Resource Type:
Genetic Marker
Name:
MK002705 K0149
Identifier:
MK002705_K0149
Organism:
Marker Type:
SNP
Publication:
- Bannoud F, Ellison S, Paolinelli M, Horejsi T, Senalik D, Fanzone M, Iorizzo M, Simon PW, Cavagnaro PF. Dissecting the genetic control of root and leaf tissue-specific anthocyanin pigmentation in carrot (Daucus carota L.).. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2019 Sep; 132(9):2485-2507.
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK002705 K0149, is adjacent to primer, K0149_X. |
| The genetic_marker, MK002705 K0149, is adjacent to primer, K0149_Y. |
| The genetic_marker, MK002705 K0149, is adjacent to primer, K0149_Common. |
| The genetic_marker, MK002705 K0149, is located in gene, DCAR_009854. |
| The genetic_marker, MK002705 K0149, is located in gene, LOC108210377. |
| The marker_locus, K0149, is an instance of genetic_marker, MK002705 K0149. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG full map | CH3 | 25.656 | K0149 | MapViewer |
| 2019 3242 | 3 | 34.909 | K0149 | MapViewer |
| 2016 70349 NG bin map | Chr3 | 59.099 | K0149 | MapViewer |
| 2019 3242r | 3 | 34.909 | K0149 | MapViewer |
| 2014 70349 | Chromosome_3 | 59.099 | K0149 | MapViewer |
| 2016 70349 NG full map | Chr3 | 59.099 | K0149 | MapViewer |
| 2016 Integ NG bin map | CH3 | 26.509 | K0149 | MapViewer |
Synonyms:
- MK002705
Sequence Coordinates:
DCARv2_Chr3:11691628..11691671-
View location in JBrowse:
Sequence:
CMAGGCTTTCTCGTACTAATGGAACCTCCAGCTCTGARTTGTTCAGTTCT
CAGTTGCGGCCGCTTCTGAAT
Sequences:
>MK002705_K0149 ID=MK002705_K0149; Name=MK002705 K0149; organism=Daucus carota; type=genetic_marker
CMAGGCTTTCTCGTACTAATGGAACCTCCAGCTCTGARTTGTTCAGTTCT
CAGTTGCGGCCGCTTCTGAAT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CMAGGCTTTCTCGTACTAATGGAACCTCCAGCTCTGA
Three Prime Flanking Region:
TTGTTCAGTTCTCAGTTGCGGCCGCTTCTGAAT
SNP:
A/G