NCBI Assembly ASM162521v1; Daucus carota cv. DH1; Chromosome level assembly

Resource Type:

Genome Assembly

Name:

Description:

This assembly represents the NCBI GenBank record for the Daucus carota DH1 Chromosome level assembly published in 2016. This is based on the same assembly as described in CarrotOmics record Carrot Genome Assembly DCARv2

File:


File	Type
NCBI FTP Download for GCA_001625215.1_ASM162521v1	NCBI Data Download FTP Link

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There is 1 relationship.
Relationships
The analysis, NCBI Assembly ASM162521v1; Daucus carota cv. DH1; Chromosome level assembly, is a part of analysis, Carrot Genome Assembly DCARv2.

Cross Reference:


CarrotOmics	bio_data/290811
Genbank Assembly	3272198
NCBI Assembly	GCF_001625215.1
NCBI WGS	LNRQ01
Refseq Assembly	3319248

Project:


Name	Description
Daucus carota subsp. sativus cultivar:DH1 Genome sequencing and assembly	Carrot (Daucus carota subsp. sativus) whole genome de novo assembly
Daucus carota subsp. sativus cultivar:DH1 RefSeq Genome sequencing	The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA268187). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline. Note that NCBI has substituted different organellar genomes in this assembly from different genotypes from earlier assemblies, this applies only to this RefSeq assembly.

Organism:


Name	Common Name	Comment
Daucus carota

Biomaterial:


Name	Description
SAMN03216637	This biosample is also known by its germplasm accession of DH1, please see this record for more details.

Stock:


Name	Uniquename	Stock Type
DH1	DH1	breeding_research_material

Program, Pipeline, Workflow or Method Name:

SOAPdenovo + GapCloser for SOAPdenovo + integration with linkage maps

Program Version:

v. 2.04 + v. 1.12 + v. NOV-2013

Date Performed:

Thursday, May 5, 2016 - 19:00

Data Source:

Source Name: : SAMN03216637