Resource Type:
Genetic Marker
Name:
MK000039 LCYB
Identifier:
MK000039_LCYB
Organism:
Marker Type:
STS-Sanger
Publication:
- Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
- Grzebelus D, Jagosz B, Simon PW. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome.. Gene. 2007 Apr 01; 390(1-2):67-74.
- Just BJ, Santos CA, Fonseca ME, Boiteux LS, Oloizia BB, Simon PW. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2007 Feb; 114(4):693-704.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK000039 LCYB, is adjacent to primer, LCYb-F. |
| The genetic_marker, MK000039 LCYB, is adjacent to primer, LCYb-R1. |
| The genetic_marker, MK000039 LCYB, is located in gene, DCAR_020544. |
| The genetic_marker, MK000039 LCYB, is located in gene, LOC108193045. |
| The marker_locus, LCYB, is an instance of genetic_marker, MK000039 LCYB. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2002 B493×QAL Ver2 QAL | LG03 | 76.1 | LCYB | MapViewer |
| 2002 B493×QAL Ver2 B493 | LG03 | 62.2 | LCYB | MapViewer |
| 2011 B493×QAL B493 | LG06 | 57.5 | LCYB | MapViewer |
| 2011 FISH | CHR06 | 17.013 | LCYB | MapViewer |
| 2011 SS1061 | 1061-6 | 6.379 | LCYB | MapViewer |
| 2011 B493×QAL QAL | LG06 | 64.2 | LCYB | MapViewer |
| 2011 SS1061QTL | 1061QTL-3 | 51.76 | LCYB | MapViewer |
| 2007 B493×QAL Ver3 QAL | LG03 | 78.9 | LCYB | MapViewer |
| 2007 B493×QAL Ver3 B493 | LG03 | 72.6 | LCYB | MapViewer |
| 2011 FISH | CHR06 | 18.34 | LCYB | MapViewer |
Synonyms:
- MK000039
- A9P11
Sequence Coordinates:
DCARv2_Chr6:30446723..30447600-
View location in JBrowse:
Sequence:
GGTTTGGATGATTTGATTTTGGATATCTTCACCCACAAATTATTTTTTAT
TTTTAGAAAGAAAATAAAAGAATTTGTTTCAAGTGAGTGCAGCTTACACC
TACTTGATTATATGAAAAATGAGATATGCTTGTATGTATCTCGTCTGTAT
CTACCTCCAATCCCTCTTGCTGCTAGATGGGTAAGTCTTTAATTCTTTAA
CCGTAGCTTTATTTACTTGTAATTCTCCAATATCTTCTGCAGTTATATGT
TTAGTACATGTTTTTATTTTGAACAATTTTTTATTAAGTCACTCTGAAAT
TTCCATTAATTATTGGTGAAAGTTAGCATAAAGGTTGAGAATTTGGGATA
TCTTGGAACCCAGATTTTGTTTTTGGAGATATATTTGGTAAATTAATAGA
ACCATACATGAAAGTGATGGATACTCTACTAAAGACTCATAACAAGCTTG
AGTTTTTCAATCCAATTCATGGGTTTCCTGATAAAGTTGGAACCCTGAGT
TGTTTGAAGTTTCGAAACCAGGAGCTGAGGTTTGGCTCTAGAAGATCGAA
TGTAAATTGGGGGAAGAACGGTTCTGTAAAGGCTAGTAGTAGTGCCCTTT
TGGAGCTTGTTCAAGAAACCAAGAAAGAAAATCTTGAATTTGACCTTCCT
TTGTATGACCCGTCGAATGGCCTTGTAGTGGACTTGGCTGTAGTTGGTGG
AGGTCCTGCAGGGTTAGCGGTAGCACAACAAGTTTCTGAGGCAGGACTTG
CGGTTGTGTCTATAGACCCTTCTCCAAAATTGATATGGCCAAACAATTAT
GGTGTTTGGGTGGATGAGTTTGAGGCTATGGATTTGCTAGATTGCCTTGA
CACTACCTGGTCAAGTGCAATTGTTTACATTGATGACCAGACAACCAAAG
AGCTCGGAAGACCGTATGGAAGGGTTAACAGGAAGCAGCTTAAATCTAAA
ATGATGCAGAAGTGCATATCAAATGGAGTTAAATTTCATCAGGCTAAGGT
TGTAAAAGTTGTACACGAGGAAGCTAAATCCCTATTGATATGTGATGATG
GTGTGACCATTCAAGCTGCTGTAGTTCTTGATGCAACCGGTTTTTCAAGA
TGTCTTGTTCAATACGACAAGCCATATAATCCAGGATACCAAGTAGCTTA
TGGAATAGTGGCAGAAGTAGAAGAACATCCTTTTGATGTAAATAAGATGA
TTTTCATGGACTGGAGAGATTCCCATCTTAATGGCAATACAGAATTAAAA
GAAAGAAACAGTAAAATCCCTACGTTTCTTTATGCTATGCCTTTTTCATC
TGACAGAATATTTCTTGAAGAAACATCCCTTGTAGCTCGTCCAGGTTTAG
CCATGGGAGATATTCAGGAGAGAATGGTGGCTCGCCTAAGGCATTTGGGT
ATTAAAGTGAAGAGCATTGAAGAGGATGAGAGATGTGTGATCCCAATGGG
AGGGCCTCTGCCTGTACTCCCTCAGAGAGTAGTGGGAATTGGCGGTACAG
CTGGTATGGTGCATCCTTCCACTGGATATATGGTAGCAAGAACTCTAGCT
GCTGCACCAGTTGTTGCCAATGCAATAGTTCAGTACCTTGGTGGTTCTAA
GAAAGGCGCTTTGGGAAACGAATTGTCTGCAGAAGTCTGGAAAGATCTAT
GGCCAATAGAGAGAAGACGCCAGCGAGAATTCTTTTGCTTTGGTATGGAT
ATTTTGCTAAAACTCGATTTGCCTGGTACAAGAAGGTTTTTCAGTGCTTT
TTTTGACCTGGAACCTCGCTATTGGCATGGATTCTTGTCTTCTCGACTAT
TTCTTCCTGAACTATTCTTTTTCGGGCTTTCTCTTTTCTCAAATGCCTCC
AACACTTCTAGAATAGAGATCATGGCAAAAGGCACGGTTCCTTTGGTAAA
CATGGTAAACAATCTGATCAAAGATAGAGAATAGTCATTTTGTGATTTTG
ACTCATTGTGTTATAAATGTTTGTATGTTCTCTGATCATAAATCTAGTTC
AAAATGCTTGTGAAGTTACACC
Sequences:
>MK000039_LCYB ID=MK000039_LCYB; Name=MK000039 LCYB; organism=Daucus carota; type=genetic_marker
GGTTTGGATGATTTGATTTTGGATATCTTCACCCACAAATTATTTTTTAT
TTTTAGAAAGAAAATAAAAGAATTTGTTTCAAGTGAGTGCAGCTTACACC
TACTTGATTATATGAAAAATGAGATATGCTTGTATGTATCTCGTCTGTAT
CTACCTCCAATCCCTCTTGCTGCTAGATGGGTAAGTCTTTAATTCTTTAA
CCGTAGCTTTATTTACTTGTAATTCTCCAATATCTTCTGCAGTTATATGT
TTAGTACATGTTTTTATTTTGAACAATTTTTTATTAAGTCACTCTGAAAT
TTCCATTAATTATTGGTGAAAGTTAGCATAAAGGTTGAGAATTTGGGATA
TCTTGGAACCCAGATTTTGTTTTTGGAGATATATTTGGTAAATTAATAGA
ACCATACATGAAAGTGATGGATACTCTACTAAAGACTCATAACAAGCTTG
AGTTTTTCAATCCAATTCATGGGTTTCCTGATAAAGTTGGAACCCTGAGT
TGTTTGAAGTTTCGAAACCAGGAGCTGAGGTTTGGCTCTAGAAGATCGAA
TGTAAATTGGGGGAAGAACGGTTCTGTAAAGGCTAGTAGTAGTGCCCTTT
TGGAGCTTGTTCAAGAAACCAAGAAAGAAAATCTTGAATTTGACCTTCCT
TTGTATGACCCGTCGAATGGCCTTGTAGTGGACTTGGCTGTAGTTGGTGG
AGGTCCTGCAGGGTTAGCGGTAGCACAACAAGTTTCTGAGGCAGGACTTG
CGGTTGTGTCTATAGACCCTTCTCCAAAATTGATATGGCCAAACAATTAT
GGTGTTTGGGTGGATGAGTTTGAGGCTATGGATTTGCTAGATTGCCTTGA
CACTACCTGGTCAAGTGCAATTGTTTACATTGATGACCAGACAACCAAAG
AGCTCGGAAGACCGTATGGAAGGGTTAACAGGAAGCAGCTTAAATCTAAA
ATGATGCAGAAGTGCATATCAAATGGAGTTAAATTTCATCAGGCTAAGGT
TGTAAAAGTTGTACACGAGGAAGCTAAATCCCTATTGATATGTGATGATG
GTGTGACCATTCAAGCTGCTGTAGTTCTTGATGCAACCGGTTTTTCAAGA
TGTCTTGTTCAATACGACAAGCCATATAATCCAGGATACCAAGTAGCTTA
TGGAATAGTGGCAGAAGTAGAAGAACATCCTTTTGATGTAAATAAGATGA
TTTTCATGGACTGGAGAGATTCCCATCTTAATGGCAATACAGAATTAAAA
GAAAGAAACAGTAAAATCCCTACGTTTCTTTATGCTATGCCTTTTTCATC
TGACAGAATATTTCTTGAAGAAACATCCCTTGTAGCTCGTCCAGGTTTAG
CCATGGGAGATATTCAGGAGAGAATGGTGGCTCGCCTAAGGCATTTGGGT
ATTAAAGTGAAGAGCATTGAAGAGGATGAGAGATGTGTGATCCCAATGGG
AGGGCCTCTGCCTGTACTCCCTCAGAGAGTAGTGGGAATTGGCGGTACAG
CTGGTATGGTGCATCCTTCCACTGGATATATGGTAGCAAGAACTCTAGCT
GCTGCACCAGTTGTTGCCAATGCAATAGTTCAGTACCTTGGTGGTTCTAA
GAAAGGCGCTTTGGGAAACGAATTGTCTGCAGAAGTCTGGAAAGATCTAT
GGCCAATAGAGAGAAGACGCCAGCGAGAATTCTTTTGCTTTGGTATGGAT
ATTTTGCTAAAACTCGATTTGCCTGGTACAAGAAGGTTTTTCAGTGCTTT
TTTTGACCTGGAACCTCGCTATTGGCATGGATTCTTGTCTTCTCGACTAT
TTCTTCCTGAACTATTCTTTTTCGGGCTTTCTCTTTTCTCAAATGCCTCC
AACACTTCTAGAATAGAGATCATGGCAAAAGGCACGGTTCCTTTGGTAAA
CATGGTAAACAATCTGATCAAAGATAGAGAATAGTCATTTTGTGATTTTG
ACTCATTGTGTTATAAATGTTTGTATGTTCTCTGATCATAAATCTAGTTC
AAAATGCTTGTGAAGTTACACC
This is the primary representative sequence for this feature.
Sequence Length:
2022