MK001031 GSSR-032

Resource Type: 
Genetic Marker
Name: 
MK001031 GSSR-032
Identifier: 
MK001031_GSSR_032
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  2. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
  3. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 4 relationships.
Relationships
The genetic_marker, MK001031 GSSR-032, is adjacent to primer, GSSR-32-F.
The genetic_marker, MK001031 GSSR-032, is adjacent to primer, GSSR-32-R.
The genetic_marker, MK001031 GSSR-032, is located in gene, LOC108202588.
The marker_locus, GSSR-032, is an instance of genetic_marker, MK001031 GSSR-032.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 J.Parsons Th. HM3Chr12.671GSSR-032MapViewer
2011 B493×QAL QALLG010GSSR-032MapViewer
2015 HM3Chr12.671GSSR-032MapViewer
2011 B493×QAL B493LG0125.6GSSR-032MapViewer
Synonyms: 
  • MK001031
Sequence Coordinates: 
DCARv2_Chr1:3673213..3673486+
View location in JBrowse: 
DCARv2_Chr1:3673213..3673486+
Sequence: 
ACTACAAACTACAGACACAGTAACTAAGATAAACAAGATCCAAGTAGCTG
AGCCCTAATTAATGAAGTCGAGACCTAAGTCAAACACTAATTAACAAATT
AACGGCAGATTCGAGTTGAATTAGGCGAAACACGTATCCGAGATTCGCGA
ATCTAGAGTGTGATTAGTAGTAATTAGCAATGCAGGTGAAAATCGAACAG
TGAATCTGACCTAGACATGAAAAGTAACAGTTTCGGAGAGAGAGAGAGGG
GGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTT
GAGAGAGAGGAGATATGTGTCACAGGGAGGCTATGGTAGAATAGATAGAG
GGAGAGAGGGTGTAGTGGTGTGTGTATGTATAAATCGGGGGTTTGTTT
Sequences: 
>MK001031_GSSR_032 ID=MK001031_GSSR_032; Name=MK001031 GSSR-032; organism=Daucus carota; type=genetic_marker
ACTACAAACTACAGACACAGTAACTAAGATAAACAAGATCCAAGTAGCTG
AGCCCTAATTAATGAAGTCGAGACCTAAGTCAAACACTAATTAACAAATT
AACGGCAGATTCGAGTTGAATTAGGCGAAACACGTATCCGAGATTCGCGA
ATCTAGAGTGTGATTAGTAGTAATTAGCAATGCAGGTGAAAATCGAACAG
TGAATCTGACCTAGACATGAAAAGTAACAGTTTCGGAGAGAGAGAGAGGG
GGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTT
GAGAGAGAGGAGATATGTGTCACAGGGAGGCTATGGTAGAATAGATAGAG
GGAGAGAGGGTGTAGTGGTGTGTGTATGTATAAATCGGGGGTTTGTTT
This is the primary representative sequence for this feature.
Sequence Length: 
398