MK001090 GSSR-091

Resource Type: 
Genetic Marker
Name: 
MK001090 GSSR-091
Identifier: 
MK001090_GSSR_091
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
  2. Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
  3. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  4. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
  5. Alessandro MS, Galmarini CR, Iorizzo M, Simon PW. Molecular mapping of vernalization requirement and fertility restoration genes in carrot.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2013 Feb; 126(2):415-23.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 7 relationships.
Relationships
The genetic_marker, MK001090 GSSR-091, is adjacent to primer, GSSR-91-F.
The genetic_marker, MK001090 GSSR-091, is adjacent to primer, GSSR-91-R.
The genetic_marker, MK001090 GSSR-091, is adjacent to primer, GSSR-91-F.
The genetic_marker, MK001090 GSSR-091, is adjacent to primer, GSSR-91-R.
The genetic_marker, MK001090 GSSR-091, is located in gene, DCAR_011386.
The genetic_marker, MK001090 GSSR-091, is located in gene, LOC108214664.
The marker_locus, GSSR-091, is an instance of genetic_marker, MK001090 GSSR-091.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 J.Parsons Th. HM3Chr821.132GSSR-091MapViewer
2013 Criolla×Bienal345.7GSSR-091MapViewer
2015 HM3Chr821.132GSSR-091MapViewer
2014 yel×colaLG389GSSR-091MapViewer
Synonyms: 
  • MK001090
Sequence Coordinates: 
DCARv2_Chr3:35348351..35348673+
View location in JBrowse: 
DCARv2_Chr3:35348351..35348673+
Sequence: 
GGTTCTTCGAATTCACCTTCAGTGCCTCCTAATTTTCCTGCACAATCTCC
CAGCCTTCCACTAATTACAAAATATTGCAAACAAGCTGAATATGGAATAC
ACTACATATAAAACACGTAATTAATATATGTATGTATGTATGTATGTAGG
CAATTGATCAAATAGAAACCAAAACTAAAATAGAAACTAGAAACTAATTT
AAGTCCTTACATCAATCTAATCTAATGGCTCCTAGAAGGCACCACACACA
ATTCATATACACTCTCCTATACATGATCCCACATAATCCCCTCCGCTTTT
AATTTGATTTTTCCTGTCAATCGGTGAGTTTTATTTTTTATTTTTTGAAA
TTCGACTTCACTGTATTGTTTTCATCTCCCAACGATCAATTTACACACCA
TATGTGCTCTAATTCGGCGCAATTTAGAAATTTTTTATTTTAGTTTCTAG
TTTTTGTTTTAAGGAGGTTTATAGTGGAGTAGGATGTTGTGT
Sequences: 
>MK001090_GSSR_091 ID=MK001090_GSSR_091; Name=MK001090 GSSR-091; organism=Daucus carota; type=genetic_marker
GGTTCTTCGAATTCACCTTCAGTGCCTCCTAATTTTCCTGCACAATCTCC
CAGCCTTCCACTAATTACAAAATATTGCAAACAAGCTGAATATGGAATAC
ACTACATATAAAACACGTAATTAATATATGTATGTATGTATGTATGTAGG
CAATTGATCAAATAGAAACCAAAACTAAAATAGAAACTAGAAACTAATTT
AAGTCCTTACATCAATCTAATCTAATGGCTCCTAGAAGGCACCACACACA
ATTCATATACACTCTCCTATACATGATCCCACATAATCCCCTCCGCTTTT
AATTTGATTTTTCCTGTCAATCGGTGAGTTTTATTTTTTATTTTTTGAAA
TTCGACTTCACTGTATTGTTTTCATCTCCCAACGATCAATTTACACACCA
TATGTGCTCTAATTCGGCGCAATTTAGAAATTTTTTATTTTAGTTTCTAG
TTTTTGTTTTAAGGAGGTTTATAGTGGAGTAGGATGTTGTGT
This is the primary representative sequence for this feature.
Sequence Length: 
492