATTATTCATAAAATAAAAACAAAAATTCGTAAAT
AAAAGCTCATGAGCATGCTTGCTGCATGTATCTTTTATCAGACTTCCCCA
AATATACTGCACTGAGTACCTATATCACTAGCCACTAGCCACTCCAATCC
TACTACCACAGATGTTATTCTTTTCAGGCATTACCTTCATTTGTTGACAC
CATGCAAATCAAACACATTATTATTGTCTGCAGAAATACTACTACATTTT
GAAAATCTTGACGGAGGGGAGACAAGATAAAAAGACAAAGGTCAAAAAGC
AGGAGAAATTCATGGGAATAAAGTTGAAACACAATGTTTTTCCAGGGGGG
AAAAGGGGAGGTTCAACTCCAACCACAAGTTGGAAAATTGGGCTTGCTCA
TTCTGATGGTTCTTTAGTCCATGTTCACAATTCCAACACTCTCTCTGCCA
GAACACTTGGTGCCAATCTCAACAAGACTCACACACATATTAAGGCCGCC
AGAATGAACAAGGCTGACTCTGGGATTGCTCACTGCAATGATGAGGAAGA
GGAGTGTTTCCAGCTTTGTAGTCATGTGGCTGACCCTCCTGATGACACAG
AAGAGCAGGTACATTTCCAACTTTTATGCATTTTGTTGGACTGTTCATAT
AATTAGTAATCGAGATGAGATTTCTTTACTTGCTTTATATTTTTTGTAGC
CAACCAGTGCTGGTAGTTTAAGAAGACATATAGCTGCTACACTATTTCGA
CACCATCGATTTGTCGGAATAAATGGCCATGCCCTGCAGCCTGTATCGTT
GGCAAGCCCTAGTAGCTCACCGGAGGTATTTCACTCTGTAATGTTCTCAC
GACTCTTTTGCACAATGTAGATCCTGGTAGGAGAAGCACGCCTTTTACAT
ATCAGAGTTTATTTCTAGTTTATAGATTTTGTTCCTGATAAAACGTCTCC
TGAAATTTCTAAAGATCGCACTAATGAAGATTTTTCATTATCAGATGAGA
TTCGTAGAAATATTAAGTTTGGTACAATTGAAATTAGTATGAAATAGTTC
CTCTACTCAGTTTCTGCGTACTTAAATCATCCTTATCCAGGTTATTTCAT
CTTTTGTTAATAAAAAACACTTCCGAAATAAGAACTCATGAACTTCAAAT
CAATCCAGAGAATATGTCAGAATGGTTTTGCTTCTTGCAGGCTGCGCCAT
ACTACTCTGCAGTCACTCCGGCAAGTCCTTTGGACTTGACAGATCAAGGA
GAGTTCAGTTACAATGTTAAGACATCTGCGGAGTTGCTTAAAGTACTTAA
CCTCATTTGGAGTTTGGAAGAGCAACATGCTGCTAATTTATCATTGATGA
AGACACTGCAAAGGGAACTGGAACACTCTCAAGAACAAATTGAAAAGCTG
CTACAGGAAAAGAGAAGAGGACGGGATATAAATAAGATTATGGAACATAA
CTCTTTGGATACACCACTTAGGAGAGCAAAGGAACAAGTCCCAACCAGAA
ATGCAGTTCTGTCTGTGAGGGATGAGCTGGAAAGTGAGAGGAAGTTAAGA
AAACAATCTGAAAGTCTTTACCTAAAACTAGCTCAAGAACTTTCCCAAGT
AAAATCCTCCTTTTCTAATTCTCTGGAAGAATTAAAACGTGAGAGAAAGG
CACGTATTCTGTTAGAAAATTTGTGCGATGAATTTGCCAAAGGAATTACA
GATTATGAACAAAAGGCCAGGTTTTTAAAACACAGGCCTGATGAGGGTTT
GTTTTCAAGGGAACGCCCCGATCAGCTGATTCTTCACATTTCTGAATCAT
GGCTAGATGAGCGGATGCAAATGAAACTAGCAGCGACTCCATGTGGTACT
ACTGATAAAAGCACAATTGTGGAGAAGTTGAGCATGGAAATAGAATCCTT
TCTTCAGTCCAAACAACCTGTTGTTTCCAGATATGTTGATGGATTAAGCT
TAAAAAAGGTGAAGAAAAATAGCTCACATAGATATTCTTTGGAGTCCTTT
CATTTGAATGATGTTGCAAGTGCTCCTCGGGATGGGGATTGTGAAGAGGA
TTCTACAGGTAGTGTTTTGAACTCTTTAGCTTTCAATAAGCATTCGAGTG
GCACAAGAATGAATGGTGCCTCCAAACTAATTATTGACCGTGGTAAAGAT
TTAATAAATTCAGATCCTAGTAGAAATAAAATCCAGACCAGGGATGTCTT
CAAGTGCAATGAATATCACTCTAGCTCACAAAACCAGTCCCACAAACATA
GTTTTACAACTGTGTCATGTGATGTGAACAATGTTCGAGTGGACAAGTAC
AAGAAATCACAAAGTACTGAAGCTTCAAAAGAAAGAAAGCAAATAAGAGC
AGAATCCCATGATTTCCACCCAGACGATGTGCTCCATTCTATAACTAGAA
ATCATTCTGTGTCCAGGAATGATGGAAAGCTTCACAGTGAGAAGCCCTGT
ACGGAAGATTCTTTAGATCATTCTGCATCCTCAAATCATCCCATGACAAT
CACAACATCAAAGCCAGAAATTTCTGAATCTTCAAGCCAAGGGCTTCAAA
TTATGAAGAAACACTCCTTAAAGGCCAGGCTACTTGAAGCAAAGTTGGAG
AGTCGGCATTCTCTAATGAAAAATTCTAAAGCCCCTATATATTGA

Sequence Length:

10545

Sequence Checksum:

baa191d40eacc6ec4af862dc75d8b057

View location in JBrowse:

DCARv2_Chr2:43706612..43717156-

Cds:

>DCAR_008644cds ATGTATCCTGGCTGTAGATTCTTGGATTTTCACCCCCGGCAGATGGAACA AATGTCTTATGCTCCCCATCACTGCCCTGGTCTTGGATATGTGAAGATGG ATACTGCGAGGCCCCCTGTCGCCTTTCCTTGTTATGCTTGTCCATATCCA TTGCCGTACTACGGCTGCTATCACAACCACAACCAAGTTCCGGAATATCC TGCTCATCATCCTCATTATGCACCACCCCCGCCAGTTTATTGTCATGGAA ACTACCCTCCGCTTCCAGGAAACTACCCCTTTCAATATCTTCCTACTCAG CATTATTCTGTGGTGGATCCACGTTATGAGTATGACAAGAAGGGTCCGGT AGATCATCATTGTTGTGGATGTCCAAACTACCTGTGCCAGCAGAAGGAGA ACAAAAATGTCAAGATCGAGGAACAAACTTTCGATAATGACAAGGACAGA GTTGTCTCTTGGGTTCCTCCTGAGGTGAAAGATCAATCATATCCACTTCT ATGGATTCCACCAGGCTACAAAAGAAGTGAACAAGGTGAACAAACTATTA AACCAGAATCTAATAGCGAGACCAGTCTTGACAAGGAAGCCAAGGAATGC TTGAAGCCTCGTGGGCAGGAGCCAGGTGTTTGGAGCGGGTGGTTACCCAT AGATCTAAACAACCTTAAATCTCTAGGACAGGTGAAAGGCGATGAAGGGA CTGAACCTCAACAAAACGAGGAATGTAAAAGTTCATATCCAGTGGGTTTC ATGCCTTGCAATCCCAAACAGGACAAAGTGGAGCATAAAGATGGAGATCA AAAGTCTATTTGGGATCCTTCACAGTATGGAATATTTCCTCTAAAGTTTA TTGAAAATCAGGATAAGAAGACTATGCCTGAGGGAGATACAGAACACCCT GAAAAGTTTAGATCAGAGGATGGTCCAAGGCCCGGAGATAAAAATGTCGT AAAGAAGATTATTCCGGTTAAACAGATGGATCAATCTGAGGAGAAAGGAT TTTTAAAAGATGGTCAAACCGAGGAAAATCGGGCACCAAAAGTTGAGAAG AACCACAGTGAAATGCATTTGAAGCATACAGATAAGAAAGGTGAGAAGAA ACATTTGGAAAACAATAGCAATGGGCAGTCTTCCCATTCGAAAACATCAA AGTTGCCCCCTGTTTGTCTACGTGTTGATCCACTGCCAAGTCGAAGAACC AAAAGTGGAAGCTCGAGGTCTCCAAGTTCTCCAGCAAACCAAAAAAATCC AGATATGTTGTCACGCGACAACAAGTCTTCTTCCTCATCAACTGTGCAAG CAAACAATCAGCAAGATGTGCAGTCCTCTGCAGACTCAGATCTAGGCAGA CTTCAGAACGAAAAAAAGGTAAAAAATATTGAAGTACTTGACAGTACGGA GAGTAACATTAAGAAAGAAGCCTGCAAAGAGGATTTATCTCAGTCTTTCG CTGATGCTTCAGCCTCTGACTTGCAAGAGAAGGTTTCAAGCGGTTCTGAA GAAGGAAAGGGTGAAAATAGTGATCAGGAAAATTATGTAGGAGTTAAAGG AGTTAAGGATGTGGATAACTTATCTGAAGATCTAAAAAAGGATGAAGAGC TAACAGTTGAGGGTCAATCTGGTGATGTTAAAGGTGAAACAGGAGCTACT GGAGGGCCTTTAGATACGAGGGAATCTGAACTGGGAAGTACCAATGGAGC ACCATGCCAGAAGTTCTCAGATGCTGAAGCAGCTGCAATCATTCAATCAG CATATCGGGGATTTGGAGTTAGGAGATGGGAACCTTTGAAGAAATTGAAG GAAATTGCTAGAATCAAAGGAGAACTGATCAAGGTCAGGCAAGATGTTCA AAATCTTGTTTCCTCGGGTAGCGGGAATGTTGACAAACAGAGGATATTGA TTGGAGAAGCTATAATGAACCTTTTGCTACAGTTGGACACAATGCAGGGT TTGCATCCAAGTATTAGGAACATAAGGAAAGCTGTAGCAAAAGAACTTGT TAGTCTGCAGGAGAAACTTGATTCCATTACTTTTCAGCATTCTGATGAAC TAAAGGAATCTGATAAATCCGAACACGTTGAAGAAATTTCCGAGAGAACC GGTGAGGAGGACTTGGTAAAACCAGGGGAAGACAGACATGAGCAAGAAAC ACCCTCTCCTAGTTATGTGAAGTCTGGTGCAATAGAACTATGTCAAGACA AACCTCACACAGTGATGGACATGAACATTAGCTCAGTTAATACGGGAAAA TCAGAACTGTTGTTGGGCACAGATGAAATGGGCAGGGCTTTGGAAGAGAG AGTGCAAGATTCTTCAGGTTATGTGGACCTGAAAGATCGGCAACTGGAGC CACTCGTTGAAGTAAGAGAACCAAGTGAAGCGCATGATGTTGGTGCGAAA GAGCTTCCTCCTCTGATAGCTGTTGAAGAGAAGATTAACCCTCCTGTTCA GTTACATGATCCATCTTCTCTGGTCGACTCCAATTGGTCAAGTAAAGAAG ACGAAGAAGATACTAAGGTATATACAGAAGTGTCATCTCGTGTGTCTCAG CAGAATTCTGAAGCTCAGAATTTTGATGAGGGCTTGCAAATCGATGGCGG TAGATGTATAGTCAAACCAGGTGAACTAAAGGATCATGACTCTTTTCAGG TCGAGTCGAAAGAGCTTCCTCCTTCCATAATTGTAGAAGAGAAACCTAAC CATGTTGTTGAGTTACAGAATGCATCTCCTCTGTTTGACTCTGGTTGGTC TAGTAAAGAAGATGAAATTACCCAAGTATATGGAGAGGTGCCTCTTCCAG TGCGATGTCGACTTGAACTTGTTGAGGAGTCTGGTCTGATTTCACTGGAC AATGAAGCCAAAGAAACTAGTGCAGAGGGGGAGCCACACAAAAAATTGCT TGCTGAATCTCCAAATTTGTCAGATCTGGAAGGCAATATTGCAACAGCAG TATGTTCAGAAGGCTCTCCTAAGCCAAACAATAATTTAAGCGCCGTAGGA GATTTAGAGAGAGGCAAGGAACTTAGTGGGGATGACATGCTTGGAGCAGA TTTTCTGGACTCAATTGCGTTAAAGGAGAAACATGTCAGTAATAGAGAAG CAGTAGAAAATGTATGTGTTGTTGAAGGGGATGAGAAGTCAGTCAATAAC ACGCTGACAGCAACTGGCATGGTTGACACATGGGAAATATCTGACGTAAA AGAAGTAGCGAATGCTTGTCAGTTTGGAAGGGAAGGGGATGATAAGCCAG TGCATGACAGGCAGACAGCAGATAATGTCAGGGATGAGGCCAAGGAAATG CCTGGTATAAAAGAAGCAGTAAATGTTTGTGAGGTTGAAGGGAATGATAA GCCAGTTGATGACGTGCAGGCAGCAGACATTGTTGGGATTGAGCATTGGG GAACAGGAGAAGATAATGAGTTTGAAAAGGATGTTGGATCAGTTAAAAAC ATGGAACTTATTGGAACTTGTGGGACTGAAGATGCAGTATCTGGCGAGGT GGTCCATCCAGAAGAGACCGGAATCTGTAACATTAAACAGGAAATGGAAG AGGATGAAAATCAGGATATGTGGGAAGATAAGTTTGATAACAAGGAAATC TGTCAAAAACACAGTGATGGTAACATATTTGAGATCCCGAGAGACGAGCA ATTGCTGGTGAAAGAGCTTGACACTGAGAAAGTCAACAAGCAACCTCACA GAGAATGTGCAGCTGGAGAAGAGGATTTGGCAGGGGAAGAGCTTGTTGCC GAGCTACCACAGAAAGAAGTTCCAGCATCATTGCCGATCTTGGGCCAAAT CTCCAGTGTTACTGAAACAGAAAGTGACAAAAAGTTGGCCATAGAGAACG AGGAGCTGAAGGAAGCGGTGGAGAAGCTAATTGCAGCAGGGAAAGAACAG CTGACTGCCATATCTAGGGGGAAAAGGGGAGGTTCAACTCCAACCACAAG TTGGAAAATTGGGCTTGCTCATTCTGATGGTTCTTTAGTCCATGTTCACA ATTCCAACACTCTCTCTGCCAGAACACTTGGTGCCAATCTCAACAAGACT CACACACATATTAAGGCCGCCAGAATGAACAAGGCTGACTCTGGGATTGC TCACTGCAATGATGAGGAAGAGGAGTGTTTCCAGCTTTGTAGTCATGTGG CTGACCCTCCTGATGACACAGAAGAGCAGCCAACCAGTGCTGGTAGTTTA AGAAGACATATAGCTGCTACACTATTTCGACACCATCGATTTGTCGGAAT AAATGGCCATGCCCTGCAGCCTGTATCGTTGGCAAGCCCTAGTAGCTCAC CGGAGGCTGCGCCATACTACTCTGCAGTCACTCCGGCAAGTCCTTTGGAC TTGACAGATCAAGGAGAGTTCAGTTACAATGTTAAGACATCTGCGGAGTT GCTTAAAGTACTTAACCTCATTTGGAGTTTGGAAGAGCAACATGCTGCTA ATTTATCATTGATGAAGACACTGCAAAGGGAACTGGAACACTCTCAAGAA CAAATTGAAAAGCTGCTACAGGAAAAGAGAAGAGGACGGGATATAAATAA GATTATGGAACATAACTCTTTGGATACACCACTTAGGAGAGCAAAGGAAC AAGTCCCAACCAGAAATGCAGTTCTGTCTGTGAGGGATGAGCTGGAAAGT GAGAGGAAGTTAAGAAAACAATCTGAAAGTCTTTACCTAAAACTAGCTCA AGAACTTTCCCAAGTAAAATCCTCCTTTTCTAATTCTCTGGAAGAATTAA AACGTGAGAGAAAGGCACGTATTCTGTTAGAAAATTTGTGCGATGAATTT GCCAAAGGAATTACAGATTATGAACAAAAGGCCAGGTTTTTAAAACACAG GCCTGATGAGGGTTTGTTTTCAAGGGAACGCCCCGATCAGCTGATTCTTC ACATTTCTGAATCATGGCTAGATGAGCGGATGCAAATGAAACTAGCAGCG ACTCCATGTGGTACTACTGATAAAAGCACAATTGTGGAGAAGTTGAGCAT GGAAATAGAATCCTTTCTTCAGTCCAAACAACCTGTTGTTTCCAGATATG TTGATGGATTAAGCTTAAAAAAGGTGAAGAAAAATAGCTCACATAGATAT TCTTTGGAGTCCTTTCATTTGAATGATGTTGCAAGTGCTCCTCGGGATGG GGATTGTGAAGAGGATTCTACAGGTAGTGTTTTGAACTCTTTAGCTTTCA ATAAGCATTCGAGTGGCACAAGAATGAATGGTGCCTCCAAACTAATTATT GACCGTGGTAAAGATTTAATAAATTCAGATCCTAGTAGAAATAAAATCCA GACCAGGGATGTCTTCAAGTGCAATGAATATCACTCTAGCTCACAAAACC AGTCCCACAAACATAGTTTTACAACTGTGTCATGTGATGTGAACAATGTT CGAGTGGACAAGTACAAGAAATCACAAAGTACTGAAGCTTCAAAAGAAAG AAAGCAAATAAGAGCAGAATCCCATGATTTCCACCCAGACGATGTGCTCC ATTCTATAACTAGAAATCATTCTGTGTCCAGGAATGATGGAAAGCTTCAC AGTGAGAAGCCCTGTACGGAAGATTCTTTAGATCATTCTGCATCCTCAAA TCATCCCATGACAATCACAACATCAAAGCCAGAAATTTCTGAATCTTCAA GCCAAGGGCTTCAAATTATGAAGAAACACTCCTTAAAGGCCAGGCTACTT GAAGCAAAGTTGGAGAGTCGGCATTCTCTAATGAAAAATTCTAAAGCCCC TATATATTGA

Pep:

>DCAR_008644pep MYPGCRFLDFHPRQMEQMSYAPHHCPGLGYVKMDTARPPVAFPCYACPYP LPYYGCYHNHNQVPEYPAHHPHYAPPPPVYCHGNYPPLPGNYPFQYLPTQ HYSVVDPRYEYDKKGPVDHHCCGCPNYLCQQKENKNVKIEEQTFDNDKDR VVSWVPPEVKDQSYPLLWIPPGYKRSEQGEQTIKPESNSETSLDKEAKEC LKPRGQEPGVWSGWLPIDLNNLKSLGQVKGDEGTEPQQNEECKSSYPVGF MPCNPKQDKVEHKDGDQKSIWDPSQYGIFPLKFIENQDKKTMPEGDTEHP EKFRSEDGPRPGDKNVVKKIIPVKQMDQSEEKGFLKDGQTEENRAPKVEK NHSEMHLKHTDKKGEKKHLENNSNGQSSHSKTSKLPPVCLRVDPLPSRRT KSGSSRSPSSPANQKNPDMLSRDNKSSSSSTVQANNQQDVQSSADSDLGR LQNEKKVKNIEVLDSTESNIKKEACKEDLSQSFADASASDLQEKVSSGSE EGKGENSDQENYVGVKGVKDVDNLSEDLKKDEELTVEGQSGDVKGETGAT GGPLDTRESELGSTNGAPCQKFSDAEAAAIIQSAYRGFGVRRWEPLKKLK EIARIKGELIKVRQDVQNLVSSGSGNVDKQRILIGEAIMNLLLQLDTMQG LHPSIRNIRKAVAKELVSLQEKLDSITFQHSDELKESDKSEHVEEISERT GEEDLVKPGEDRHEQETPSPSYVKSGAIELCQDKPHTVMDMNISSVNTGK SELLLGTDEMGRALEERVQDSSGYVDLKDRQLEPLVEVREPSEAHDVGAK ELPPLIAVEEKINPPVQLHDPSSLVDSNWSSKEDEEDTKVYTEVSSRVSQ QNSEAQNFDEGLQIDGGRCIVKPGELKDHDSFQVESKELPPSIIVEEKPN HVVELQNASPLFDSGWSSKEDEITQVYGEVPLPVRCRLELVEESGLISLD NEAKETSAEGEPHKKLLAESPNLSDLEGNIATAVCSEGSPKPNNNLSAVG DLERGKELSGDDMLGADFLDSIALKEKHVSNREAVENVCVVEGDEKSVNN TLTATGMVDTWEISDVKEVANACQFGREGDDKPVHDRQTADNVRDEAKEM PGIKEAVNVCEVEGNDKPVDDVQAADIVGIEHWGTGEDNEFEKDVGSVKN MELIGTCGTEDAVSGEVVHPEETGICNIKQEMEEDENQDMWEDKFDNKEI CQKHSDGNIFEIPRDEQLLVKELDTEKVNKQPHRECAAGEEDLAGEELVA ELPQKEVPASLPILGQISSVTETESDKKLAIENEELKEAVEKLIAAGKEQ LTAISRGKRGGSTPTTSWKIGLAHSDGSLVHVHNSNTLSARTLGANLNKT HTHIKAARMNKADSGIAHCNDEEEECFQLCSHVADPPDDTEEQPTSAGSL RRHIAATLFRHHRFVGINGHALQPVSLASPSSSPEAAPYYSAVTPASPLD LTDQGEFSYNVKTSAELLKVLNLIWSLEEQHAANLSLMKTLQRELEHSQE QIEKLLQEKRRGRDINKIMEHNSLDTPLRRAKEQVPTRNAVLSVRDELES ERKLRKQSESLYLKLAQELSQVKSSFSNSLEELKRERKARILLENLCDEF AKGITDYEQKARFLKHRPDEGLFSRERPDQLILHISESWLDERMQMKLAA TPCGTTDKSTIVEKLSMEIESFLQSKQPVVSRYVDGLSLKKVKKNSSHRY SLESFHLNDVASAPRDGDCEEDSTGSVLNSLAFNKHSSGTRMNGASKLII DRGKDLINSDPSRNKIQTRDVFKCNEYHSSSQNQSHKHSFTTVSCDVNNV RVDKYKKSQSTEASKERKQIRAESHDFHPDDVLHSITRNHSVSRNDGKLH SEKPCTEDSLDHSASSNHPMTITTSKPEISESSSQGLQIMKKHSLKARLL EAKLESRHSLMKNSKAPIY*