MK001097 GSSR-098

Resource Type: 
Genetic Marker
Name: 
MK001097 GSSR-098
Identifier: 
MK001097_GSSR_098
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
  2. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  3. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
  4. Ali A, Matthews WC, Cavagnaro PF, Iorizzo M, Roberts PA, Simon PW. Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot.. The Journal of heredity. 2014; 105(2):288-91.
  5. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK001097 GSSR-098, is adjacent to primer, GSSR-98-F.
The genetic_marker, MK001097 GSSR-098, is adjacent to primer, GSSR-98-R.
The genetic_marker, MK001097 GSSR-098, is adjacent to gene, DCAR_028090.
The genetic_marker, MK001097 GSSR-098, is located in gene, LOC108199997.
The marker_locus, GSSR-098, is an instance of genetic_marker, MK001097 GSSR-098.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2011 SS10611061-39.176GSSR-098MapViewer
2015 HM3Chr30GSSR-098MapViewer
2011 SS1061QTL1061QTL-113.63GSSR-098MapViewer
2014 Mj-2LG0850.8GSSR-098MapViewer
2011 B493×QAL B493LG08100.3GSSR-098MapViewer
2014 J.Parsons Th. HM3Chr30GSSR-098MapViewer
Synonyms: 
  • MK001097
Sequence Coordinates: 
DCARv2_Chr8:15307022..15307393-
View location in JBrowse: 
DCARv2_Chr8:15307022..15307393-
Sequence: 
CATTCTCAGGTCACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
GTCTATCTCTGTGTGTGTGTGTGGGTGAAATATTAATATGTGTGTGTTGA
GAGAGAAAAAAAAATAGTGATAGGAGGATAATAAAAGAGAGAGAGCGTGT
GTGTGAGAAAAAAAAATAGTGCAATAAAAAATAAAAGAGTTAGAGATATT
GTGTGTGGTGGGGAAAAATTTTTGTGTGAAATTGTGGTGTGCAGTGTTTC
TGTGTGAGAAAACAGTGAGATATGTGTATATTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCCCCCCCCCCCC
TGATATTTTGTTTGTTGTGGTGGAATTTTTCCTCGTAATTTTGTTGTGCA
TTGCTTTTCCCTGTGATACCAGTCTGATAGCTGTTTAGTTTCATTGTATA
GAGTGACTTGATAAATGTGGTGAGTTTGGTATTAAGAATCGATGAAATGG
ATTTTGGGAAGTGTTATTTTGCTGAGCCCGATGTGATGACTTAGGATGAA
ACATAATGGAGTGAAGTCGGCCCCCCCCCCCCTTTGTCAAATTTATGTCT
CTATCTCGTACTTGATTGTAGTTTTACTGAAATGCATCCAGCATAACCAT
TTTGAAATTCTGATTATACGTTGTTCATACTCCCTTTTTAAAGATGTATT
TTTAATCGTCGGTTTTGGTCTGT
Sequences: 
>MK001097_GSSR_098 ID=MK001097_GSSR_098; Name=MK001097 GSSR-098; organism=Daucus carota; type=genetic_marker
CATTCTCAGGTCACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
GTCTATCTCTGTGTGTGTGTGTGGGTGAAATATTAATATGTGTGTGTTGA
GAGAGAAAAAAAAATAGTGATAGGAGGATAATAAAAGAGAGAGAGCGTGT
GTGTGAGAAAAAAAAATAGTGCAATAAAAAATAAAAGAGTTAGAGATATT
GTGTGTGGTGGGGAAAAATTTTTGTGTGAAATTGTGGTGTGCAGTGTTTC
TGTGTGAGAAAACAGTGAGATATGTGTATATTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCCCCCCCCCCCC
TGATATTTTGTTTGTTGTGGTGGAATTTTTCCTCGTAATTTTGTTGTGCA
TTGCTTTTCCCTGTGATACCAGTCTGATAGCTGTTTAGTTTCATTGTATA
GAGTGACTTGATAAATGTGGTGAGTTTGGTATTAAGAATCGATGAAATGG
ATTTTGGGAAGTGTTATTTTGCTGAGCCCGATGTGATGACTTAGGATGAA
ACATAATGGAGTGAAGTCGGCCCCCCCCCCCCTTTGTCAAATTTATGTCT
CTATCTCGTACTTGATTGTAGTTTTACTGAAATGCATCCAGCATAACCAT
TTTGAAATTCTGATTATACGTTGTTCATACTCCCTTTTTAAAGATGTATT
TTTAATCGTCGGTTTTGGTCTGT
This is the primary representative sequence for this feature.
Sequence Length: 
773