Resource Type:
Gene
Organism:
Name:
DCAR_028090
Identifier:
DCAR_028090.gene
Locus Tag:
DCAR_028090
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_028090, is a part of gene, DCAR_028090. |
| The genetic_marker, MK001097 GSSR-098, is adjacent to gene, DCAR_028090. |
| The genetic_marker, MK001048 GSSR-049, is adjacent to gene, DCAR_028090. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_028090 | DCAR_028090.mRNA | mRNA | DCARv2_Chr8:15297374..15306752 |
Sequence:
ATATTGTTATGAGGCTATTAGATTTGATGGATCAGGGGTTTGTGTTAAAA
GATTATTGCCTTCTAAAATATAACAGTTCTTGATATTTTGTTTGTTGTGG
TGGAATTTTTCCTTGTAATTTTGTTGTGCATTGCTTTTCCCTGTGATAAC
AGTCTGATAGCTGTTTAGTTTCATTGCATAGAGTGACTTGATAAATGTGG
TGAGTTTGGTATTAAGAATCGATGAAATGGATTTTGGGAAGTGTTATTTT
GCTGAGCCCGATGTGATGACTTAGGATGAAACATAATGGAGTGAAGTTGG
AGAATTTGGTGTTTGTCAAATTTATGTCTCTATCTCGTACTTGATTGTAG
TTTTACTGAAATGCATCCAGCATAAACATTTTGAAATTCTGATTATACGT
TGTTCATACTGCCTTTTTAAAGATGTATTTTTAATCGTCGGTTTTGGTCT
GTACATGGGTGTTTCCGATTATTAGATCTTTGCCACCTCTAGCCAAAAAG
TATGTGCTGCAGATGTTGTACATTATTGAGCCTATAGTCACTACATCAAT
GGAAGCGTGGGTGGCTGCTGAAGGAATGTCAAAGCATAGAGTCGCCATTG
ACAAATTAGTTCAGTTGAGACTATTTACTGAAACTGTTGACAGGTATGTT
TCTCACTTTACCATGTTGGTTATAATAATGGTATTGTTTATTGAACATCT
GCTTAAGTAAACAGATAAGCATGAGGTGAAATCTTGAATTAGACTAGATA
ATGATAAACAAAATATTTATGTTCCTATGTTCTTTAAATATGCGTGAGCA
CCTTTCCCATTTTTTTAAGTTACAGCTTAAAGTATCTTCAAGGCCATCCT
TGTTACTACAATGGAAAATTCCTTTTTTTTTTTATAGGTTTTACAGCTCT
TACCCTTTAGTAATTTAAAATTTATATCTAAGCTTTGAATTCTCTGATGG
CAGTTGTATTGTATAGCGTTCTCGTTGGAGGTCAATTTGGGGTATGGTTG
TGAAATTTTGGATGTGATGTAGCTTACTTCTTTTCCTGTTTATATTAGCA
GGAAAAGGGAAACCACGTACAGACTGAATCCAACATTTCAGAAAAACCTT
CAGAATCATATATTACATGGGTAAACTAAAGTCTATATTGCTAACATGTA
CATGTTTGATGAATATTATGTTTTCTCCTTTGATTTGCACCAAACAGGAT
TTAACTGTAGAAGAACACACCTTTATAAGAATGTTAATGTTACTTGCCAG
GTATTGGTCATATTAATATGAGATACCGGATTCAAGTATATATAAAAAAT
TTAGGTTGGTGTACATTGTTCACCATGCACAAGGACAGAGATTGTTTAGT
TAAAATCCAAAGCTGTTAATTAGGTGGTTTTGGTGGACAAGAAACTGCAT
GGAAGATACGTGTATAAAAAGCTCCAGGATGAACATATATTCGAGTATTA
AGTCCATCATATAAGCCTATGACATGTAGAAAGCACCCTGAATGTTTTAG
TGGGCAAAATGAAAATGAGAGTTATTTTGTAAGACCACATATAGGCAACC
ATGCGGATTTGTTAAAATATATCTGGTTCACAATGTGAGTGTACTGACTT
CTGTATGTGTGTGTCTGTATGTCTATTACATGTATAACCTATAGAATCGA
TATTGCAGAGGGGTTTTACCAAGGGAACCTATGAAAATAAATGTGAGGCT
TCCAAGCTCAGCTGATTTAGATGCCTATGCCTCTGGACAGTGGGAGGTGA
TAGCCTTTTCTTTGCATTAATTTTCCCGTTCCAGTTATAATTAATGTAAT
TAGTTTCAGCCTAATAATTTAAGAGTTTTCAAGCAGTTTATTGCTTGCTT
TCCACACTATGTCTCGCTATGTTGTGGCTTCTTTATAATTTTAACTTTGT
TACATCAGAGCTTTCTGTTGCACCTTATAAGCTCCACAGAAGCTGAAGCA
ACAAGAAACATCAGCTCCTCTATGATGAAAATTTTCCAGAGAGGCCTTCT
AAGTCAAAGGTTTTTAAATGCACATGTTTCAATTCCGTGATTTCTATCTA
TTCATCTTGGTCATTTTTCTTTTAACGTTGTATAACATGAGGAGTTGATA
ACTTATCTGTGGTTTGGTGTTTCTTTCTTAGAGACAGGGAAGCTCCTATG
TTAACAGAGAGTGGTTTTCAGTTCTTGGTATGGCACTGTTACTCTTACTC
CTTATTTTGTAAACATTGTTCTACTGGAACATATGTTAATGTTCATGTGT
GACAGCTTATGGATACAAATGCACAACTTTGGTATGTCATCAGGGAGTAT
ATTACTCATTGTGAGGTATGGCTTACAGTTCCTTCTCCCCACTGCCTTTT
AGTCTTTTGATATGATCTTAGTGTAGTGGCATTGCTGAACTATTAGGGCT
TGATATATATGTGGAGTTACCTTGGGACCCTCTTTCTTCTTTGTAAAACT
ATATTTCTCCCAGTATAGGTATGATCATCCCCTGATGTATGAAATTCTAA
TCATTGAGTTATATGACCTAATACATGATATGGGTTGCCACCTGCATAGT
AATCAACTTGAATCACCTGATAGTTGGTATATTACTCGGGGGCTGTTGTC
CTTGTTCCTCAGTTGCAGTAAATTTTCAATTTTTAGATAGGAAATTATGT
TTTACACTATTTAGAGGATATATATTGCAATTCAAAACCCTCTTTTTTTA
ATGGTTATCAGAACTCGGAGACGGAAAGTGAATGGACTCATAATACAAAG
ATGTATAGAGTATTCCTCTGATATAAAAATGGATTAGAGTATCTAAATTT
CCTGATATATAGTAATGGAGATCCTTTTTCATGCAGGAGCGAGGTGTTGA
TACGTCAGATCTTATCTCATTTCTACTGGAGCTCAGTTTCCATGTTTCTG
GTGAGGTATCACTTCTCCATATGTATCCTTTGTCATGCTGCATATAAGTT
AGTATTATATATGTTTATTCAGTTTACTTGTACGAATATTTGACGTATTA
GAATAATCAGAGATAAATAACTTTGTGTGAAACTAATGCTAAATTGTTGA
AGCTTCAAAACTATTTATTAAGGTTACTCCAGAGGTTTTTATACCTAATC
GTATGTTATAATTATTTTCTTTACATGTAGGCTTATAATATGAACACTTT
GAGTCACAGTCAGGGATCCATAGTTAAGGACCTTGCAGACCTAGGGTTGG
TCAAGCTTCAGCAGGTGAATGCTACTACTTCCTGTTTCTTATGTGATACA
TATGCTTATTAACATCCCACTATTTGTCTGTATACTTCTAAGAATTTAGT
ATGTATTCTGTTCACAAGGGTATGAAAGAGAGTTGGTTCATTCCTACGAA
ATTGGCTATCAATCTTTCAATTAGTCTATCCGATGCATCGTCCAGAAAAC
AGGTATATTTTTCTAATTCTGTGTTCATAAATAGCTTGAAGATAAAGGAA
AATTATTATGATTTAAGTAGTTGACACAGGAAATTAGAGACTGACCTAAA
GAATGAACCATGATAATGGATGTAACCCTTCAAAAATGTAATAAGAGTGG
TTGAGTTATGGATACTCCTTTCATAGGATCTGTAACAGGATGTGTTTTCT
AATAAATCTGAAAAGTTGTTATATGAAATTTTCTCAAACTTAATTGTTTC
TGATAAACTCTTAATTGTTTGTTTTAAAGTGCTTCAGTAATGTCAATACA
AAGTGTGCTGTTTAGGTGCAGCTATTATGTTAAATACTAAAATTACTGAT
GTATAAAGGAATGAACTGCTGGATATGTTTTGGGTCAATTTGCCATTATA
GAAATGATGTTGGACCCCCCCAAAAAAATGAAGATAGACATAGCCTCTCT
GGTCATATGGATGTTTGGGTCAAATGAGATGTATCTATTGGACATTCTAA
TAAAAAATTTAAATAAGAATTAGGTAAAATATCGATTCATTAGCTCAATA
CAGTTCCATGGTGGTTAGTATGTGTTTGGAGGCAGGCCCTTAGAGCATGG
AAATATGTGCTTCTACCATTGCTGCCTGTAACATGTGATATGTAGGACAT
CAAAGTGACTGCTTTTCTCATCAACTCAAAATCAGTGACTTTAATAGCTA
TTTATACTAGAGTTGGTATTTATTCAAGTGTAGGGGGATAGTTGCGAATC
AAACCCTAGAACTCTTCTAGCACTAGACTACTAGAGCACCCTTATTACTT
CTCGGCCACTCCATGATTCTTGACTTGGCTAATATTTCCAATTATTCTAT
TCATGTTGTATAGGTATCCATAACCATTTCTTTTATATCTGCAGGGCTAT
GTTGTTGTGGAGACAAACTTTAGGCTTTATGCATATACAACATCTAAGTT
GCACTGTGAGATTTTACGCCTATTTGCAAGGTAATCCCGTGTGTTCATTA
TCCTTTTTGGTTTATGAGTGAGTATTTACTTAAACAACTTAAACTATATA
TGATTGTGCAAATATTACTTGAATTTTGATGATTGTTTCTAAATTTCACT
TGATAAATTCTTTAGCAGATGTTTCTGTGTGTAGTTATTTACTATTATTA
CGTGTTTCCAGATCTGTATAACAATGCTCTCTGTACAGAAAACTGTCAGC
TTTTAGATATGAGCCAAAATAGTAGTAAGCTGGTGTCTGATGGAACTGAA
AGAATTTCTTTGGTGATCAAGGACCTATGTATAAAGCTAGTGCTGAACAA
AAAGGTCATCTGATAAATAATCTATATGTAATAGCTGATTTGCTGCAGAA
TTGCTATTTCGACACACTTAGCTATTTTAAACAGAATTAATTATAAGGGG
ATAGCCTAGTGGTACGGGCTTATATCCTGTAGTCCTAGTTAGAACAGATA
CTAATTTGTAGGGCAATTAAAGCATCATTGTTCCAAAAAAGTAAACTGTT
ATAGGATATCATGTTTTCCCAATATAATCACACAAATTTTTATTAAACCG
CATATATAGATATAATGTTTCATGTTAGCTAAGTTCTCTTTCTTTGTAGA
TATCACTTACTACTATAGTTAGAAATAGTAATTAAACTACGTCTTCAGGA
ATCTTCGGAGATAGTTAATAAACTAGTACTGTTCCATCAAAATTCTAGTA
TGTGCCACCAAAAAAAGCATGTTTTAGCTGGGGTTGGCTATAAGCCATTA
AGAGATATAATGTTTGCAAGTATTCCTTGAAATAAAAAACTAAAGGATAA
GATGTACTTTGATAAGATGAAAGTCTAAACTTGATTTTTGTGGTTCAGTT
GAAGTTAAACTCCACCTGAATCTTCTGACCCAAATTTTGTAAAGAACCTG
TTACCTTTCAGTTCACTTAATGACTTAACTTTTTATTTGCTTAGACTCAA
TTAGGTGGAGAAACATATACTGTTTCAGTTCACATAACACTTAACTTTCT
ATGGTATTATATAACTTCCTATGGTATTATGATTATATGTTTAACTGGCA
GTGATTCTTGATATTAATGCCAATTTCTTAGCTTCAGTAAAAATATTTTG
TACTGACTATTGCATCAATAGATAATACTACCATTGAGTGAGCTGTTTGC
TTTATAAGAAATCCATATATGAATATATTGTTGTGTTAAAATTGCAGGAT
AGAATATCAGCTGCCAAATCTCATTGTTGGAGCAATTACAAAAGAAAATC
TCTATAAGGCTTTTCAAAATGGCATCACCTCAGATCAGGCAAGTATTCAT
AATTTCATATTATTATACATCATCTCTGTGACCTTTTAGTATACGCCACT
CAGTAATAAGAATTTCATTACATTATTATATTTCGTTTACCAAAAGGTAT
CCACTTCCAGTTGATGACAATATCAGATTATACTATGCCTGGAGATTAAT
GTCACCATCTTCTTATGCAGTCAGTTGTTACCTGAAATTTATACACTATG
ATCTTTAGATTAACATGGAATTATGCTATATTGCTATATATGTACATATT
TGACGACTAAACTCTTGAGGGGCTGGAGTTTATACAGAATGTTCTAGCAT
CTAATATAGTGTCTAACTAGCAACATGTACAGCAAGTGGCTATCTCATGT
CCATACTGTTCAGCAGTCCTGTCTTACATGCTAGGTATTATATTAATTTT
CCTGATAAATCTTCGCAAGTCATCAACTTATTGCTTCTAAGTTGGGTGTG
GGTGTGTTGAGCAAATACCCAGTGTTTAGTTACCAAATACATGTGATTGA
TACAAACTTTGTTAGGCTTTTCCAAGTTCCACAGTCTTGGGGTAGCCTAC
CTAACTGACAGCCAGCAACTGATTTCTTTGAAAGTTTACACAAACAAAAT
CCGTGCATCACAAAAAACCTGATATCTATTTGGAGAATTTAGGACAGCAT
GCAGGAGATACTCATTGTGGATATATTGATAAAAGCATAGGTAATGTGCT
ATTGCTGCACAGCCTGATTGCACTCTTCTGCTCTGATTCTCTTAAGGAAG
TTTTTGGTGTGCGTACTGATGGATTATCTCTGATAGTGCATAATCCTCAG
TGTTTACATGCTAGCTTGTTTATCAGATGATGATATACTCTTGTATCTGC
TTGATCATCTCTATGGAGCACATTTAAGTAGTATGCCTTCGGATTTGCAC
AGATTATTTGCTTTCTCCAGCAGAATGCACATCCTCGAGTCGCTGAAAAA
GTGCCTTCTGTACCAGAGAATGTAACCGATCAGGTTTTTCTTCTTTTTCC
ATTCTTCCACAGGGATCTTATAACCTCTTAGCTGCATGTCTTTCAAGATT
GTTTGCTGCATTCGGGGATTTAAGTTCCAATGAACTTAGATTACACATGG
TTAATGTTTAGTATTTTTTACCGTATCTCATCTTCATAGTGTTTGTTAGC
AGCCTACCTGTATGAAAAATAAAAATGAACAAAACGTAATAGTCTAATTG
ATTAAGTGGGCATTTCTGACATCTATTATTTTTTGACAGATAAGGTTGTG
GGAATCAGATTTGAATAGGGTTGAAATGACACCTTCTCATTTGTATGACG
AGTTTCCTTCCAGGGTAAGAACCAATTTCAGACGCTGTTGCAATGTTTTC
GAGATATAAATATATATAAGCTAGTCTCTATGTTTTTTTTTCAGGATGCC
TTTGAGGCTGCCTGTGATTTTGCACGGGAGTATGGTGGGTTGCTATGGGA
AGATTCAGTAAAGATGCGTGTAATTGTGAAGGCTGAAACTTACGATCACA
TGAAAAGATTTCTTCGTCAAAAGTAATAGCTAGTTTCTTGTACCTAACAT
TACACTGCTAATGTTATTCAATCAATTTTGTTTTGAGAATTGTAAATTAT
ATAGTAAGATGTCCCAGATGCATATATATCCATTAATTCATGCTACACCC
AAAAAATATAGTATGCTGCGGATCATTTGAGGAATACCACCTTATTTGGA
ATTCTAAATCACTCTTTCTCCATTGTGTTCAGAGATAAAAATCCCCAGCA
AAATACGGAATAGGTTGGGCTTGTGTTCATTATGTCTTCTGTTTTCACGT
GTTTACTCTAGCATGAATTGCAGCAGTGCTTATACTTTGTTCAGTTGAGG
CTTGCACAAAACGTTTGTGATTTTTAAACAAACCAAGAAACCAGTAATGT
TTAAAGATAGCTGACTTTGAGCAGCTTTTTTTTGCCAGCTAATGCTCAGT
TATAAGCAAAGCAAAATTCTAGTTTTAAAGTTCAACAAAACAAGTATTGG
TTTATTTTCAGATGGAGTTTGGCCAGGGGGATAGGAAATGGATTGTTACT
ATGATGGAAGCCGAAAAAAGGTCCTACCGGGAGTCGAACCCAGGTCGCTG
GATTCAAAGTCCAGAGTGCTAACCACTACACCATAGAACCAATTGTGCAA
ATTTTAAATTTGTAGCTAACAGGACGTAAATCAGTCTAAAGTATCACACT
TAAACCCAACTTGCATGACAGAAGATTAGGGTTGATGGCACAGCGGCACC
GGCATGCCAAGCGGCATGCCTTTTATTCATTTGGCATGCCATTTTACTAA
TTTTTTATATTATTTTTATATTATAAATAATAAAATTTATATAAATATTA
TATTTTATAAATATTTAAAATTTTAAATATAGTCCAACTTTACAGTTAAA
TTACCGCATCATAATTATATGCTTAAGGCCCAAATTCTAGGAATCTAGGT
CCAATAACTATCAGTCCAATAACAAATTAAAAAGTATGAATTTAATCTTT
ATTGGAGTGTTGAAACTCTTTTTAGTGAAAATATTAGATAAACTACTAAT
ATAAGTTAGCACTGTACTAAATTCTGTTGTTAATATTTACAAACTTTTGT
TATATTTGTAAGTGCACTTTAGTATCAATCTTGTAATGATGTAACGGTTT
TTGCTATATTTAATAGAAAATGGCATGCCATTTGGGCATGCCTTTTTGTA
ATATACATGCCTATAGGCATGCCCGTGAAAACACCCGTGACATGTACCCT
ACAGAAGATGCACCTCGCTACTCTATTAAGTGGGAACAAGCTGGAGAGGG
AAATTTATATGAATGAATGAAAACAGCAACTTTGTTTTTGTCAACTTGAA
GATCTTCTCTTGGACAACAACATGCATTCTTTGTTCAGACCCAACTCTTG
CTTTGGTTCTAGTGTTCAAGCTGAATTAATGGAGGCATATATAAAGCAGA
GATTCTCTTTCGGCAGCTCCTTCACCAGCTGCCTAAGTTCTCCTATATAT
TCCATCCACGGTGGGCCTTTTCAAGAGATATTCTGAGGCAAGAGAGCCTC
AAACAAAGCCTTCAGATTAAGAAGAAATAATTTTTTTTACGCGTGTTTTA
GGATTCTCATCACACATATTTCCCATTTATCAGATCAACTCTAAATTGAT
CTACTGGCAATAAAGATTTTCCTTTGGCCCATTGGAACGACTACCAAGAG
ATGCATAAATCATAATCACATGTACATGAAACATGAGACCCAAGACTGTT
CCGTTGTCTCCATTTATTTCCTGATAAATTTCATTACCATATAAAGTTTT
ACCAGTCTTACAAAGGATCATAATGCAGGTGTTATACTAACATACTAAAT
TGGAGACAGAGCAGTCCAGCTCCAGACCCCAGTTTGCTACGGCTCTTGCA
AACACTGTTGCTAAGTCCTACCATGCTGCCATCAATGTAGGATAAGAAGT
CTATGCTTTAAAGGGCCTCAATTACCATCAACATCAGGGCGTTAAAATTC
CAACTTCCGACAGCTAAGGCTGTCCCTTCCCTTACTGGCATTCGGTTCTT
TCTATGATCACATATAGATCAGAGTAATAAATATTTTACGCTAAAATTAT
TTCAATAACCAAATATTTTCTAGCCAGTTAAGTCGTTCAACAGCCTCGAG
CCTGGGAGCAGAAATACCATCAGTTATTGTTTCATCAGGGTATCTACTGT
ATTATCAGTAGCAGACTATATTATAAATAAATTACTCAGAAAAAAACAAC
TTGTGCAACAAGGTAACATTAGCATGTGAACACCCATAATATGTCCACTA
ATCTACAACGTACTCTTGTTTGACATACGAGCCAGTTTACTATTTTTGTG
TAAGAAACTTGCTCTCACAGTCGTTGAAACTTGATATGTGAAACTAATTA
ATCAGCAGGGCCTTTAGAAGGCTAGAGTTGCAATGGCCAATGGCCCATGT
ACTACAGCAGATTAAGACAACTGGGACCTGGGAATTAATTTTTGTGTTCT
AATCTATTGTGATTAGTGTCCTAATTTCTGTGCCACCTAACCGTACCCTT
TTCTTTTTAAGCGACTCATTCTCCCCCCTTCAACCTCCAGTGCATTTGAC
TTGTTCAAAAGACCGCGACAAAGGGAAATTACAGAAGAAGAACAGGAACC
AGTAGAATTACTGATGATGAGCTTAAGGAACTTGTTCTGAAATTACAAGC
ACAGATACCAGAGTCTAGTTCAAGGTGCACTGCAAGGGTAAGTTCCTCTA
TCTGCAATTCTGTTCAATGTCAAATTCTTCTGTTTTCTTCTGCTAATTAC
TGTCTTTAAACCTGATATTTATCATTGAATATGCATGACAATTGCTAGAA
AAATGATCACATATCTCCTAGGAAATCAATTTCGGTATTGTTAAATGTAG
CAATCTCTTACTATTGACGATATATAAAACAGCTAATAATCGTACTGAAT
ATTTGAAATATAAGGCTTAAAGCTAGTAACAAATTTAAAATTAGCATTTT
CACGTTATTAACAGAAGTTAAGTACGGTCTTACAGAGCAAATGCCTGCAG
TGGATGAAATTCATGTATATCGAAATTGATATATCCAAGTACATGCAATG
TATATGACCAGGTATCGTCATCAAAGATTCTCAAAGAGACATGCAACTAC
ATCAAGAAGTTGCATAAAGAGGTGGACGATCTTCCTTCTTTATGCAGATA
CTTTTTGTATAATGATCTCCCCTGGTTTTGTTTTGTTGGAATAGTAATAG
ACAAACATGTTGGAAAAATGTAAGTTTTTCCCACATTGTTATGTCGATTT
CGAATCACATATTTAAGTAACGATTGTTGTGTGCGCACAACGAGTGACGC
TTAGAGCGCGTTGTCCTACGGGAGATCTTTCCAAGGCACTTTGAATCACT
TAAAATGACTAAGAGATGAATGAGATAATAGTTTCTAAAGTTGGTCCCCT
AAAAGTGGAAAAATAAGGAATGTGTTAGAAGTCTCACATTAATATTGCAA
AGTAGAATAGTTGGGTTTATATGGCAAAACACTTATGGAGTGTAAATCAT
GTTCTTCCGAGGCCTCGCAAGGCTTCGGGCTTTCCGCGTGTGCGACCTGA
CGGACATGAATGTAGTAAAATTTAGATAATCATGGACACGAATGCAGTAA
AATCTGGATAATCACGGACTAGTTTTGCTGAATTTTATATTCTATTGGGC
TTGGTAAATTGACTTATCGAAAAACACACAGCCGCACATCATAATATAAT
TTATTTGAAGAGATATGTACATAGTACATACTGTAATCCTTCAACTGTTG
TTTTGAGCAATTGACCATAGATGCATCCCTTAAATCATAAATCTTGAATC
CATTTTCAAAGCCATTTTACACCCCCTATCCCCAATCTTCATATCTATTT
ACAAATAATGCCATCCAAATTTGCTAAAACTGAATACAATGTTAACCACA
CAATCTTACAACCCATGTGCACTTTCTATTTCCGGCTTTGGGTAATATTT
TGGGTAGTCACGTGCTGCTGAGTATCATTTCCATCTCTTTGCTGTGAATG
ACTTTGGCAACCAGACAAATAGCGAATTCAGTCAAAAATACCACTCAGAA
CTCTGATTCTTTCCTCTTCTATACTTCTTGCCAGTGTAGACTCGATTTTG
ACTATGATTTTCAATTTGGGTCATACAAATTTGCTCTGCCATGTTTTTGT
TTGGAGGGCATACAAAAATTGCAGAAGCTGTCAAATTGAAAGGAGGTGTT
TTTGTTTCCTCATCTGTTCAGCTTTGCAGCTGGGTTTCACTACCAATTCG
AATTTCAAATTACATTTCAAAATACATTCTGGGTTCAATTTCAGAGCAAA
ACCAGAAGAGCAGTTCATCCATCTCAGCTATCCATGAAAGAGGTACAAAA
ATCAGCTCCTCACTTTTTGGTTTTTTGATTATCTTTTATTTTGCAGGAAC
CACTATATTCGATTTTGATTTTGATTAATAATCTTTTATTTTACAGGCTA
ATTATAATCATCTTAAACTTGACAATTTTCCAACCTTAAACAGTGAAGGT
TCTGGTGATTTCACGGCCCTCTTCTCAATTAAGTAGGTCAGATTATGTTA
TTGTTTAAAGTCCTGACGATGTGTTTGATACAATGCTTTTCAAATAGGTT
CTGCATTGAAAAGAAGTAGGCGGGTGTTTCGGAGCAATGCAGTAAATACT
AAGGGAGATGAAGGTGAGCATCTTAGTACCTATCTTAAATATATTTGTAA
ACAATGTTCTCGGGTAGATGTTCTAATTTAGTAGCCAATATTCTCATGTA
GATGTTCTAATTTAGTATGTGTAAAATTTAAGGTTGATGTTCTATAAGCA
GTAGACTATTATTCATTTCAGTGGCCTTCTGCATTTCAGTTTAAAATTAG
ACTATATATTAGTTTGGAACTGTTGAGCTGTTCTTCTGCATTCAAAATTG
ATGTTGTGCAATATTGTTTGAAGGTTCTGTACTGTGCTTTATTTCAGTTT
AAAATTAGACTATATATTAGTTTGGAACTGTTGAGCTGTTCTTCTGCATT
CAAAATTGATGTTGTGCAATATTGTTTGAAGGTTCTGTACTGTGCTTTAT
TTCAGTTTAAAATTAGACTATATATTAGTTTGGAACTGTTGAGCTGTTCT
TCTGCATTCAAAATTGATGTTGTGCAATATTGTTTGAAGGTTCTGTACTG
TGCTTTAATACACAAGCATCTCCCATTGATCGTCAACCACTGTCATCCTT
GACCAATCAGAGTTTAAGATCAAACGGTATGATTTCCAGTACAGAAATTA
TGTTTTTTGTGTTTAGTCAGAGTTTAAAATATAACAATATTACTCTTCTT
CCCAGCTCAAAACACTAATTTACAGCTTGGTAATATAAATGGAATCCGTG
GGAAATCAGCTTTCTCGGAAGTGTGGAAAACACCTCCAACAGGTATATTG
CCCTCTGAAATTAGTTTATATGAACCCTTGACATGTTTTGGCAGCAATTG
TCGCTGACATAGGTTTTATATTGTGTATGCAAGGTTCTGTACTCAACATG
AGTGCACAATCATCTCCCAATGATCGTCAACCTATTTCAAATTTGACCTT
GCATAATTTAAGACCAAATGGTATGGTTTCCAGCGAAGAAATCATTTTTT
GTGTGTTTAGTCAATTCCATTTTCGCGACAATACAAATATACCAATATTA
CTCTCCTGATGGATTTTACATGATGTTTATATTTTTTACGCTTAAGGTAC
AATATTTATGGAGAATACAAAAGCATCTCCCAATGATCAACTGCCACTGT
CAATGTTGACCAATCAGAGTTTGAGAACAACAGGTATCAAGAGGAAATTT
GAAGACGGAATTTTTAGTGTTGACATATCAGAATTTCTGCATTACCTAAA
ATATAAACTAATAAGAAGAATTACTCTTTTTCCCAGCTGCCTACACTAAT
TCCAAGCTTGGTGGTCTAAATGGATTCCGTGGGAAATCAACTGTCTCGGA
TTCTTTAGTGTGGAAAACACCTCCAAGAGGTATACTGCCCTCTCAAATCA
GTTTATATGAAATGTTGACATGTTTTGGCAGCAATAGTCACTGACATTAG
TTTATATTGTGGCTGCAATGGACTGTTTATATATATATATATATTTGAAT
GGTTTTAAGGTTCAGTTTTCAACATCAATACACAAGCGTCTCCCAATTCT
CAAACTCCACTGTCAAATCTGACCAATCAGAATTTAATATCTGGTATGAC
TTCCACACTTTAAGCCATTTGTAATTAATAATAGAATATCCACATTTAAG
CAATATCATACAGATAACCATATAAGCTTCTGATATTGCAATTGACATTA
GCTGTAAATGTGCTCAGGCTCTGTATTCAACATGAATACACCATCATCGG
CCAAAATTCGACCTCCACTGTCCAATTTGACTAATCAGAGTTTAAGATAT
TCCGGTATGACTTTTAAATTTGATTTCAAGATTACTTAATTACATGTATT
TCAAGATTACTTAATTACATGTAATTAGAAATTTACAGCTAATACCAAAA
TTGTGATCGGTTTACCTGCAATGGACTGTTTACATTCTTTTTTTTTTTTG
GGTTTTAAGGTTCTGTTTTCAACGTCAATACACAAGTGTCTCCGAATTCT
CAAACTCCGCTCTCAAATTTGACAAATCAGATTTTAAGATCATCTGGTAT
GCCTTCCAGATTTCAATTGAGCTGTAATTATTATTTTTGAAATTAATAAT
TATAAGCAAATTTAAATGCAAACTATGTTTCTGTATTATTAGGTGAAGGT
ATCAACATCAAGGCACAAACTAATACAAATAACAGACCTTCTCTGTCCCA
GCTAACAAATAATCGTTCAAGATCATCTGGTATTTATGGCAAATCAAATT
CTAACAAATTTTTCAAATGAATGACTATTGTTTGTTGGTAACTGTTGTCT
ATTTCTTCAAATGTCCAGGGTTGAAGAAAACTGCACAAACTGCCATCAAC
AAGGACACAGCCCCCCTGTCTAACATGACAAATAAGAGGAAAAGATTAAA
TGGTATTTCTCCAAAAATTTACTC
Sequence Length:
14274
Sequence Checksum:
842b0f8ce81ec6f9a2cd2072d38ccba8
View location in JBrowse:
Cds:
>DCAR_028090cds ATGTTGTACATTATTGAGCCTATAGTCACTACATCAATGGAAGCGTGGGT GGCTGCTGAAGGAATGTCAAAGCATAGAGTCGCCATTGACAAATTAGTTC AGTTGAGACTATTTACTGAAACTGTTGACAGGAAAAGGGAAACCACGTAC AGACTGAATCCAACATTTCAGAAAAACCTTCAGAATCATATATTACATGG AGGGGTTTTACCAAGGGAACCTATGAAAATAAATGTGAGGCTTCCAAGCT CAGCTGATTTAGATGCCTATGCCTCTGGACAGTGGGAGAGCTTTCTGTTG CACCTTATAAGCTCCACAGAAGCTGAAGCAACAAGAAACATCAGCTCCTC TATGATGAAAATTTTCCAGAGAGGCCTTCTAAGTCAAAGAGACAGGGAAG CTCCTATGTTAACAGAGAGTGGTTTTCAGTTCTTGCTTATGGATACAAAT GCACAACTTTGGTATGTCATCAGGGAGTATATTACTCATTGTGAGGAGCG AGGTGTTGATACGTCAGATCTTATCTCATTTCTACTGGAGCTCAGTTTCC ATGTTTCTGGTGAGGCTTATAATATGAACACTTTGAGTCACAGTCAGGGA TCCATAGTTAAGGACCTTGCAGACCTAGGGTTGGTCAAGCTTCAGCAGGG TATGAAAGAGAGTTGGTTCATTCCTACGAAATTGGCTATCAATCTTTCAA TTAGTCTATCCGATGCATCGTCCAGAAAACAGGGCTATGTTGTTGTGGAG ACAAACTTTAGGCTTTATGCATATACAACATCTAAGTTGCACTGTGAGAT TTTACGCCTATTTGCAAGGATAGAATATCAGCTGCCAAATCTCATTGTTG GAGCAATTACAAAAGAAAATCTCTATAAGGCTTTTCAAAATGGCATCACC TCAGATCAGATTATTTGCTTTCTCCAGCAGAATGCACATCCTCGAGTCGC TGAAAAAGTGCCTTCTGTACCAGAGAATGTAACCGATCAGATAAGGTTGT GGGAATCAGATTTGAATAGGGTTGAAATGACACCTTCTCATTTGTATGAC GAGTTTCCTTCCAGGGATGCCTTTGAGGCTGCCTGTGATTTTGCACGGGA GTATGGTGGGTTGCTATGGGAAGATTCAGTAAAGATGCGTGTAATTGTGA AGGCTGAAACTTACGATCACATGAAAAGATTTCTTCGTCAAAATGCATTT GACTTGTTCAAAAGACCGCGACAAAGGGAAATTACAGAAGAAGAACAGGA ACCAGTAGAATTACTGATGATGAGCTTAAGGAACTTGTTCTGA
Pep:
>DCAR_028090pep MLYIIEPIVTTSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDRKRETTY RLNPTFQKNLQNHILHGGVLPREPMKINVRLPSSADLDAYASGQWESFLL HLISSTEAEATRNISSSMMKIFQRGLLSQRDREAPMLTESGFQFLLMDTN AQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEAYNMNTLSHSQG SIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVVE TNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGIT SDQIICFLQQNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYD EFPSRDAFEAACDFAREYGGLLWEDSVKMRVIVKAETYDHMKRFLRQNAF DLFKRPRQREITEEEQEPVELLMMSLRNLF*