MK001006 GSSR-007

Resource Type: 
Genetic Marker
Name: 
MK001006 GSSR-007
Identifier: 
MK001006_GSSR_007
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
  2. Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 2013; 126(7):1689-1702.
  3. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK001006 GSSR-007, is adjacent to primer, GSSR-7-F.
The genetic_marker, MK001006 GSSR-007, is adjacent to primer, GSSR-7-R.
The genetic_marker, MK001006 GSSR-007, is located in gene, DCAR_014610.
The genetic_marker, MK001006 GSSR-007, is located in gene, LOC108218667.
The marker_locus, GSSR-007, is an instance of genetic_marker, MK001006 GSSR-007.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2011 B493×QAL B493LG0460GSSR-007MapViewer
2011 SS1061QTL1061QTL-531.24GSSR-007MapViewer
2011 B493×QAL QALLG0466GSSR-007MapViewer
2011 SS10611061-424.148GSSR-007MapViewer
2013 10117 BLG0486.6GSSR-007MapViewer
2013 10117 ALG0464.1GSSR-007MapViewer
Synonyms: 
  • MK001006
Sequence Coordinates: 
DCARv2_Chr4:20489514..20489665+
View location in JBrowse: 
DCARv2_Chr4:20489514..20489665+
Sequence: 
ACTCAAAAGTGTCATACATTCAATTAATCTGACTTGCTTATATTCTTATA
TTTCAGTTTTGGATTAATATTGCATCATTTTTAATTGCAGGACCCCTGAT
AGAATCTCGAGGCAGAAGTCTCCCAAGTAATTTCTCAATTTGAATAATAT
TTGTTCGTATTGCAGAATCATGTTTAGGAGTGATTTTAAACTAAAATGCT
TGTTTCTAGGGATAATTAAGTAAAATGTTCTGTTTTCCTCTTTGTGGTGA
TAGTGATGATTCATGTTTTTCTGTGTGTGTGTGTGTGTGTGTGTGTTTAA
GATGGTCAGCTAGGGCAGTAAAGTCGTATGCAATGGCTGAATTGGAAGCT
AGAAAGCTTAAGTATCCTAATATTGGGACTGAAGC
Sequences: 
>MK001006_GSSR_007 ID=MK001006_GSSR_007; Name=MK001006 GSSR-007; organism=Daucus carota; type=genetic_marker
ACTCAAAAGTGTCATACATTCAATTAATCTGACTTGCTTATATTCTTATA
TTTCAGTTTTGGATTAATATTGCATCATTTTTAATTGCAGGACCCCTGAT
AGAATCTCGAGGCAGAAGTCTCCCAAGTAATTTCTCAATTTGAATAATAT
TTGTTCGTATTGCAGAATCATGTTTAGGAGTGATTTTAAACTAAAATGCT
TGTTTCTAGGGATAATTAAGTAAAATGTTCTGTTTTCCTCTTTGTGGTGA
TAGTGATGATTCATGTTTTTCTGTGTGTGTGTGTGTGTGTGTGTGTTTAA
GATGGTCAGCTAGGGCAGTAAAGTCGTATGCAATGGCTGAATTGGAAGCT
AGAAAGCTTAAGTATCCTAATATTGGGACTGAAGC
This is the primary representative sequence for this feature.
Sequence Length: 
385